RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 CRELD1Q96HD1 420 aa6.77□□□□□ -1.33
USP40-209ENST00000452724 GOLGA2P5Q9HBQ8 144 aa6.77□□□□□ -1.33
USP40-209ENST00000452724 GTF2IRD1Q9UHL9 959 aa6.77□□□□□ -1.33
USP40-209ENST00000452724 PCDHA4Q9UN74 947 aa6.77□□□□□ -1.33
USP40-209ENST00000452724 TTF2Q9UNY4 1162 aaKnown RBP6.77□□□□□ -1.33
USP40-209ENST00000452724 PAGE1O75459 146 aa6.76□□□□□ -1.33
USP40-209ENST00000452724 JUNBP17275 347 aaPredicted RBP6.76□□□□□ -1.33
USP40-209ENST00000452724 LMNB1P20700 586 aa6.76□□□□□ -1.33
USP40-209ENST00000452724 RBM25P49756 843 aaKnown RBP6.76□□□□□ -1.33
USP40-209ENST00000452724 PLCL1Q15111 1095 aa6.76□□□□□ -1.33
USP40-209ENST00000452724 PPM1JQ5JR12 505 aa6.76□□□□□ -1.33
USP40-209ENST00000452724 NFXL1Q6ZNB6 911 aa6.76□□□□□ -1.33
USP40-209ENST00000452724 CBLL1Q75N03 491 aa6.76□□□□□ -1.33
USP40-209ENST00000452724 SV2BQ7L1I2 683 aa6.76□□□□□ -1.33
USP40-209ENST00000452724 FAM181AQ8N9Y4 354 aa6.76□□□□□ -1.33
USP40-209ENST00000452724 GRIN3AQ8TCU5 1115 aa6.76□□□□□ -1.33
USP40-209ENST00000452724 MRRFQ96E11 262 aaKnown RBP6.76□□□□□ -1.33
USP40-209ENST00000452724 ASIC4Q96FT7 647 aa6.76□□□□□ -1.33
USP40-209ENST00000452724 VAV3Q9UKW4 847 aa6.76□□□□□ -1.33
USP40-209ENST00000452724 CSADQ9Y600 493 aa6.76□□□□□ -1.33
USP40-209ENST00000452724 TMEM265A0A087WTH1 108 aa6.75□□□□□ -1.33
USP40-209ENST00000452724 KRTAP9-6A0A140TA67 174 aa6.75□□□□□ -1.33
USP40-209ENST00000452724 DCDC2CA8MYV0 355 aa6.75□□□□□ -1.33
USP40-209ENST00000452724 LEFTY1O75610 366 aa6.75□□□□□ -1.33
USP40-209ENST00000452724 CEACAM5P06731 702 aa6.75□□□□□ -1.33
USP40-209ENST00000452724 PRKCQQ04759 706 aa6.75□□□□□ -1.33
USP40-209ENST00000452724 MEI1Q5TIA1 1274 aa6.75□□□□□ -1.33
USP40-209ENST00000452724 PCNX4Q63HM2 1172 aa6.75□□□□□ -1.33
USP40-209ENST00000452724 PLD6Q8N2A8 252 aaKnown RBP6.75□□□□□ -1.33
USP40-209ENST00000452724 BIN1O00499 593 aa6.74□□□□□ -1.33
USP40-209ENST00000452724 CELA3AP09093 270 aa6.74□□□□□ -1.33
USP40-209ENST00000452724 VAMP1P23763 118 aa6.74□□□□□ -1.33
USP40-209ENST00000452724 C12orf40Q86WS4 652 aa6.74□□□□□ -1.33
USP40-209ENST00000452724 ZNF507Q8TCN5 953 aa6.74□□□□□ -1.33
USP40-209ENST00000452724 HRASLS5Q96KN8 279 aa6.74□□□□□ -1.33
USP40-209ENST00000452724 PRDM10Q9NQV6 1147 aa6.74□□□□□ -1.33
USP40-209ENST00000452724 KIAA1522Q9P206 1035 aaPredicted RBP6.74□□□□□ -1.33
USP40-209ENST00000452724 TAF1CQ15572 869 aaPredicted RBP6.73□□□□□ -1.33
USP40-209ENST00000452724 ZBTB37Q5TC79 503 aa6.73□□□□□ -1.33
USP40-209ENST00000452724 MPRIPQ6WCQ1 1025 aa6.73□□□□□ -1.33
USP40-209ENST00000452724 ZNF574Q6ZN55 896 aaPredicted RBP6.73□□□□□ -1.33
USP40-209ENST00000452724 HDXQ7Z353 690 aa6.73□□□□□ -1.33
USP40-209ENST00000452724 USP31Q70CQ4 1352 aa6.72□□□□□ -1.33
USP40-209ENST00000452724 IGF2BP3O00425 579 aaKnown RBP eCLIP6.72□□□□□ -1.33
USP40-209ENST00000452724 ITIH2P19823 946 aa6.72□□□□□ -1.33
USP40-209ENST00000452724 ST13P50502 369 aaKnown RBP6.72□□□□□ -1.33
USP40-209ENST00000452724 OXCT1P55809 520 aa6.72□□□□□ -1.33
USP40-209ENST00000452724 BNIP3Q12983 259 aa6.72□□□□□ -1.33
USP40-209ENST00000452724 AOC3Q16853 763 aa6.72□□□□□ -1.33
USP40-209ENST00000452724 TSNAXIP1Q2TAA8 658 aa6.72□□□□□ -1.33
USP40-209ENST00000452724 DIEXFQ68CQ4 756 aaKnown RBP6.72□□□□□ -1.33
USP40-209ENST00000452724 BACH2Q9BYV9 841 aa6.72□□□□□ -1.33
USP40-209ENST00000452724 SNX11Q9Y5W9 270 aa6.72□□□□□ -1.33
USP40-209ENST00000452724 PRAMEF27A3QJZ7 478 aa6.71□□□□□ -1.34
USP40-209ENST00000452724 GNAT3A8MTJ3 354 aa6.71□□□□□ -1.34
USP40-209ENST00000452724 RECKO95980 971 aa6.71□□□□□ -1.34
USP40-209ENST00000452724 YBX3P16989 372 aaKnown RBP eCLIP6.71□□□□□ -1.34
USP40-209ENST00000452724 ITGB5P18084 799 aa6.71□□□□□ -1.34
USP40-209ENST00000452724 FUT4P22083 530 aa6.71□□□□□ -1.34
USP40-209ENST00000452724 RING1Q06587 406 aa6.71□□□□□ -1.34
USP40-209ENST00000452724 CCDC85BQ15834 202 aaPredicted RBP6.71□□□□□ -1.34
USP40-209ENST00000452724 ZNF792Q3KQV3 632 aa6.71□□□□□ -1.34
USP40-209ENST00000452724 ANGEL2Q5VTE6 544 aaKnown RBP6.71□□□□□ -1.34
USP40-209ENST00000452724 TTBK2Q6IQ55 1244 aa6.71□□□□□ -1.34
USP40-209ENST00000452724 SPRED2Q7Z698 418 aa6.71□□□□□ -1.34
USP40-209ENST00000452724 TMEM87AQ8NBN3 555 aa6.71□□□□□ -1.34
USP40-209ENST00000452724 KRTAP4-12Q9BQ66 201 aa6.71□□□□□ -1.34
USP40-209ENST00000452724 SNCAIPQ9Y6H5 919 aa6.71□□□□□ -1.34
USP40-209ENST00000452724 LRIG2O94898 1065 aa6.7□□□□□ -1.34
USP40-209ENST00000452724 CD8BP10966 210 aa6.7□□□□□ -1.34
USP40-209ENST00000452724 NTF4P34130 210 aa6.7□□□□□ -1.34
USP40-209ENST00000452724 LDLRAD1Q5T700 205 aa6.7□□□□□ -1.34
USP40-209ENST00000452724 RASIP1Q5U651 963 aa6.7□□□□□ -1.34
USP40-209ENST00000452724 ARMCX6Q7L4S7 300 aa6.7□□□□□ -1.34
USP40-209ENST00000452724 PI4K2BQ8TCG2 481 aa6.7□□□□□ -1.34
USP40-209ENST00000452724 ASB11Q8WXH4 323 aa6.7□□□□□ -1.34
USP40-209ENST00000452724 PRDM5Q9NQX1 630 aaPredicted RBP6.7□□□□□ -1.34
USP40-209ENST00000452724 ETF1P62495 437 aaKnown RBP6.69□□□□□ -1.34
USP40-209ENST00000452724 RPS26P62854 115 aaKnown RBP6.69□□□□□ -1.34
USP40-209ENST00000452724 LRFN4Q6PJG9 635 aa6.69□□□□□ -1.34
USP40-209ENST00000452724 PLPPR2Q96GM1 343 aa6.69□□□□□ -1.34
USP40-209ENST00000452724 NOC4LQ9BVI4 516 aaKnown RBP6.69□□□□□ -1.34
USP40-209ENST00000452724 FOXQ1Q9C009 403 aa6.69□□□□□ -1.34
USP40-209ENST00000452724 TNKS2Q9H2K2 1166 aa6.69□□□□□ -1.34
USP40-209ENST00000452724 MAPK8IP1Q9UQF2 711 aa6.69□□□□□ -1.34
USP40-209ENST00000452724 RLBP1P12271 317 aa6.68□□□□□ -1.34
USP40-209ENST00000452724 LCE3BQ5TA77 95 aa6.68□□□□□ -1.34
USP40-209ENST00000452724 ZNF746Q6NUN9 644 aaPredicted RBP6.68□□□□□ -1.34
USP40-209ENST00000452724 CYFIP1Q7L576 1253 aa6.68□□□□□ -1.34
USP40-209ENST00000452724 ATG4DQ86TL0 474 aaPredicted RBP6.68□□□□□ -1.34
USP40-209ENST00000452724 MFSD2AQ8NA29 543 aa6.68□□□□□ -1.34
USP40-209ENST00000452724 HEXIM2Q96MH2 286 aaKnown RBP6.68□□□□□ -1.34
USP40-209ENST00000452724 WNT10AQ9GZT5 417 aa6.68□□□□□ -1.34
USP40-209ENST00000452724 RC3H2Q9HBD1 1191 aaKnown RBP6.68□□□□□ -1.34
USP40-209ENST00000452724 PLAGL2Q9UPG8 496 aa6.68□□□□□ -1.34
USP40-209ENST00000452724 E9PSI1 815 aa6.67□□□□□ -1.34
USP40-209ENST00000452724 SCAMP3O14828 347 aaKnown RBP6.67□□□□□ -1.34
USP40-209ENST00000452724 CLCN7P51798 805 aa6.67□□□□□ -1.34
USP40-209ENST00000452724 IKZF1Q13422 519 aa6.67□□□□□ -1.34
USP40-209ENST00000452724 INPP5AQ14642 412 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms