RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859	ZFPM1	Q8IX07	1006 aa		10.67	□□□□□ -0.7
RFX3-209	ENST00000451859	SPATA5	Q8NB90	893 aa		10.67	□□□□□ -0.7
RFX3-209	ENST00000451859	SSH3	Q8TE77	659 aa		10.67	□□□□□ -0.7
RFX3-209	ENST00000451859	FAM151A	Q8WW52	585 aa		10.67	□□□□□ -0.7
RFX3-209	ENST00000451859	HOOK2	Q96ED9	719 aa		10.67	□□□□□ -0.7
RFX3-209	ENST00000451859	DBNDD2	Q9BQY9	259 aa		10.67	□□□□□ -0.7
RFX3-209	ENST00000451859	RAI14	Q9P0K7	980 aa		10.67	□□□□□ -0.7
RFX3-209	ENST00000451859	FAM198A	Q9UFP1	575 aa		10.67	□□□□□ -0.7
RFX3-209	ENST00000451859	SNCAIP	Q9Y6H5	919 aa		10.67	□□□□□ -0.7
RFX3-209	ENST00000451859	FPGT-TNNI3K	V9GXZ4	949 aa		10.67	□□□□□ -0.7
RFX3-209	ENST00000451859	SIPA1L1	O43166	1804 aa		10.67	□□□□□ -0.7
RFX3-209	ENST00000451859	TNRC18	O15417	2968 aa	Predicted RBP	10.67	□□□□□ -0.7
RFX3-209	ENST00000451859	MROH7-TTC4	A0A0A0MT08	1334 aa		10.66	□□□□□ -0.7
RFX3-209	ENST00000451859	GAK	O14976	1311 aa		10.66	□□□□□ -0.7
RFX3-209	ENST00000451859	PDS5A	Q29RF7	1337 aa	Known RBP	10.66	□□□□□ -0.7
RFX3-209	ENST00000451859	ARID4A	P29374	1257 aa	Predicted RBP	10.66	□□□□□ -0.7
RFX3-209	ENST00000451859	INPP5B	P32019	993 aa		10.66	□□□□□ -0.7
RFX3-209	ENST00000451859	SOX10	P56693	466 aa		10.66	□□□□□ -0.7
RFX3-209	ENST00000451859	OTUD7B	Q6GQQ9	843 aa		10.66	□□□□□ -0.7
RFX3-209	ENST00000451859	SLF2	Q8IX21	1173 aa		10.66	□□□□□ -0.7
RFX3-209	ENST00000451859	BRI3BP	Q8WY22	251 aa		10.66	□□□□□ -0.7
RFX3-209	ENST00000451859	PTPN18	Q99952	460 aa		10.66	□□□□□ -0.7
RFX3-209	ENST00000451859	MYH8	P13535	1937 aa		10.66	□□□□□ -0.7
RFX3-209	ENST00000451859	HTT	P42858	3142 aa		10.66	□□□□□ -0.7
RFX3-209	ENST00000451859	SPDYE5	A6NIY4	337 aa		10.65	□□□□□ -0.7
RFX3-209	ENST00000451859	APBB1	O00213	710 aa		10.65	□□□□□ -0.7
RFX3-209	ENST00000451859	ARHGAP33	O14559	1287 aa		10.65	□□□□□ -0.7
RFX3-209	ENST00000451859	SLURP2	P0DP57	97 aa		10.65	□□□□□ -0.7
RFX3-209	ENST00000451859	GTF2A2	P52657	109 aa		10.65	□□□□□ -0.7
RFX3-209	ENST00000451859	CCDC158	Q5M9N0	1113 aa		10.65	□□□□□ -0.7
RFX3-209	ENST00000451859	CEP85	Q6P2H3	762 aa		10.65	□□□□□ -0.7
RFX3-209	ENST00000451859	CCDC8	Q9H0W5	538 aa	Predicted RBP	10.65	□□□□□ -0.7
RFX3-209	ENST00000451859	TLR7	Q9NYK1	1049 aa	Known RBP	10.65	□□□□□ -0.7
RFX3-209	ENST00000451859	LRP2BP	Q9P2M1	347 aa		10.65	□□□□□ -0.7
RFX3-209	ENST00000451859	EXOC6B	Q9Y2D4	811 aa		10.65	□□□□□ -0.7
RFX3-209	ENST00000451859	COG6	Q9Y2V7	657 aa		10.65	□□□□□ -0.7
RFX3-209	ENST00000451859	TRIM17	Q9Y577	477 aa		10.65	□□□□□ -0.7
RFX3-209	ENST00000451859	NAV1	Q8NEY1	1877 aa		10.65	□□□□□ -0.7
RFX3-209	ENST00000451859	RFX7	Q2KHR2	1363 aa		10.65	□□□□□ -0.71
RFX3-209	ENST00000451859	IRF6	O14896	467 aa		10.64	□□□□□ -0.71
RFX3-209	ENST00000451859	HR	O43593	1189 aa		10.64	□□□□□ -0.71
RFX3-209	ENST00000451859	WDHD1	O75717	1129 aa	Predicted RBP	10.64	□□□□□ -0.71
RFX3-209	ENST00000451859	ECM2	O94769	699 aa	Predicted RBP	10.64	□□□□□ -0.71
RFX3-209	ENST00000451859	UQCRFS1P1	P0C7P4	283 aa		10.64	□□□□□ -0.71
RFX3-209	ENST00000451859	TAF1C	Q15572	869 aa	Predicted RBP	10.64	□□□□□ -0.71
RFX3-209	ENST00000451859	ERO1B	Q86YB8	467 aa		10.64	□□□□□ -0.71
RFX3-209	ENST00000451859	FAM43A	Q8N2R8	423 aa		10.64	□□□□□ -0.71
RFX3-209	ENST00000451859	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	10.64	□□□□□ -0.71
RFX3-209	ENST00000451859	CD99L2	Q8TCZ2	262 aa		10.64	□□□□□ -0.71
RFX3-209	ENST00000451859	ZNF384	Q8TF68	577 aa		10.64	□□□□□ -0.71
RFX3-209	ENST00000451859	NSUN4	Q96CB9	384 aa	Known RBP	10.64	□□□□□ -0.71
RFX3-209	ENST00000451859	DDX4	Q9NQI0	724 aa	Known RBP	10.64	□□□□□ -0.71
RFX3-209	ENST00000451859	DBNL	Q9UJU6	430 aa	Known RBP	10.64	□□□□□ -0.71
RFX3-209	ENST00000451859	RCAN3	Q9UKA8	241 aa		10.64	□□□□□ -0.71
RFX3-209	ENST00000451859	HPS5	Q9UPZ3	1129 aa		10.64	□□□□□ -0.71
RFX3-209	ENST00000451859	TESPA1	A2RU30	521 aa	Predicted RBP	10.63	□□□□□ -0.71
RFX3-209	ENST00000451859	DDTL	A6NHG4	134 aa	Predicted RBP	10.63	□□□□□ -0.71
RFX3-209	ENST00000451859	FAM196B	A6NMK8	535 aa		10.63	□□□□□ -0.71
RFX3-209	ENST00000451859	ENTPD3	O75355	529 aa		10.63	□□□□□ -0.71
RFX3-209	ENST00000451859	MS4A1	P11836	297 aa		10.63	□□□□□ -0.71
RFX3-209	ENST00000451859	GSTO1	P78417	241 aa		10.63	□□□□□ -0.71
RFX3-209	ENST00000451859	PPIL2	Q13356	520 aa		10.63	□□□□□ -0.71
RFX3-209	ENST00000451859	SNAPC2	Q13487	334 aa		10.63	□□□□□ -0.71
RFX3-209	ENST00000451859	SH3BP5L	Q7L8J4	393 aa		10.63	□□□□□ -0.71
RFX3-209	ENST00000451859	EAF2	Q96CJ1	260 aa	Predicted RBP	10.63	□□□□□ -0.71
RFX3-209	ENST00000451859	NOL10	Q9BSC4	688 aa	Known RBP	10.63	□□□□□ -0.71
RFX3-209	ENST00000451859	CFHR5	Q9BXR6	569 aa		10.63	□□□□□ -0.71
RFX3-209	ENST00000451859	IDI2	Q9BXS1	227 aa		10.63	□□□□□ -0.71
RFX3-209	ENST00000451859	IL1RAPL2	Q9NP60	686 aa		10.63	□□□□□ -0.71
RFX3-209	ENST00000451859	GPR108	Q9NPR9	543 aa		10.63	□□□□□ -0.71
RFX3-209	ENST00000451859	NDUFB9	Q9Y6M9	179 aa		10.63	□□□□□ -0.71
RFX3-209	ENST00000451859	PDE4DIP	Q5VU43	2346 aa		10.63	□□□□□ -0.71
RFX3-209	ENST00000451859	KIAA0100	Q14667	2235 aa	Known RBP	10.62	□□□□□ -0.71
RFX3-209	ENST00000451859	BAZ2A	Q9UIF9	1905 aa	Known RBP	10.62	□□□□□ -0.71
RFX3-209	ENST00000451859	DOCK3	Q8IZD9	2030 aa		10.62	□□□□□ -0.71
RFX3-209	ENST00000451859	GPR75-ASB3	A0A0A6YYF3	556 aa		10.62	□□□□□ -0.71
RFX3-209	ENST00000451859	LDHC	P07864	332 aa		10.62	□□□□□ -0.71
RFX3-209	ENST00000451859	CETP	P11597	493 aa		10.62	□□□□□ -0.71
RFX3-209	ENST00000451859	ZAP70	P43403	619 aa		10.62	□□□□□ -0.71
RFX3-209	ENST00000451859	RHBDL3	P58872	404 aa		10.62	□□□□□ -0.71
RFX3-209	ENST00000451859	SP3	Q02447	781 aa		10.62	□□□□□ -0.71
RFX3-209	ENST00000451859	MLLT1	Q03111	559 aa	Predicted RBP	10.62	□□□□□ -0.71
RFX3-209	ENST00000451859	NOM1	Q5C9Z4	860 aa	Known RBP	10.62	□□□□□ -0.71
RFX3-209	ENST00000451859	NAA16	Q6N069	864 aa	Predicted RBP	10.62	□□□□□ -0.71
RFX3-209	ENST00000451859	FBXO46	Q6PJ61	603 aa	Predicted RBP	10.62	□□□□□ -0.71
RFX3-209	ENST00000451859	AACS	Q86V21	672 aa		10.62	□□□□□ -0.71
RFX3-209	ENST00000451859	TEX11	Q8IYF3	940 aa		10.62	□□□□□ -0.71
RFX3-209	ENST00000451859	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	10.62	□□□□□ -0.71
RFX3-209	ENST00000451859	ERO1A	Q96HE7	468 aa		10.62	□□□□□ -0.71
RFX3-209	ENST00000451859	ZFYVE28	Q9HCC9	887 aa		10.62	□□□□□ -0.71
RFX3-209	ENST00000451859	AATF	Q9NY61	560 aa	Known RBP eCLIP	10.62	□□□□□ -0.71
RFX3-209	ENST00000451859	NOP58	Q9Y2X3	529 aa	Known RBP	10.62	□□□□□ -0.71
RFX3-209	ENST00000451859	STK24	Q9Y6E0	443 aa		10.62	□□□□□ -0.71
RFX3-209	ENST00000451859	ATRNL1	Q5VV63	1379 aa		10.62	□□□□□ -0.71
RFX3-209	ENST00000451859	RBBP6	Q7Z6E9	1792 aa	Known RBP	10.62	□□□□□ -0.71
RFX3-209	ENST00000451859	BTBD19	C9JJ37	291 aa		10.61	□□□□□ -0.71
RFX3-209	ENST00000451859	CYP2E1	P05181	493 aa	Predicted RBP	10.61	□□□□□ -0.71
RFX3-209	ENST00000451859	PPAT	Q06203	517 aa		10.61	□□□□□ -0.71
RFX3-209	ENST00000451859	PKN2	Q16513	984 aa	Known RBP	10.61	□□□□□ -0.71
RFX3-209	ENST00000451859	DMRTA1	Q5VZB9	504 aa		10.61	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms