RNA–Protein interactions for RNA: ENST00000449684.6

LIMS1-210, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 492 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-210ENST00000449684 FLT1P17948 1338 aa18.83■□□□□ 0.61
LIMS1-210ENST00000449684 RRP1P56182 461 aaKnown RBP18.83■□□□□ 0.6
LIMS1-210ENST00000449684 KIF22Q14807 665 aa18.83■□□□□ 0.6
LIMS1-210ENST00000449684 SLC9C2Q5TAH2 1124 aa18.83■□□□□ 0.6
LIMS1-210ENST00000449684 FASTKD5Q7L8L6 764 aaKnown RBP18.83■□□□□ 0.6
LIMS1-210ENST00000449684 ANKRD23Q86SG2 305 aa18.83■□□□□ 0.6
LIMS1-210ENST00000449684 BOLA2Q9H3K6 86 aa18.83■□□□□ 0.6
LIMS1-210ENST00000449684 EFCC1Q9HA90 598 aa18.83■□□□□ 0.6
LIMS1-210ENST00000449684 SAP30BPQ9UHR5 308 aaKnown RBP18.83■□□□□ 0.6
LIMS1-210ENST00000449684 MYO5AQ9Y4I1 1855 aaKnown RBP18.83■□□□□ 0.6
LIMS1-210ENST00000449684 PDHXO00330 501 aa18.82■□□□□ 0.6
LIMS1-210ENST00000449684 TLR2O60603 784 aa18.82■□□□□ 0.6
LIMS1-210ENST00000449684 GADL1Q6ZQY3 521 aa18.82■□□□□ 0.6
LIMS1-210ENST00000449684 OTOP1Q7RTM1 612 aa18.82■□□□□ 0.6
LIMS1-210ENST00000449684 PALD1Q9ULE6 856 aa18.82■□□□□ 0.6
LIMS1-210ENST00000449684 TRIM75PA6NK02 468 aa18.81■□□□□ 0.6
LIMS1-210ENST00000449684 SMARCA5O60264 1052 aaPredicted RBP18.81■□□□□ 0.6
LIMS1-210ENST00000449684 FOXP4Q8IVH2 680 aaPredicted RBP18.81■□□□□ 0.6
LIMS1-210ENST00000449684 AFG3L2Q9Y4W6 797 aa18.81■□□□□ 0.6
LIMS1-210ENST00000449684 MAGEB6P1A0A0J9YX57 407 aa18.8■□□□□ 0.6
LIMS1-210ENST00000449684 ATP5JP18859 108 aa18.8■□□□□ 0.6
LIMS1-210ENST00000449684 CAP2P40123 477 aa18.8■□□□□ 0.6
LIMS1-210ENST00000449684 SLC4A8Q2Y0W8 1093 aa18.8■□□□□ 0.6
LIMS1-210ENST00000449684 GPATCH3Q96I76 525 aa18.8■□□□□ 0.6
LIMS1-210ENST00000449684 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.8■□□□□ 0.6
LIMS1-210ENST00000449684 PAG1Q9NWQ8 432 aa18.8■□□□□ 0.6
LIMS1-210ENST00000449684 A0A0G2JLL6 359 aaPredicted RBP18.79■□□□□ 0.6
LIMS1-210ENST00000449684 PDE6AP16499 860 aa18.79■□□□□ 0.6
LIMS1-210ENST00000449684 PRRT2Q7Z6L0 340 aaPredicted RBP18.79■□□□□ 0.6
LIMS1-210ENST00000449684 CCDC84Q86UT8 332 aaPredicted RBP18.79■□□□□ 0.6
LIMS1-210ENST00000449684 PARK7Q99497 189 aaKnown RBP18.79■□□□□ 0.6
LIMS1-210ENST00000449684 TBC1D2Q9BYX2 928 aa18.79■□□□□ 0.6
LIMS1-210ENST00000449684 DCTPP1Q9H773 170 aa18.79■□□□□ 0.6
LIMS1-210ENST00000449684 AS3MTQ9HBK9 375 aa18.79■□□□□ 0.6
LIMS1-210ENST00000449684 DOCK1Q14185 1865 aa18.79■□□□□ 0.6
LIMS1-210ENST00000449684 ZNF532Q9HCE3 1301 aa18.78■□□□□ 0.6
LIMS1-210ENST00000449684 USP17L5A8MUK1 530 aa18.78■□□□□ 0.6
LIMS1-210ENST00000449684 SOX10P56693 466 aa18.78■□□□□ 0.6
LIMS1-210ENST00000449684 EDC3Q96F86 508 aaKnown RBP18.78■□□□□ 0.6
LIMS1-210ENST00000449684 CRNKL1Q9BZJ0 848 aaKnown RBP18.78■□□□□ 0.6
LIMS1-210ENST00000449684 FRMD4AQ9P2Q2 1039 aaPredicted RBP18.78■□□□□ 0.6
LIMS1-210ENST00000449684 ZBTB47Q9UFB7 747 aaPredicted RBP18.78■□□□□ 0.6
LIMS1-210ENST00000449684 CPA4Q9UI42 421 aa18.78■□□□□ 0.6
LIMS1-210ENST00000449684 ECM2O94769 699 aaPredicted RBP18.77■□□□□ 0.6
LIMS1-210ENST00000449684 SPP2Q13103 211 aa18.77■□□□□ 0.6
LIMS1-210ENST00000449684 TTC6Q86TZ1 520 aa18.77■□□□□ 0.6
LIMS1-210ENST00000449684 ZNF280CQ8ND82 737 aa18.77■□□□□ 0.6
LIMS1-210ENST00000449684 HAUS7Q99871 368 aa18.77■□□□□ 0.6
LIMS1-210ENST00000449684 PTPN22Q9Y2R2 807 aa18.77■□□□□ 0.6
LIMS1-210ENST00000449684 POLR3DP05423 398 aaPredicted RBP18.76■□□□□ 0.59
LIMS1-210ENST00000449684 ASNSP08243 561 aa18.76■□□□□ 0.59
LIMS1-210ENST00000449684 MLLT1Q03111 559 aaPredicted RBP18.76■□□□□ 0.59
LIMS1-210ENST00000449684 MOGSQ13724 837 aa18.76■□□□□ 0.59
LIMS1-210ENST00000449684 GPAT2Q6NUI2 795 aa18.76■□□□□ 0.59
LIMS1-210ENST00000449684 ECHDC1Q9NTX5 307 aa18.76■□□□□ 0.59
LIMS1-210ENST00000449684 GDF11O95390 407 aa18.75■□□□□ 0.59
LIMS1-210ENST00000449684 CYP2C8P10632 490 aa18.75■□□□□ 0.59
LIMS1-210ENST00000449684 LACTBP83111 547 aaPredicted RBP18.75■□□□□ 0.59
LIMS1-210ENST00000449684 ZSCAN25Q6NSZ9 544 aa18.75■□□□□ 0.59
LIMS1-210ENST00000449684 C17orf99Q6UX52 265 aa18.75■□□□□ 0.59
LIMS1-210ENST00000449684 SMCR8Q8TEV9 937 aaPredicted RBP18.75■□□□□ 0.59
LIMS1-210ENST00000449684 CRBNQ96SW2 442 aa18.75■□□□□ 0.59
LIMS1-210ENST00000449684 RIOK1Q9BRS2 568 aaKnown RBP18.75■□□□□ 0.59
LIMS1-210ENST00000449684 PCDHB15Q9Y5E8 787 aa18.75■□□□□ 0.59
LIMS1-210ENST00000449684 CDK5RAP2Q96SN8 1893 aa18.74■□□□□ 0.59
LIMS1-210ENST00000449684 FMNL1O95466 1100 aaPredicted RBP18.74■□□□□ 0.59
LIMS1-210ENST00000449684 PABPC4Q13310 644 aaKnown RBP eCLIP18.74■□□□□ 0.59
LIMS1-210ENST00000449684 RRP1BQ14684 758 aaKnown RBP18.74■□□□□ 0.59
LIMS1-210ENST00000449684 GINM1Q9NU53 330 aa18.74■□□□□ 0.59
LIMS1-210ENST00000449684 TMOD4Q9NZQ9 345 aa18.74■□□□□ 0.59
LIMS1-210ENST00000449684 SERPINB13Q9UIV8 391 aa18.74■□□□□ 0.59
LIMS1-210ENST00000449684 PNMA3Q9UL41 463 aa18.74■□□□□ 0.59
LIMS1-210ENST00000449684 AGTPBP1Q9UPW5 1226 aa18.74■□□□□ 0.59
LIMS1-210ENST00000449684 SLC45A1Q9Y2W3 748 aa18.74■□□□□ 0.59
LIMS1-210ENST00000449684 FOCADQ5VW36 1801 aa18.74■□□□□ 0.59
LIMS1-210ENST00000449684 MYH1P12882 1939 aa18.73■□□□□ 0.59
LIMS1-210ENST00000449684 GNRH1P01148 92 aa18.73■□□□□ 0.59
LIMS1-210ENST00000449684 HOXD10P28358 340 aa18.73■□□□□ 0.59
LIMS1-210ENST00000449684 ADD2P35612 726 aa18.73■□□□□ 0.59
LIMS1-210ENST00000449684 RGS19P49795 217 aa18.73■□□□□ 0.59
LIMS1-210ENST00000449684 HMGCS2P54868 508 aa18.73■□□□□ 0.59
LIMS1-210ENST00000449684 METTL16Q86W50 562 aaKnown RBP18.73■□□□□ 0.59
LIMS1-210ENST00000449684 PROCA1Q8NCQ7 364 aaPredicted RBP18.73■□□□□ 0.59
LIMS1-210ENST00000449684 DDRGK1Q96HY6 314 aa18.73■□□□□ 0.59
LIMS1-210ENST00000449684 MCM9Q9NXL9 1143 aa18.73■□□□□ 0.59
LIMS1-210ENST00000449684 TCRBV5S4A2TA0A5A2 114 aa18.72■□□□□ 0.59
LIMS1-210ENST00000449684 PSMC4P43686 418 aa18.72■□□□□ 0.59
LIMS1-210ENST00000449684 NBPF11Q86T75 865 aa18.72■□□□□ 0.59
LIMS1-210ENST00000449684 LCORLQ8N3X6 602 aa18.72■□□□□ 0.59
LIMS1-210ENST00000449684 ARHGAP39Q9C0H5 1083 aa18.72■□□□□ 0.59
LIMS1-210ENST00000449684 EHD4Q9H223 541 aa18.72■□□□□ 0.59
LIMS1-210ENST00000449684 DNAJC18Q9H819 358 aa18.72■□□□□ 0.59
LIMS1-210ENST00000449684 ARMT1Q9H993 441 aa18.72■□□□□ 0.59
LIMS1-210ENST00000449684 ATAD5Q96QE3 1844 aa18.72■□□□□ 0.59
LIMS1-210ENST00000449684 OSBPP22059 807 aa18.71■□□□□ 0.59
LIMS1-210ENST00000449684 CERKLQ49MI3 558 aaPredicted RBP18.71■□□□□ 0.59
LIMS1-210ENST00000449684 SLC9C1Q4G0N8 1177 aa18.71■□□□□ 0.59
LIMS1-210ENST00000449684 AMOTL1Q8IY63 956 aa18.71■□□□□ 0.59
LIMS1-210ENST00000449684 SDR42E1Q8WUS8 393 aa18.71■□□□□ 0.59
LIMS1-210ENST00000449684 WDR18Q9BV38 432 aa18.71■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms