RNA–Protein interactions for RNA: ENST00000449264.2

TNF-208, Transcript of tumor necrosis factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNF, Length 1,676 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNF-208ENST00000449264 TTC6Q86TZ1 520 aa17.32■□□□□ 0.36
TNF-208ENST00000449264 NCOA7Q8NI08 942 aa17.32■□□□□ 0.36
TNF-208ENST00000449264 COL2A1P02458 1487 aaPredicted RBP17.32■□□□□ 0.36
TNF-208ENST00000449264 IQCA1LA6NCM1 817 aa17.32■□□□□ 0.36
TNF-208ENST00000449264 B4E1Z4 1266 aa17.32■□□□□ 0.36
TNF-208ENST00000449264 TNNI2P48788 182 aa17.32■□□□□ 0.36
TNF-208ENST00000449264 NEK4P51957 841 aa17.32■□□□□ 0.36
TNF-208ENST00000449264 SH3BP5LQ7L8J4 393 aa17.32■□□□□ 0.36
TNF-208ENST00000449264 SLC44A5Q8NCS7 719 aa17.32■□□□□ 0.36
TNF-208ENST00000449264 FAM151AQ8WW52 585 aa17.32■□□□□ 0.36
TNF-208ENST00000449264 TCEANC2Q96MN5 208 aa17.32■□□□□ 0.36
TNF-208ENST00000449264 TM6SF1Q9BZW5 370 aa17.32■□□□□ 0.36
TNF-208ENST00000449264 TMEM39BQ9GZU3 492 aa17.32■□□□□ 0.36
TNF-208ENST00000449264 CYP46A1Q9Y6A2 500 aa17.32■□□□□ 0.36
TNF-208ENST00000449264 ATRNL1Q5VV63 1379 aa17.31■□□□□ 0.36
TNF-208ENST00000449264 PDE4BQ07343 736 aa17.31■□□□□ 0.36
TNF-208ENST00000449264 FAM83AQ86UY5 434 aa17.31■□□□□ 0.36
TNF-208ENST00000449264 CSRNP1Q96S65 589 aa17.31■□□□□ 0.36
TNF-208ENST00000449264 DHX36Q9H2U1 1008 aaKnown RBP17.31■□□□□ 0.36
TNF-208ENST00000449264 CNNM2Q9H8M5 875 aa17.31■□□□□ 0.36
TNF-208ENST00000449264 ZSWIM6Q9HCJ5 1215 aa17.31■□□□□ 0.36
TNF-208ENST00000449264 RASA3Q14644 834 aa17.3■□□□□ 0.36
TNF-208ENST00000449264 EAPPQ56P03 285 aaPredicted RBP17.3■□□□□ 0.36
TNF-208ENST00000449264 RUFY3Q7L099 469 aa17.3■□□□□ 0.36
TNF-208ENST00000449264 CHST3Q7LGC8 479 aa17.3■□□□□ 0.36
TNF-208ENST00000449264 APOBEC3FQ8IUX4 373 aaKnown RBP17.3■□□□□ 0.36
TNF-208ENST00000449264 CDAN1Q8IWY9 1227 aa17.3■□□□□ 0.36
TNF-208ENST00000449264 CRACR2BQ8N4Y2 399 aaPredicted RBP17.3■□□□□ 0.36
TNF-208ENST00000449264 ZNF526Q8TF50 670 aaPredicted RBP17.3■□□□□ 0.36
TNF-208ENST00000449264 KRT23Q9C075 422 aa17.3■□□□□ 0.36
TNF-208ENST00000449264 SERPINB13Q9UIV8 391 aa17.3■□□□□ 0.36
TNF-208ENST00000449264 KDM4AO75164 1064 aa17.29■□□□□ 0.36
TNF-208ENST00000449264 HMGB1P09429 215 aaKnown RBP17.29■□□□□ 0.36
TNF-208ENST00000449264 SLURP2P0DP57 97 aa17.29■□□□□ 0.36
TNF-208ENST00000449264 RPS6KB1P23443 525 aa17.29■□□□□ 0.36
TNF-208ENST00000449264 C16orf86Q6ZW13 317 aa17.29■□□□□ 0.36
TNF-208ENST00000449264 MB21D2Q8IYB1 491 aaPredicted RBP17.29■□□□□ 0.36
TNF-208ENST00000449264 NKX2-3Q8TAU0 364 aa17.29■□□□□ 0.36
TNF-208ENST00000449264 TRIM34Q9BYJ4 488 aa17.29■□□□□ 0.36
TNF-208ENST00000449264 TAF1DQ9H5J8 278 aaPredicted RBP17.29■□□□□ 0.36
TNF-208ENST00000449264 MKNK2Q9HBH9 465 aa17.29■□□□□ 0.36
TNF-208ENST00000449264 PI4KBQ9UBF8 816 aa17.29■□□□□ 0.36
TNF-208ENST00000449264 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.29■□□□□ 0.36
TNF-208ENST00000449264 FAM196BA6NMK8 535 aa17.29■□□□□ 0.36
TNF-208ENST00000449264 POTECB2RU33 542 aa17.29■□□□□ 0.36
TNF-208ENST00000449264 ST18O60284 1047 aa17.29■□□□□ 0.36
TNF-208ENST00000449264 RANBP6O60518 1105 aaKnown RBP17.29■□□□□ 0.36
TNF-208ENST00000449264 USP50Q70EL3 339 aaPredicted RBP17.29■□□□□ 0.36
TNF-208ENST00000449264 NOL8Q76FK4 1167 aaKnown RBP17.29■□□□□ 0.36
TNF-208ENST00000449264 LRRC2Q9BYS8 371 aa17.29■□□□□ 0.36
TNF-208ENST00000449264 DEFB129Q9H1M3 183 aa17.29■□□□□ 0.36
TNF-208ENST00000449264 PDRG1Q9NUG6 133 aa17.29■□□□□ 0.36
TNF-208ENST00000449264 PCP11498 1178 aaKnown RBP17.28■□□□□ 0.36
TNF-208ENST00000449264 MCM5P33992 734 aa17.28■□□□□ 0.36
TNF-208ENST00000449264 CDK8P49336 464 aa17.28■□□□□ 0.36
TNF-208ENST00000449264 CYB5R4Q7L1T6 521 aa17.28■□□□□ 0.36
TNF-208ENST00000449264 DHX32Q7L7V1 743 aaKnown RBP17.28■□□□□ 0.36
TNF-208ENST00000449264 ESR2Q92731 530 aa17.28■□□□□ 0.36
TNF-208ENST00000449264 EHD4Q9H223 541 aa17.28■□□□□ 0.36
TNF-208ENST00000449264 ZNF287Q9HBT7 754 aa17.28■□□□□ 0.36
TNF-208ENST00000449264 PRC1O43663 620 aa17.27■□□□□ 0.36
TNF-208ENST00000449264 ORC4O43929 436 aa17.27■□□□□ 0.36
TNF-208ENST00000449264 CD2BP2O95400 341 aaKnown RBP17.27■□□□□ 0.36
TNF-208ENST00000449264 FGD1P98174 961 aa17.27■□□□□ 0.36
TNF-208ENST00000449264 GABPAQ06546 454 aa17.27■□□□□ 0.36
TNF-208ENST00000449264 PITPNM2Q9BZ72 1349 aa17.26■□□□□ 0.35
TNF-208ENST00000449264 FGRP09769 529 aa17.26■□□□□ 0.35
TNF-208ENST00000449264 ANTXR2P58335 489 aa17.26■□□□□ 0.35
TNF-208ENST00000449264 FAM47AQ5JRC9 791 aa17.26■□□□□ 0.35
TNF-208ENST00000449264 DCPSQ96C86 337 aaKnown RBP17.26■□□□□ 0.35
TNF-208ENST00000449264 DNAJC18Q9H819 358 aa17.26■□□□□ 0.35
TNF-208ENST00000449264 RRAGCQ9HB90 399 aa17.26■□□□□ 0.35
TNF-208ENST00000449264 SWAP70Q9UH65 585 aa17.26■□□□□ 0.35
TNF-208ENST00000449264 TSPY2A6NKD2 308 aa17.26■□□□□ 0.35
TNF-208ENST00000449264 RASA1P20936 1047 aa17.26■□□□□ 0.35
TNF-208ENST00000449264 AK2P54819 239 aa17.26■□□□□ 0.35
TNF-208ENST00000449264 Q6ZUG5 572 aa17.26■□□□□ 0.35
TNF-208ENST00000449264 PNMA8AQ86V59 439 aaPredicted RBP17.26■□□□□ 0.35
TNF-208ENST00000449264 ZNF444Q8N0Y2 327 aaPredicted RBP17.26■□□□□ 0.35
TNF-208ENST00000449264 TTC14Q96N46 770 aa17.26■□□□□ 0.35
TNF-208ENST00000449264 ZKSCAN3Q9BRR0 538 aa17.26■□□□□ 0.35
TNF-208ENST00000449264 ZSWIM5Q9P217 1185 aa17.26■□□□□ 0.35
TNF-208ENST00000449264 SHMT1P34896 483 aa17.25■□□□□ 0.35
TNF-208ENST00000449264 PRAMEF18Q5VWM3 479 aa17.25■□□□□ 0.35
TNF-208ENST00000449264 HSCBQ8IWL3 235 aa17.25■□□□□ 0.35
TNF-208ENST00000449264 SULF1Q8IWU6 871 aa17.25■□□□□ 0.35
TNF-208ENST00000449264 TEPSINQ96N21 525 aa17.25■□□□□ 0.35
TNF-208ENST00000449264 LARP6Q9BRS8 491 aaKnown RBP17.25■□□□□ 0.35
TNF-208ENST00000449264 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.25■□□□□ 0.35
TNF-208ENST00000449264 ADM5C9JUS6 153 aa17.24■□□□□ 0.35
TNF-208ENST00000449264 TSPY3P0CV98 308 aa17.24■□□□□ 0.35
TNF-208ENST00000449264 TSPY8P0CW00 308 aa17.24■□□□□ 0.35
TNF-208ENST00000449264 VEGFAP15692 232 aaPredicted RBP17.24■□□□□ 0.35
TNF-208ENST00000449264 TFAP4Q01664 338 aa17.24■□□□□ 0.35
TNF-208ENST00000449264 EXOSC10Q01780 885 aaKnown RBP17.24■□□□□ 0.35
TNF-208ENST00000449264 MIGA2Q7L4E1 593 aa17.24■□□□□ 0.35
TNF-208ENST00000449264 FOXP4Q8IVH2 680 aaPredicted RBP17.24■□□□□ 0.35
TNF-208ENST00000449264 UBAC1Q9BSL1 405 aa17.24■□□□□ 0.35
TNF-208ENST00000449264 NMRK2Q9NPI5 230 aa17.24■□□□□ 0.35
TNF-208ENST00000449264 PGAP2Q9UHJ9 254 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms