RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 PTPRAP18433 802 aa15.45■□□□□ 0.06
PRPF40A-203ENST00000448428 RRP1BQ14684 758 aaKnown RBP15.45■□□□□ 0.06
PRPF40A-203ENST00000448428 FOXP4Q8IVH2 680 aaPredicted RBP15.45■□□□□ 0.06
PRPF40A-203ENST00000448428 PICK1Q9NRD5 415 aa15.45■□□□□ 0.06
PRPF40A-203ENST00000448428 SAP30BPQ9UHR5 308 aaKnown RBP15.45■□□□□ 0.06
PRPF40A-203ENST00000448428 KCNH4Q9UQ05 1017 aa15.45■□□□□ 0.06
PRPF40A-203ENST00000448428 SUPT16HQ9Y5B9 1047 aaKnown RBP15.45■□□□□ 0.06
PRPF40A-203ENST00000448428 ZHX2Q9Y6X8 837 aa15.45■□□□□ 0.06
PRPF40A-203ENST00000448428 ATAD5Q96QE3 1844 aa15.45■□□□□ 0.06
PRPF40A-203ENST00000448428 MAGEB6P1A0A0J9YX57 407 aa15.44■□□□□ 0.06
PRPF40A-203ENST00000448428 BTBD19C9JJ37 291 aa15.44■□□□□ 0.06
PRPF40A-203ENST00000448428 FKTNO75072 461 aa15.44■□□□□ 0.06
PRPF40A-203ENST00000448428 USP5P45974 858 aa15.44■□□□□ 0.06
PRPF40A-203ENST00000448428 SLFNL1Q499Z3 407 aa15.44■□□□□ 0.06
PRPF40A-203ENST00000448428 ABHD8Q96I13 439 aa15.44■□□□□ 0.06
PRPF40A-203ENST00000448428 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.44■□□□□ 0.06
PRPF40A-203ENST00000448428 HERC5Q9UII4 1024 aaKnown RBP15.44■□□□□ 0.06
PRPF40A-203ENST00000448428 CXCL11O14625 94 aa15.43■□□□□ 0.06
PRPF40A-203ENST00000448428 CHGBP05060 677 aa15.43■□□□□ 0.06
PRPF40A-203ENST00000448428 ADD2P35612 726 aa15.43■□□□□ 0.06
PRPF40A-203ENST00000448428 CAP2P40123 477 aa15.43■□□□□ 0.06
PRPF40A-203ENST00000448428 HDAC1Q13547 482 aaPredicted RBP15.43■□□□□ 0.06
PRPF40A-203ENST00000448428 AAMPQ13685 434 aa15.43■□□□□ 0.06
PRPF40A-203ENST00000448428 MOGSQ13724 837 aa15.43■□□□□ 0.06
PRPF40A-203ENST00000448428 SLC4A8Q2Y0W8 1093 aa15.43■□□□□ 0.06
PRPF40A-203ENST00000448428 TSHZ3Q63HK5 1081 aa15.43■□□□□ 0.06
PRPF40A-203ENST00000448428 METTL16Q86W50 562 aaKnown RBP15.43■□□□□ 0.06
PRPF40A-203ENST00000448428 EXOC6Q8TAG9 804 aa15.43■□□□□ 0.06
PRPF40A-203ENST00000448428 AFG3L2Q9Y4W6 797 aa15.43■□□□□ 0.06
PRPF40A-203ENST00000448428 TAF1CQ15572 869 aaPredicted RBP15.42■□□□□ 0.06
PRPF40A-203ENST00000448428 CTU1Q7Z7A3 348 aaKnown RBP15.42■□□□□ 0.06
PRPF40A-203ENST00000448428 CCDC84Q86UT8 332 aaPredicted RBP15.42■□□□□ 0.06
PRPF40A-203ENST00000448428 OTUD7AQ8TE49 926 aaPredicted RBP15.42■□□□□ 0.06
PRPF40A-203ENST00000448428 GPATCH3Q96I76 525 aa15.42■□□□□ 0.06
PRPF40A-203ENST00000448428 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.42■□□□□ 0.061e-8■□□□□ 10.3
PRPF40A-203ENST00000448428 DNAJC18Q9H819 358 aa15.42■□□□□ 0.06
PRPF40A-203ENST00000448428 ZFYVE28Q9HCC9 887 aa15.42■□□□□ 0.06
PRPF40A-203ENST00000448428 PTPRFP10586 1907 aa15.42■□□□□ 0.06
PRPF40A-203ENST00000448428 HLA-DOAP06340 250 aa15.41■□□□□ 0.06
PRPF40A-203ENST00000448428 ANKRD45Q5TZF3 282 aa15.41■□□□□ 0.06
PRPF40A-203ENST00000448428 ANKRD23Q86SG2 305 aa15.41■□□□□ 0.06
PRPF40A-203ENST00000448428 LCORLQ8N3X6 602 aa15.41■□□□□ 0.06
PRPF40A-203ENST00000448428 CRACR2BQ8N4Y2 399 aaPredicted RBP15.41■□□□□ 0.06
PRPF40A-203ENST00000448428 CRNKL1Q9BZJ0 848 aaKnown RBP15.41■□□□□ 0.06
PRPF40A-203ENST00000448428 ARMT1Q9H993 441 aa15.41■□□□□ 0.06
PRPF40A-203ENST00000448428 ZCCHC17Q9NP64 241 aaKnown RBP15.41■□□□□ 0.06
PRPF40A-203ENST00000448428 A0A0G2JLL6 359 aaPredicted RBP15.4■□□□□ 0.06
PRPF40A-203ENST00000448428 JAG1P78504 1218 aa15.4■□□□□ 0.06
PRPF40A-203ENST00000448428 UBE3CQ15386 1083 aa15.4■□□□□ 0.06
PRPF40A-203ENST00000448428 GPAT2Q6NUI2 795 aa15.4■□□□□ 0.06
PRPF40A-203ENST00000448428 PRRT2Q7Z6L0 340 aaPredicted RBP15.4■□□□□ 0.06
PRPF40A-203ENST00000448428 GCC1Q96CN9 775 aa15.4■□□□□ 0.06
PRPF40A-203ENST00000448428 TRIM34Q9BYJ4 488 aa15.4■□□□□ 0.06
PRPF40A-203ENST00000448428 TTC41PQ6P2S7 1318 aa15.4■□□□□ 0.06
PRPF40A-203ENST00000448428 NAV1Q8NEY1 1877 aa15.4■□□□□ 0.06
PRPF40A-203ENST00000448428 TRIM75PA6NK02 468 aa15.39■□□□□ 0.05
PRPF40A-203ENST00000448428 PDHXO00330 501 aa15.39■□□□□ 0.05
PRPF40A-203ENST00000448428 PLCD1P51178 756 aa15.39■□□□□ 0.05
PRPF40A-203ENST00000448428 SP3Q02447 781 aa15.39■□□□□ 0.05
PRPF40A-203ENST00000448428 ZSCAN25Q6NSZ9 544 aa15.39■□□□□ 0.05
PRPF40A-203ENST00000448428 FASTKD5Q7L8L6 764 aaKnown RBP15.39■□□□□ 0.05
PRPF40A-203ENST00000448428 TTC6Q86TZ1 520 aa15.39■□□□□ 0.05
PRPF40A-203ENST00000448428 KBTBD3Q8NAB2 608 aa15.39■□□□□ 0.05
PRPF40A-203ENST00000448428 PI4K2BQ8TCG2 481 aa15.39■□□□□ 0.05
PRPF40A-203ENST00000448428 SDR42E1Q8WUS8 393 aa15.39■□□□□ 0.05
PRPF40A-203ENST00000448428 DDX60LQ5H9U9 1706 aaKnown RBP15.38■□□□□ 0.05
PRPF40A-203ENST00000448428 USP17L5A8MUK1 530 aa15.38■□□□□ 0.05
PRPF40A-203ENST00000448428 PRKAB2O43741 272 aa15.38■□□□□ 0.05
PRPF40A-203ENST00000448428 TLR2O60603 784 aa15.38■□□□□ 0.05
PRPF40A-203ENST00000448428 MBD4O95243 580 aa15.38■□□□□ 0.05
PRPF40A-203ENST00000448428 IGHDP01880 384 aa15.38■□□□□ 0.05
PRPF40A-203ENST00000448428 POLR3DP05423 398 aaPredicted RBP15.38■□□□□ 0.05
PRPF40A-203ENST00000448428 SPP2Q13103 211 aa15.38■□□□□ 0.05
PRPF40A-203ENST00000448428 PKN2Q16513 984 aaKnown RBP15.38■□□□□ 0.05
PRPF40A-203ENST00000448428 SHROOM1Q2M3G4 852 aaPredicted RBP15.38■□□□□ 0.05
PRPF40A-203ENST00000448428 CD99L2Q8TCZ2 262 aa15.38■□□□□ 0.05
PRPF40A-203ENST00000448428 EHD4Q9H223 541 aa15.38■□□□□ 0.05
PRPF40A-203ENST00000448428 RWDD1Q9H446 243 aaPredicted RBP15.38■□□□□ 0.05
PRPF40A-203ENST00000448428 DCP1AQ9NPI6 582 aaPredicted RBP15.38■□□□□ 0.05
PRPF40A-203ENST00000448428 ZBTB47Q9UFB7 747 aaPredicted RBP15.38■□□□□ 0.05
PRPF40A-203ENST00000448428 SERPINB13Q9UIV8 391 aa15.38■□□□□ 0.05
PRPF40A-203ENST00000448428 BAZ2AQ9UIF9 1905 aaKnown RBP15.38■□□□□ 0.05
PRPF40A-203ENST00000448428 SALL3Q9BXA9 1300 aa15.38■□□□□ 0.05
PRPF40A-203ENST00000448428 CCDC85CA6NKD9 419 aa15.37■□□□□ 0.05
PRPF40A-203ENST00000448428 ERC2O15083 957 aa15.37■□□□□ 0.05
PRPF40A-203ENST00000448428 GLRX3O76003 335 aaKnown RBP15.37■□□□□ 0.05
PRPF40A-203ENST00000448428 ASNSP08243 561 aa15.37■□□□□ 0.05
PRPF40A-203ENST00000448428 MX1P20591 662 aa15.37■□□□□ 0.05
PRPF40A-203ENST00000448428 CAP1Q01518 475 aa15.37■□□□□ 0.05
PRPF40A-203ENST00000448428 EVX2Q03828 476 aa15.37■□□□□ 0.05
PRPF40A-203ENST00000448428 TATDN1Q6P1N9 297 aa15.37■□□□□ 0.05
PRPF40A-203ENST00000448428 GADL1Q6ZQY3 521 aa15.37■□□□□ 0.05
PRPF40A-203ENST00000448428 ZNF280CQ8ND82 737 aa15.37■□□□□ 0.05
PRPF40A-203ENST00000448428 ERO1AQ96HE7 468 aa15.37■□□□□ 0.05
PRPF40A-203ENST00000448428 PUS7LQ9H0K6 701 aaKnown RBP15.37■□□□□ 0.05
PRPF40A-203ENST00000448428 MCM9Q9NXL9 1143 aa15.37■□□□□ 0.05
PRPF40A-203ENST00000448428 RNF113AO15541 343 aaKnown RBP15.36■□□□□ 0.05
PRPF40A-203ENST00000448428 GDF11O95390 407 aa15.36■□□□□ 0.05
PRPF40A-203ENST00000448428 SMC5Q8IY18 1101 aa15.36■□□□□ 0.05
PRPF40A-203ENST00000448428 TBC1D2Q9BYX2 928 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms