RNA–Protein interactions for RNA: ENST00000446349.5

PTPN3-204, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 1 (best) BASIC

Gene PTPN3, Length 8,630 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-204ENST00000446349 RTKN2Q8IZC4 609 aa9.56□□□□□ -0.88
PTPN3-204ENST00000446349 TBC1D2Q9BYX2 928 aa9.56□□□□□ -0.88
PTPN3-204ENST00000446349 MMRN2Q9H8L6 949 aa9.56□□□□□ -0.88
PTPN3-204ENST00000446349 PALM3A6NDB9 673 aaPredicted RBP9.56□□□□□ -0.88
PTPN3-204ENST00000446349 MAIP1Q8WWC4 291 aa9.56□□□□□ -0.88
PTPN3-204ENST00000446349 CDHR1Q96JP9 859 aa9.56□□□□□ -0.88
PTPN3-204ENST00000446349 FAM81BQ96LP2 452 aa9.56□□□□□ -0.88
PTPN3-204ENST00000446349 ZNF830Q96NB3 372 aaPredicted RBP9.56□□□□□ -0.88
PTPN3-204ENST00000446349 MAGI3Q5TCQ9 1506 aa9.56□□□□□ -0.88
PTPN3-204ENST00000446349 MAP3K15Q6ZN16 1313 aa9.56□□□□□ -0.88
PTPN3-204ENST00000446349 EEF2P13639 858 aaKnown RBP9.56□□□□□ -0.88
PTPN3-204ENST00000446349 RPS6KB1P23443 525 aa9.56□□□□□ -0.88
PTPN3-204ENST00000446349 UBE4AQ14139 1066 aa9.56□□□□□ -0.88
PTPN3-204ENST00000446349 CEP135Q66GS9 1140 aa9.56□□□□□ -0.88
PTPN3-204ENST00000446349 ZBTB8OSQ8IWT0 167 aa9.56□□□□□ -0.88
PTPN3-204ENST00000446349 AFAP1L2Q8N4X5 818 aa9.56□□□□□ -0.88
PTPN3-204ENST00000446349 ZNF713Q8N859 430 aaPredicted RBP9.56□□□□□ -0.88
PTPN3-204ENST00000446349 ADD3Q9UEY8 706 aaKnown RBP9.56□□□□□ -0.88
PTPN3-204ENST00000446349 FOSP01100 380 aaPredicted RBP9.56□□□□□ -0.88
PTPN3-204ENST00000446349 HCLS1P14317 486 aaPredicted RBP9.56□□□□□ -0.88
PTPN3-204ENST00000446349 KRT27Q7Z3Y8 459 aa9.56□□□□□ -0.88
PTPN3-204ENST00000446349 FCHSD1Q86WN1 690 aa9.56□□□□□ -0.88
PTPN3-204ENST00000446349 JARID2Q92833 1246 aaPredicted RBP9.56□□□□□ -0.88
PTPN3-204ENST00000446349 FAM169AQ9Y6X4 670 aa9.56□□□□□ -0.88
PTPN3-204ENST00000446349 OPA1O60313 960 aa9.56□□□□□ -0.88
PTPN3-204ENST00000446349 CUTAO60888 179 aa9.56□□□□□ -0.88
PTPN3-204ENST00000446349 SEL1L2Q5TEA6 688 aa9.56□□□□□ -0.88
PTPN3-204ENST00000446349 SRGAP1Q7Z6B7 1085 aa9.56□□□□□ -0.88
PTPN3-204ENST00000446349 DHX58Q96C10 678 aa9.56□□□□□ -0.88
PTPN3-204ENST00000446349 PNMA3Q9UL41 463 aa9.56□□□□□ -0.88
PTPN3-204ENST00000446349 TTF2Q9UNY4 1162 aaKnown RBP9.56□□□□□ -0.88
PTPN3-204ENST00000446349 NCAPD2Q15021 1401 aa9.56□□□□□ -0.88
PTPN3-204ENST00000446349 N4BP1O75113 896 aaKnown RBP9.56□□□□□ -0.88
PTPN3-204ENST00000446349 CCDC184Q52MB2 194 aa9.56□□□□□ -0.88
PTPN3-204ENST00000446349 MFSD14BQ5SR56 506 aa9.56□□□□□ -0.88
PTPN3-204ENST00000446349 HELBQ8NG08 1087 aaPredicted RBP9.56□□□□□ -0.88
PTPN3-204ENST00000446349 CPLX3Q8WVH0 158 aa9.56□□□□□ -0.88
PTPN3-204ENST00000446349 ADPGKQ9BRR6 497 aa9.56□□□□□ -0.88
PTPN3-204ENST00000446349 GPCPD1Q9NPB8 672 aa9.56□□□□□ -0.88
PTPN3-204ENST00000446349 PTPRTO14522 1441 aa9.56□□□□□ -0.88
PTPN3-204ENST00000446349 TNNT1P13805 278 aa9.56□□□□□ -0.88
PTPN3-204ENST00000446349 FAM160B1Q5W0V3 765 aa9.56□□□□□ -0.88
PTPN3-204ENST00000446349 CTR9Q6PD62 1173 aa9.56□□□□□ -0.88
PTPN3-204ENST00000446349 BCS1LQ9Y276 419 aa9.56□□□□□ -0.88
PTPN3-204ENST00000446349 SSH2Q76I76 1423 aa9.55□□□□□ -0.88
PTPN3-204ENST00000446349 CHMLP26374 656 aa9.55□□□□□ -0.88
PTPN3-204ENST00000446349 BIRC3Q13489 604 aa9.55□□□□□ -0.88
PTPN3-204ENST00000446349 EAPPQ56P03 285 aaPredicted RBP9.55□□□□□ -0.88
PTPN3-204ENST00000446349 ZNF277Q9NRM2 450 aaPredicted RBP9.55□□□□□ -0.88
PTPN3-204ENST00000446349 PLEKHG2Q9H7P9 1386 aa9.55□□□□□ -0.88
PTPN3-204ENST00000446349 ERVV-1B6SEH8 477 aa9.55□□□□□ -0.88
PTPN3-204ENST00000446349 BIN1O00499 593 aa9.55□□□□□ -0.88
PTPN3-204ENST00000446349 CCNT1O60563 726 aaKnown RBP9.55□□□□□ -0.88
PTPN3-204ENST00000446349 CALCRLQ16602 461 aa9.55□□□□□ -0.88
PTPN3-204ENST00000446349 ARHGAP27Q6ZUM4 889 aa9.55□□□□□ -0.88
PTPN3-204ENST00000446349 TRMT1LQ7Z2T5 733 aaKnown RBP9.55□□□□□ -0.88
PTPN3-204ENST00000446349 LUC7L2Q9Y383 392 aaKnown RBP9.55□□□□□ -0.88
PTPN3-204ENST00000446349 ATP5JP18859 108 aa9.55□□□□□ -0.88
PTPN3-204ENST00000446349 TNNC1P63316 161 aa9.55□□□□□ -0.88
PTPN3-204ENST00000446349 PPP1R2P3Q6NXS1 205 aa9.55□□□□□ -0.88
PTPN3-204ENST00000446349 REXO1Q8N1G1 1221 aaKnown RBP9.55□□□□□ -0.88
PTPN3-204ENST00000446349 CCDC26Q8TAB7 109 aa9.55□□□□□ -0.88
PTPN3-204ENST00000446349 PA2G4Q9UQ80 394 aaKnown RBP9.55□□□□□ -0.88
PTPN3-204ENST00000446349 ERVK-7P63135 1459 aa9.55□□□□□ -0.88
PTPN3-204ENST00000446349 MYO3BQ8WXR4 1341 aa9.55□□□□□ -0.88
PTPN3-204ENST00000446349 hCG_1984214I3L0E3 225 aa9.55□□□□□ -0.88
PTPN3-204ENST00000446349 LETM2Q2VYF4 491 aa9.55□□□□□ -0.88
PTPN3-204ENST00000446349 DNAJC10Q8IXB1 793 aa9.55□□□□□ -0.88
PTPN3-204ENST00000446349 CEP63Q96MT8 703 aa9.55□□□□□ -0.88
PTPN3-204ENST00000446349 NACA2Q9H009 215 aa9.55□□□□□ -0.88
PTPN3-204ENST00000446349 USP40Q9NVE5 1235 aa9.55□□□□□ -0.88
PTPN3-204ENST00000446349 LAMC1P11047 1609 aa9.55□□□□□ -0.88
PTPN3-204ENST00000446349 CROCC2H7BZ55 1655 aa9.55□□□□□ -0.88
PTPN3-204ENST00000446349 CCDC169A6NNP5 214 aa9.55□□□□□ -0.88
PTPN3-204ENST00000446349 CIAO1O76071 339 aa9.55□□□□□ -0.88
PTPN3-204ENST00000446349 ERCC6LQ2NKX8 1250 aa9.55□□□□□ -0.88
PTPN3-204ENST00000446349 SPATA24Q86W54 205 aa9.55□□□□□ -0.88
PTPN3-204ENST00000446349 SAP30BPQ9UHR5 308 aaKnown RBP9.55□□□□□ -0.88
PTPN3-204ENST00000446349 PHLPP2Q6ZVD8 1323 aa9.55□□□□□ -0.88
PTPN3-204ENST00000446349 LOC102724428A0A0B4J2F2 783 aa9.55□□□□□ -0.88
PTPN3-204ENST00000446349 SIK1P57059 783 aa9.55□□□□□ -0.88
PTPN3-204ENST00000446349 GPATCH4Q5T3I0 446 aaKnown RBP9.55□□□□□ -0.88
PTPN3-204ENST00000446349 GPR108Q9NPR9 543 aa9.55□□□□□ -0.88
PTPN3-204ENST00000446349 ATG3Q9NT62 314 aa9.55□□□□□ -0.88
PTPN3-204ENST00000446349 UQCRHLA0A096LP55 91 aa9.54□□□□□ -0.88
PTPN3-204ENST00000446349 UQCRHP07919 91 aa9.54□□□□□ -0.88
PTPN3-204ENST00000446349 UBL4BQ8N7F7 174 aa9.54□□□□□ -0.88
PTPN3-204ENST00000446349 ZRANB1Q9UGI0 708 aa9.54□□□□□ -0.88
PTPN3-204ENST00000446349 FEZ2Q9UHY8 353 aaPredicted RBP9.54□□□□□ -0.88
PTPN3-204ENST00000446349 PRIMPOLQ96LW4 560 aa9.54□□□□□ -0.88
PTPN3-204ENST00000446349 ADRA2BP18089 450 aa9.54□□□□□ -0.88
PTPN3-204ENST00000446349 CCDC93Q567U6 631 aa9.54□□□□□ -0.88
PTPN3-204ENST00000446349 RIOK1Q9BRS2 568 aaKnown RBP9.54□□□□□ -0.88
PTPN3-204ENST00000446349 MAGEF1Q9HAY2 307 aa9.54□□□□□ -0.88
PTPN3-204ENST00000446349 AATFQ9NY61 560 aaKnown RBP eCLIP9.54□□□□□ -0.88
PTPN3-204ENST00000446349 PRKAG2Q9UGJ0 569 aa9.54□□□□□ -0.88
PTPN3-204ENST00000446349 IGSF3O75054 1194 aa9.54□□□□□ -0.88
PTPN3-204ENST00000446349 BCCIPQ9P287 314 aaKnown RBP eCLIP9.54□□□□□ -0.88
PTPN3-204ENST00000446349 CTAGE15A4D2H0 777 aa9.54□□□□□ -0.88
PTPN3-204ENST00000446349 CTAGE8P0CG41 777 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms