RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 ESR2Q92731 530 aa13.52□□□□□ -0.25
MSH6-204ENST00000445503 MAN1B1Q9UKM7 699 aa13.52□□□□□ -0.25
MSH6-204ENST00000445503 NEDD4P46934 1319 aa13.51□□□□□ -0.25
MSH6-204ENST00000445503 MARCH6O60337 910 aa13.51□□□□□ -0.25
MSH6-204ENST00000445503 TUBB4AP04350 444 aa13.51□□□□□ -0.25
MSH6-204ENST00000445503 MCM7P33993 719 aa13.51□□□□□ -0.25
MSH6-204ENST00000445503 PUM3Q15397 648 aaKnown RBP13.51□□□□□ -0.25
MSH6-204ENST00000445503 VSTM4Q8IW00 320 aa13.51□□□□□ -0.25
MSH6-204ENST00000445503 MORC2Q9Y6X9 1032 aaPredicted RBP13.51□□□□□ -0.25
MSH6-204ENST00000445503 PATL2C9JE40 543 aaKnown RBP13.51□□□□□ -0.25
MSH6-204ENST00000445503 PDE8BO95263 885 aa13.51□□□□□ -0.25
MSH6-204ENST00000445503 GUCY1A2P33402 732 aa13.51□□□□□ -0.25
MSH6-204ENST00000445503 LEKR1Q6ZMV7 388 aa13.51□□□□□ -0.25
MSH6-204ENST00000445503 CTNND2Q9UQB3 1225 aa13.51□□□□□ -0.25
MSH6-204ENST00000445503 ERVV-2B6SEH9 535 aa13.51□□□□□ -0.25
MSH6-204ENST00000445503 DEXIO95424 95 aa13.51□□□□□ -0.25
MSH6-204ENST00000445503 PRR29P0C7W0 189 aa13.51□□□□□ -0.25
MSH6-204ENST00000445503 KIAA1328Q86T90 577 aa13.51□□□□□ -0.25
MSH6-204ENST00000445503 GPIHBP1Q8IV16 184 aa13.51□□□□□ -0.25
MSH6-204ENST00000445503 ZCCHC17Q9NP64 241 aaKnown RBP13.51□□□□□ -0.25
MSH6-204ENST00000445503 PPP6R2O75170 966 aa13.5□□□□□ -0.25
MSH6-204ENST00000445503 OAS2P29728 719 aaKnown RBP13.5□□□□□ -0.25
MSH6-204ENST00000445503 ACSBG1Q96GR2 724 aa13.5□□□□□ -0.25
MSH6-204ENST00000445503 CSRNP2Q9H175 543 aa13.5□□□□□ -0.25
MSH6-204ENST00000445503 RFX7Q2KHR2 1363 aa13.5□□□□□ -0.25
MSH6-204ENST00000445503 RAD21O60216 631 aa13.5□□□□□ -0.25
MSH6-204ENST00000445503 PNMA6AP0CW24 399 aaPredicted RBP13.5□□□□□ -0.25
MSH6-204ENST00000445503 CASP7P55210 303 aa13.5□□□□□ -0.25
MSH6-204ENST00000445503 TOGARAM2Q6ZUX3 1019 aa13.5□□□□□ -0.25
MSH6-204ENST00000445503 METTL16Q86W50 562 aaKnown RBP13.5□□□□□ -0.25
MSH6-204ENST00000445503 EEF2KMTQ96G04 330 aa13.5□□□□□ -0.25
MSH6-204ENST00000445503 GUCA1BQ9UMX6 200 aa13.5□□□□□ -0.25
MSH6-204ENST00000445503 ZNF654Q8IZM8 581 aa13.5□□□□□ -0.25
MSH6-204ENST00000445503 LPIN2Q92539 896 aa13.5□□□□□ -0.25
MSH6-204ENST00000445503 IRX2Q9BZI1 471 aaPredicted RBP13.5□□□□□ -0.25
MSH6-204ENST00000445503 PIK3C2AO00443 1686 aa13.5□□□□□ -0.25
MSH6-204ENST00000445503 GRIN1Q05586 938 aa13.5□□□□□ -0.25
MSH6-204ENST00000445503 PDE4BQ07343 736 aa13.5□□□□□ -0.25
MSH6-204ENST00000445503 TTLL11Q8NHH1 800 aa13.5□□□□□ -0.25
MSH6-204ENST00000445503 SOWAHDA6NJG2 315 aa13.49□□□□□ -0.25
MSH6-204ENST00000445503 PDE8AO60658 829 aa13.49□□□□□ -0.25
MSH6-204ENST00000445503 EIF3JO75822 258 aaKnown RBP13.49□□□□□ -0.25
MSH6-204ENST00000445503 GYS2P54840 703 aa13.49□□□□□ -0.25
MSH6-204ENST00000445503 TMTC2Q8N394 836 aa13.49□□□□□ -0.25
MSH6-204ENST00000445503 TRIM34Q9BYJ4 488 aa13.49□□□□□ -0.25
MSH6-204ENST00000445503 TAB2Q9NYJ8 693 aa13.49□□□□□ -0.25
MSH6-204ENST00000445503 KDM6AO15550 1401 aaPredicted RBP13.49□□□□□ -0.25
MSH6-204ENST00000445503 KRT2P35908 639 aa13.49□□□□□ -0.25
MSH6-204ENST00000445503 CHMP4BP1P59074 171 aa13.49□□□□□ -0.25
MSH6-204ENST00000445503 FANCBQ8NB91 859 aa13.49□□□□□ -0.25
MSH6-204ENST00000445503 CCDC47Q96A33 483 aaKnown RBP13.49□□□□□ -0.25
MSH6-204ENST00000445503 EPSTI1Q96J88 318 aa13.49□□□□□ -0.25
MSH6-204ENST00000445503 SEC31BQ9NQW1 1179 aa13.49□□□□□ -0.25
MSH6-204ENST00000445503 VPS18Q9P253 973 aa13.49□□□□□ -0.25
MSH6-204ENST00000445503 RGPD8O14715 1765 aaPredicted RBP13.49□□□□□ -0.25
MSH6-204ENST00000445503 MAGEB6P1A0A0J9YX57 407 aa13.49□□□□□ -0.25
MSH6-204ENST00000445503 SMC1AQ14683 1233 aaKnown RBP13.49□□□□□ -0.25
MSH6-204ENST00000445503 MTF1Q14872 753 aa13.49□□□□□ -0.25
MSH6-204ENST00000445503 UBE3CQ15386 1083 aa13.49□□□□□ -0.25
MSH6-204ENST00000445503 USP49Q70CQ1 688 aa13.49□□□□□ -0.25
MSH6-204ENST00000445503 OXER1Q8TDS5 423 aa13.49□□□□□ -0.25
MSH6-204ENST00000445503 WDR24Q96S15 920 aa13.49□□□□□ -0.25
MSH6-204ENST00000445503 STRBPQ96SI9 672 aaKnown RBP13.49□□□□□ -0.25
MSH6-204ENST00000445503 ZNHIT6Q9NWK9 470 aaKnown RBP13.49□□□□□ -0.25
MSH6-204ENST00000445503 SYNRGQ9UMZ2 1314 aa13.49□□□□□ -0.25
MSH6-204ENST00000445503 XRN1Q8IZH2 1706 aaKnown RBP13.48□□□□□ -0.25
MSH6-204ENST00000445503 CTAGE9A4FU28 777 aa13.48□□□□□ -0.25
MSH6-204ENST00000445503 RESP18Q5W5W9 173 aa13.48□□□□□ -0.25
MSH6-204ENST00000445503 ATG3Q9NT62 314 aa13.48□□□□□ -0.25
MSH6-204ENST00000445503 TSPY2A6NKD2 308 aa13.48□□□□□ -0.25
MSH6-204ENST00000445503 PIK3AP1Q6ZUJ8 805 aa13.48□□□□□ -0.25
MSH6-204ENST00000445503 LCORLQ8N3X6 602 aa13.48□□□□□ -0.25
MSH6-204ENST00000445503 CAPZA3Q96KX2 299 aa13.48□□□□□ -0.25
MSH6-204ENST00000445503 ACBD3Q9H3P7 528 aa13.48□□□□□ -0.25
MSH6-204ENST00000445503 CWC15Q9P013 229 aaKnown RBP13.48□□□□□ -0.25
MSH6-204ENST00000445503 NIP7Q9Y221 180 aaKnown RBP eCLIP13.48□□□□□ -0.25
MSH6-204ENST00000445503 ZBTB1Q9Y2K1 713 aa13.48□□□□□ -0.25
MSH6-204ENST00000445503 UBN2Q6ZU65 1347 aa13.48□□□□□ -0.25
MSH6-204ENST00000445503 EFCAB8A8MWE9 144 aa13.48□□□□□ -0.25
MSH6-204ENST00000445503 NCAPHQ15003 741 aa13.48□□□□□ -0.25
MSH6-204ENST00000445503 CAVIN4Q5BKX8 364 aa13.48□□□□□ -0.25
MSH6-204ENST00000445503 GIGYF2Q6Y7W6 1299 aaKnown RBP13.48□□□□□ -0.25
MSH6-204ENST00000445503 NLRP10Q86W26 655 aa13.48□□□□□ -0.25
MSH6-204ENST00000445503 SLF1Q9BQI6 1058 aa13.48□□□□□ -0.25
MSH6-204ENST00000445503 AGXT2Q9BYV1 514 aa13.48□□□□□ -0.25
MSH6-204ENST00000445503 FAM208AQ9UK61 1670 aaKnown RBP13.48□□□□□ -0.25
MSH6-204ENST00000445503 CTAGE15A4D2H0 777 aa13.47□□□□□ -0.25
MSH6-204ENST00000445503 CTAGE8P0CG41 777 aa13.47□□□□□ -0.25
MSH6-204ENST00000445503 DNA2P51530 1060 aa13.47□□□□□ -0.25
MSH6-204ENST00000445503 CTAGE6Q86UF2 777 aa13.47□□□□□ -0.25
MSH6-204ENST00000445503 CTAGE4Q8IX94 777 aa13.47□□□□□ -0.25
MSH6-204ENST00000445503 TMEM94Q12767 1356 aa13.47□□□□□ -0.25
MSH6-204ENST00000445503 CYP2D7A0A087X1C5 515 aa13.47□□□□□ -0.25
MSH6-204ENST00000445503 CDC25AP30304 524 aa13.47□□□□□ -0.25
MSH6-204ENST00000445503 UBXN1Q04323 297 aa13.47□□□□□ -0.25
MSH6-204ENST00000445503 FMR1Q06787 632 aaKnown RBP eCLIP13.47□□□□□ -0.259e-7■■■■□ 21.8
MSH6-204ENST00000445503 STIM1Q13586 685 aa13.47□□□□□ -0.25
MSH6-204ENST00000445503 BPIFA3Q9BQP9 254 aa13.47□□□□□ -0.25
MSH6-204ENST00000445503 LY9Q9HBG7 655 aa13.47□□□□□ -0.25
MSH6-204ENST00000445503 EXOC5O00471 708 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms