RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 MORC2Q9Y6X9 1032 aaPredicted RBP2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 PLD2O14939 933 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 PRPF3O43395 683 aaKnown RBP2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 MYBL2P10244 700 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 ADCY1Q08828 1119 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 NCAPHQ15003 741 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 FAM83BQ5T0W9 1011 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 DMRTA1Q5VZB9 504 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 RUFY4Q6ZNE9 571 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 MMS22LQ6ZRQ5 1243 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 TTC6Q86TZ1 520 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 TPH2Q8IWU9 490 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 CCDC116Q8IYX3 515 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 AFAP1L2Q8N4X5 818 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 C3orf58Q8NDZ4 430 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 PJA1Q8NG27 643 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 PARD3BQ8TEW8 1205 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 ZDHHC1Q8WTX9 485 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 CDK5RAP3Q96JB5 506 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 HSH2DQ96JZ2 352 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 PUS7LQ9H0K6 701 aaKnown RBP2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 PLCB1Q9NQ66 1216 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 LUZP4Q9P127 313 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 ZNRF3Q9ULT6 936 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 FRMPD2Q68DX3 1309 aaPredicted RBP2.84□□□□□ -1.95
CCDC88A-208ENST00000444458 A0A1W2PP55 124 aa2.84□□□□□ -1.95
CCDC88A-208ENST00000444458 XYLBO75191 536 aa2.84□□□□□ -1.95
CCDC88A-208ENST00000444458 IL2RAP01589 272 aa2.84□□□□□ -1.95
CCDC88A-208ENST00000444458 TFE3P19532 575 aaPredicted RBP2.84□□□□□ -1.95
CCDC88A-208ENST00000444458 POU3F3P20264 500 aaPredicted RBP2.84□□□□□ -1.95
CCDC88A-208ENST00000444458 FLT3P36888 993 aa2.84□□□□□ -1.95
CCDC88A-208ENST00000444458 HIRAP54198 1017 aaPredicted RBP2.84□□□□□ -1.95
CCDC88A-208ENST00000444458 STAT4Q14765 748 aa2.84□□□□□ -1.95
CCDC88A-208ENST00000444458 TOMM20Q15388 145 aa2.84□□□□□ -1.95
CCDC88A-208ENST00000444458 FNDC3BQ53EP0 1204 aaKnown RBP2.84□□□□□ -1.95
CCDC88A-208ENST00000444458 NXNQ6DKJ4 435 aa2.84□□□□□ -1.95
CCDC88A-208ENST00000444458 CXorf57Q6NSI4 855 aaKnown RBP2.84□□□□□ -1.95
CCDC88A-208ENST00000444458 XKR5Q6UX68 686 aa2.84□□□□□ -1.95
CCDC88A-208ENST00000444458 RINLQ6ZS11 566 aa2.84□□□□□ -1.95
CCDC88A-208ENST00000444458 ANKRD13DQ6ZTN6 518 aa2.84□□□□□ -1.95
CCDC88A-208ENST00000444458 STRA8Q7Z7C7 330 aa2.84□□□□□ -1.95
CCDC88A-208ENST00000444458 NCAPG2Q86XI2 1143 aa2.84□□□□□ -1.95
CCDC88A-208ENST00000444458 MYLK4Q86YV6 388 aaPredicted RBP2.84□□□□□ -1.95
CCDC88A-208ENST00000444458 RTFDC1Q9BY42 306 aaPredicted RBP2.84□□□□□ -1.95
CCDC88A-208ENST00000444458 NCOA5Q9HCD5 579 aaKnown RBP2.84□□□□□ -1.95
CCDC88A-208ENST00000444458 DACH1Q9UI36 760 aa2.84□□□□□ -1.95
CCDC88A-208ENST00000444458 SPEF1Q9Y4P9 236 aa2.84□□□□□ -1.95
CCDC88A-208ENST00000444458 SLC12A7Q9Y666 1083 aa2.84□□□□□ -1.95
CCDC88A-208ENST00000444458 FIBPO43427 364 aa2.84□□□□□ -1.95
CCDC88A-208ENST00000444458 COL6A1P12109 1028 aa2.84□□□□□ -1.95
CCDC88A-208ENST00000444458 TRIM27P14373 513 aa2.84□□□□□ -1.95
CCDC88A-208ENST00000444458 GARTP22102 1010 aa2.84□□□□□ -1.95
CCDC88A-208ENST00000444458 BCAMP50895 628 aa2.84□□□□□ -1.95
CCDC88A-208ENST00000444458 CLCQ05315 142 aa2.84□□□□□ -1.95
CCDC88A-208ENST00000444458 MAP7Q14244 749 aa2.84□□□□□ -1.95
CCDC88A-208ENST00000444458 ARSJQ5FYB0 599 aaPredicted RBP2.84□□□□□ -1.95
CCDC88A-208ENST00000444458 SLC27A3Q5K4L6 730 aa2.84□□□□□ -1.95
CCDC88A-208ENST00000444458 REC114Q7Z4M0 266 aa2.84□□□□□ -1.95
CCDC88A-208ENST00000444458 TRIM42Q8IWZ5 723 aa2.84□□□□□ -1.95
CCDC88A-208ENST00000444458 CNTD1Q8N815 330 aa2.84□□□□□ -1.95
CCDC88A-208ENST00000444458 ZSCAN1Q8NBB4 408 aa2.84□□□□□ -1.95
CCDC88A-208ENST00000444458 USP33Q8TEY7 942 aa2.84□□□□□ -1.95
CCDC88A-208ENST00000444458 GATAD2BQ8WXI9 593 aa2.84□□□□□ -1.95
CCDC88A-208ENST00000444458 TTC17Q96AE7 1141 aa2.84□□□□□ -1.95
CCDC88A-208ENST00000444458 XAGE2Q96GT9 111 aa2.84□□□□□ -1.95
CCDC88A-208ENST00000444458 LATS2Q9NRM7 1088 aa2.84□□□□□ -1.95
CCDC88A-208ENST00000444458 ZFATQ9P243 1243 aa2.84□□□□□ -1.95
CCDC88A-208ENST00000444458 NOL7Q9UMY1 257 aaKnown RBP2.84□□□□□ -1.95
CCDC88A-208ENST00000444458 PCDHB14Q9Y5E9 798 aa2.84□□□□□ -1.95
CCDC88A-208ENST00000444458 SLC4A7Q9Y6M7 1214 aa2.84□□□□□ -1.95
CCDC88A-208ENST00000444458 GRIN3BO60391 1043 aa2.84□□□□□ -1.96
CCDC88A-208ENST00000444458 PF4V1P10720 104 aa2.84□□□□□ -1.96
CCDC88A-208ENST00000444458 ZNF157P51786 506 aaPredicted RBP2.84□□□□□ -1.96
CCDC88A-208ENST00000444458 PRELPP51888 382 aa2.84□□□□□ -1.96
CCDC88A-208ENST00000444458 CENPCQ03188 943 aa2.84□□□□□ -1.96
CCDC88A-208ENST00000444458 LONRF2Q1L5Z9 754 aa2.84□□□□□ -1.96
CCDC88A-208ENST00000444458 PPP1R26Q5T8A7 1209 aaPredicted RBP2.84□□□□□ -1.96
CCDC88A-208ENST00000444458 KIAA1211LQ6NV74 962 aa2.84□□□□□ -1.96
CCDC88A-208ENST00000444458 AGMOQ6ZNB7 445 aa2.84□□□□□ -1.96
CCDC88A-208ENST00000444458 COG1Q8WTW3 980 aa2.84□□□□□ -1.96
CCDC88A-208ENST00000444458 SKA1Q96BD8 255 aa2.84□□□□□ -1.96
CCDC88A-208ENST00000444458 ZNF669Q96BR6 464 aaPredicted RBP2.84□□□□□ -1.96
CCDC88A-208ENST00000444458 RSPH9Q9H1X1 276 aaPredicted RBP2.84□□□□□ -1.96
CCDC88A-208ENST00000444458 EIF4ENIF1Q9NRA8 985 aaKnown RBP2.84□□□□□ -1.96
CCDC88A-208ENST00000444458 NDOR1Q9UHB4 597 aa2.84□□□□□ -1.96
CCDC88A-208ENST00000444458 DMTF1Q9Y222 760 aa2.84□□□□□ -1.96
CCDC88A-208ENST00000444458 FRMD4BQ9Y2L6 1034 aa2.84□□□□□ -1.96
CCDC88A-208ENST00000444458 TRBV23-1A0A0A0MS06 115 aa2.83□□□□□ -1.96
CCDC88A-208ENST00000444458 RFPL3O75679 317 aa2.83□□□□□ -1.96
CCDC88A-208ENST00000444458 TXLNAP40222 546 aa2.83□□□□□ -1.96
CCDC88A-208ENST00000444458 CASP7P55210 303 aa2.83□□□□□ -1.96
CCDC88A-208ENST00000444458 PPP2R3AQ06190 1150 aa2.83□□□□□ -1.96
CCDC88A-208ENST00000444458 TRIM14Q14142 442 aa2.83□□□□□ -1.96
CCDC88A-208ENST00000444458 PDCD2Q16342 344 aaPredicted RBP2.83□□□□□ -1.96
CCDC88A-208ENST00000444458 KIAA0319Q5VV43 1072 aa2.83□□□□□ -1.96
CCDC88A-208ENST00000444458 ERAP2Q6P179 960 aa2.83□□□□□ -1.96
CCDC88A-208ENST00000444458 JMYQ8N9B5 988 aa2.83□□□□□ -1.96
CCDC88A-208ENST00000444458 ANKRD24Q8TF21 1146 aa2.83□□□□□ -1.96
CCDC88A-208ENST00000444458 PLD4Q96BZ4 506 aa2.83□□□□□ -1.96
CCDC88A-208ENST00000444458 MPP4Q96JB8 637 aa2.83□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms