RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 LRP2BPQ9P2M1 347 aa9.54□□□□□ -0.88
CD44-211ENST00000442151 SNCAIPQ9Y6H5 919 aa9.54□□□□□ -0.88
CD44-211ENST00000442151 AOX1Q06278 1338 aa9.54□□□□□ -0.88
CD44-211ENST00000442151 GPR75-ASB3A0A0A6YYF3 556 aa9.54□□□□□ -0.88
CD44-211ENST00000442151 TBC1D12O60347 775 aa9.54□□□□□ -0.88
CD44-211ENST00000442151 CTNND1O60716 968 aaKnown RBP9.54□□□□□ -0.88
CD44-211ENST00000442151 PABPC4Q13310 644 aaKnown RBP eCLIP9.54□□□□□ -0.88
CD44-211ENST00000442151 DIXDC1Q155Q3 683 aa9.54□□□□□ -0.88
CD44-211ENST00000442151 TTC39AQ5SRH9 613 aa9.54□□□□□ -0.88
CD44-211ENST00000442151 POTEEQ6S8J3 1075 aa9.54□□□□□ -0.88
CD44-211ENST00000442151 ERC1Q8IUD2 1116 aa9.54□□□□□ -0.88
CD44-211ENST00000442151 SPATA5Q8NB90 893 aa9.54□□□□□ -0.88
CD44-211ENST00000442151 ZKSCAN4Q969J2 545 aaPredicted RBP9.54□□□□□ -0.88
CD44-211ENST00000442151 GCC1Q96CN9 775 aa9.54□□□□□ -0.88
CD44-211ENST00000442151 PARK7Q99497 189 aaKnown RBP9.54□□□□□ -0.88
CD44-211ENST00000442151 RAI14Q9P0K7 980 aa9.54□□□□□ -0.88
CD44-211ENST00000442151 KCNH4Q9UQ05 1017 aa9.54□□□□□ -0.88
CD44-211ENST00000442151 SLC45A1Q9Y2W3 748 aa9.54□□□□□ -0.88
CD44-211ENST00000442151 MROH7-TTC4A0A0A0MT08 1334 aa9.53□□□□□ -0.88
CD44-211ENST00000442151 BTBD19C9JJ37 291 aa9.53□□□□□ -0.88
CD44-211ENST00000442151 IRF6O14896 467 aa9.53□□□□□ -0.88
CD44-211ENST00000442151 BCAR3O75815 825 aa9.53□□□□□ -0.88
CD44-211ENST00000442151 ADORA1P30542 326 aa9.53□□□□□ -0.88
CD44-211ENST00000442151 BTDP43251 543 aa9.53□□□□□ -0.88
CD44-211ENST00000442151 RGS3P49796 1198 aa9.53□□□□□ -0.88
CD44-211ENST00000442151 MAP3K10Q02779 954 aa9.53□□□□□ -0.88
CD44-211ENST00000442151 SCYL3Q8IZE3 742 aa9.53□□□□□ -0.88
CD44-211ENST00000442151 CLUAP1Q96AJ1 413 aa9.53□□□□□ -0.88
CD44-211ENST00000442151 ARMC5Q96C12 935 aa9.53□□□□□ -0.88
CD44-211ENST00000442151 R3HDMLQ9H3Y0 253 aa9.53□□□□□ -0.88
CD44-211ENST00000442151 GINM1Q9NU53 330 aa9.53□□□□□ -0.88
CD44-211ENST00000442151 MYH13Q9UKX3 1938 aa9.52□□□□□ -0.88
CD44-211ENST00000442151 SURF6O75683 361 aaKnown RBP9.52□□□□□ -0.89
CD44-211ENST00000442151 ARID4AP29374 1257 aaPredicted RBP9.52□□□□□ -0.89
CD44-211ENST00000442151 RASGRF1Q13972 1273 aa9.52□□□□□ -0.89
CD44-211ENST00000442151 SLC9C1Q4G0N8 1177 aa9.52□□□□□ -0.89
CD44-211ENST00000442151 Q6ZNB5 142 aa9.52□□□□□ -0.89
CD44-211ENST00000442151 TMEM57Q8N5G2 664 aa9.52□□□□□ -0.89
CD44-211ENST00000442151 KHSRPQ92945 711 aaKnown RBP eCLIP9.52□□□□□ -0.89
CD44-211ENST00000442151 ZNF512BQ96KM6 892 aaPredicted RBP9.52□□□□□ -0.89
CD44-211ENST00000442151 TRIM34Q9BYJ4 488 aa9.52□□□□□ -0.89
CD44-211ENST00000442151 OSBPL5Q9H0X9 879 aaPredicted RBP9.52□□□□□ -0.89
CD44-211ENST00000442151 DHX36Q9H2U1 1008 aaKnown RBP9.52□□□□□ -0.89
CD44-211ENST00000442151 AS3MTQ9HBK9 375 aa9.52□□□□□ -0.89
CD44-211ENST00000442151 FAM198AQ9UFP1 575 aa9.52□□□□□ -0.89
CD44-211ENST00000442151 TK2O00142 265 aa9.52□□□□□ -0.89
CD44-211ENST00000442151 INPP5BP32019 993 aa9.52□□□□□ -0.89
CD44-211ENST00000442151 MECOMQ03112 1051 aa9.52□□□□□ -0.89
CD44-211ENST00000442151 PRPF38BQ5VTL8 546 aaKnown RBP9.52□□□□□ -0.89
CD44-211ENST00000442151 FAM43AQ8N2R8 423 aa9.52□□□□□ -0.89
CD44-211ENST00000442151 SSH3Q8TE77 659 aa9.52□□□□□ -0.89
CD44-211ENST00000442151 HMG20BQ9P0W2 317 aa9.52□□□□□ -0.89
CD44-211ENST00000442151 HERC5Q9UII4 1024 aaKnown RBP9.52□□□□□ -0.89
CD44-211ENST00000442151 PNMA3Q9UL41 463 aa9.52□□□□□ -0.89
CD44-211ENST00000442151 AK9Q5TCS8 1911 aa9.51□□□□□ -0.89
CD44-211ENST00000442151 LAMB1P07942 1786 aa9.51□□□□□ -0.89
CD44-211ENST00000442151 PDHXO00330 501 aa9.51□□□□□ -0.89
CD44-211ENST00000442151 FCGRTP55899 365 aa9.51□□□□□ -0.89
CD44-211ENST00000442151 LACTBP83111 547 aaPredicted RBP9.51□□□□□ -0.89
CD44-211ENST00000442151 NFIAQ12857 509 aa9.51□□□□□ -0.89
CD44-211ENST00000442151 SLC4A8Q2Y0W8 1093 aa9.51□□□□□ -0.89
CD44-211ENST00000442151 NAA16Q6N069 864 aaPredicted RBP9.51□□□□□ -0.89
CD44-211ENST00000442151 FOXP4Q8IVH2 680 aaPredicted RBP9.51□□□□□ -0.89
CD44-211ENST00000442151 ITPRIPQ8IWB1 547 aa9.51□□□□□ -0.89
CD44-211ENST00000442151 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.51□□□□□ -0.89
CD44-211ENST00000442151 NKX2-3Q8TAU0 364 aa9.51□□□□□ -0.89
CD44-211ENST00000442151 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.51□□□□□ -0.89
CD44-211ENST00000442151 PI4KBQ9UBF8 816 aa9.51□□□□□ -0.89
CD44-211ENST00000442151 NOP58Q9Y2X3 529 aaKnown RBP9.51□□□□□ -0.89
CD44-211ENST00000442151 ZHX2Q9Y6X8 837 aa9.51□□□□□ -0.89
CD44-211ENST00000442151 HMMRO75330 724 aa9.5□□□□□ -0.89
CD44-211ENST00000442151 FMNL1O95466 1100 aaPredicted RBP9.5□□□□□ -0.89
CD44-211ENST00000442151 PPP4CP60510 307 aa9.5□□□□□ -0.89
CD44-211ENST00000442151 UBXN2AP68543 259 aa9.5□□□□□ -0.89
CD44-211ENST00000442151 PICALMQ13492 652 aa9.5□□□□□ -0.89
CD44-211ENST00000442151 C17orf99Q6UX52 265 aa9.5□□□□□ -0.89
CD44-211ENST00000442151 TEX11Q8IYF3 940 aa9.5□□□□□ -0.89
CD44-211ENST00000442151 NSUN4Q96CB9 384 aaKnown RBP9.5□□□□□ -0.89
CD44-211ENST00000442151 TRIM47Q96LD4 638 aa9.5□□□□□ -0.89
CD44-211ENST00000442151 PHF20L1A8MW92 1017 aa9.49□□□□□ -0.89
CD44-211ENST00000442151 ZBTB7BO15156 539 aaPredicted RBP9.49□□□□□ -0.89
CD44-211ENST00000442151 PTPRAP18433 802 aa9.49□□□□□ -0.89
CD44-211ENST00000442151 OSBPP22059 807 aa9.49□□□□□ -0.89
CD44-211ENST00000442151 TNNI3KQ59H18 835 aa9.49□□□□□ -0.89
CD44-211ENST00000442151 RAET1EQ8TD07 263 aa9.49□□□□□ -0.89
CD44-211ENST00000442151 FPGT-TNNI3KV9GXZ4 949 aa9.49□□□□□ -0.89
CD44-211ENST00000442151 ZBED9Q6R2W3 1325 aa9.49□□□□□ -0.89
CD44-211ENST00000442151 A0A0G2JLL6 359 aaPredicted RBP9.49□□□□□ -0.89
CD44-211ENST00000442151 PNMA6EA0A0J9YXQ4 647 aa9.49□□□□□ -0.89
CD44-211ENST00000442151 HLA-DOAP06340 250 aa9.49□□□□□ -0.89
CD44-211ENST00000442151 PSMC4P43686 418 aa9.49□□□□□ -0.89
CD44-211ENST00000442151 TTF1Q15361 905 aaPredicted RBP9.49□□□□□ -0.89
CD44-211ENST00000442151 GADL1Q6ZQY3 521 aa9.49□□□□□ -0.89
CD44-211ENST00000442151 PRRT2Q7Z6L0 340 aaPredicted RBP9.49□□□□□ -0.89
CD44-211ENST00000442151 RPAP2Q8IXW5 612 aaPredicted RBP9.49□□□□□ -0.89
CD44-211ENST00000442151 AFG3L2Q9Y4W6 797 aa9.49□□□□□ -0.89
CD44-211ENST00000442151 COL2A1P02458 1487 aaPredicted RBP9.49□□□□□ -0.89
CD44-211ENST00000442151 MYH2Q9UKX2 1941 aa9.48□□□□□ -0.89
CD44-211ENST00000442151 USP17L5A8MUK1 530 aa9.48□□□□□ -0.89
CD44-211ENST00000442151 ARHGAP33O14559 1287 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms