RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 NUTM2GQ5VZR2 741 aa7.97□□□□□ -1.13
VPS53-204ENST00000437048 USP48Q86UV5 1035 aa7.97□□□□□ -1.13
VPS53-204ENST00000437048 MKNK2Q9HBH9 465 aa7.97□□□□□ -1.13
VPS53-204ENST00000437048 NDUFA13Q9P0J0 144 aa7.97□□□□□ -1.13
VPS53-204ENST00000437048 H0YCG3 227 aa7.97□□□□□ -1.13
VPS53-204ENST00000437048 HMOX1P09601 288 aa7.97□□□□□ -1.13
VPS53-204ENST00000437048 KCNJ6P48051 423 aa7.97□□□□□ -1.13
VPS53-204ENST00000437048 ZNF75DP51815 510 aa7.97□□□□□ -1.13
VPS53-204ENST00000437048 TRIM11Q96F44 468 aa7.97□□□□□ -1.13
VPS53-204ENST00000437048 COPG1Q9Y678 874 aaKnown RBP7.97□□□□□ -1.13
VPS53-204ENST00000437048 ADGBQ8N7X0 1667 aa7.97□□□□□ -1.13
VPS53-204ENST00000437048 MYO10Q9HD67 2058 aa7.97□□□□□ -1.13
VPS53-204ENST00000437048 IPO5O00410 1097 aaKnown RBP7.97□□□□□ -1.13
VPS53-204ENST00000437048 ESYT1Q9BSJ8 1104 aa7.97□□□□□ -1.13
VPS53-204ENST00000437048 TTI1O43156 1089 aa7.97□□□□□ -1.13
VPS53-204ENST00000437048 SERPINB10P48595 397 aa7.97□□□□□ -1.13
VPS53-204ENST00000437048 ARHGEF18Q6ZSZ5 1173 aa7.97□□□□□ -1.13
VPS53-204ENST00000437048 GSTA5Q7RTV2 222 aa7.97□□□□□ -1.13
VPS53-204ENST00000437048 CUEDC2Q9H467 287 aa7.97□□□□□ -1.13
VPS53-204ENST00000437048 PPCSQ9HAB8 311 aa7.97□□□□□ -1.13
VPS53-204ENST00000437048 CCT6BQ92526 530 aa7.97□□□□□ -1.13
VPS53-204ENST00000437048 SPDL1Q96EA4 605 aa7.97□□□□□ -1.13
VPS53-204ENST00000437048 TMEM87BQ96K49 555 aa7.97□□□□□ -1.13
VPS53-204ENST00000437048 STOML1Q9UBI4 398 aa7.97□□□□□ -1.13
VPS53-204ENST00000437048 WWC3Q9ULE0 1092 aa7.97□□□□□ -1.13
VPS53-204ENST00000437048 ORC6Q9Y5N6 252 aa7.97□□□□□ -1.13
VPS53-204ENST00000437048 BIRC3Q13489 604 aa7.97□□□□□ -1.13
VPS53-204ENST00000437048 CDC5LQ99459 802 aaKnown RBP7.97□□□□□ -1.13
VPS53-204ENST00000437048 NUTM2BA6NNL0 878 aaPredicted RBP7.97□□□□□ -1.13
VPS53-204ENST00000437048 NUTM2EB1AL46 878 aaPredicted RBP7.97□□□□□ -1.13
VPS53-204ENST00000437048 PRIM1P49642 420 aaKnown RBP7.97□□□□□ -1.13
VPS53-204ENST00000437048 NCBP1Q09161 790 aaKnown RBP7.97□□□□□ -1.13
VPS53-204ENST00000437048 KRR1Q13601 381 aaKnown RBP7.97□□□□□ -1.13
VPS53-204ENST00000437048 IFT122Q9HBG6 1241 aa7.97□□□□□ -1.13
VPS53-204ENST00000437048 EXOC7Q9UPT5 735 aa7.97□□□□□ -1.13
VPS53-204ENST00000437048 BCAR3O75815 825 aa7.97□□□□□ -1.13
VPS53-204ENST00000437048 MKRN3Q13064 507 aaKnown RBP7.97□□□□□ -1.13
VPS53-204ENST00000437048 HHATQ5VTY9 493 aa7.97□□□□□ -1.13
VPS53-204ENST00000437048 HLA-DOAP06340 250 aa7.97□□□□□ -1.13
VPS53-204ENST00000437048 TRIM27P14373 513 aa7.97□□□□□ -1.13
VPS53-204ENST00000437048 EPSTI1Q96J88 318 aa7.97□□□□□ -1.13
VPS53-204ENST00000437048 ATF3P18847 181 aa7.96□□□□□ -1.13
VPS53-204ENST00000437048 SEPT10Q9P0V9 454 aa7.96□□□□□ -1.13
VPS53-204ENST00000437048 USP16Q9Y5T5 823 aa7.96□□□□□ -1.13
VPS53-204ENST00000437048 ITIH3Q06033 890 aa7.96□□□□□ -1.13
VPS53-204ENST00000437048 TMEM67Q5HYA8 995 aa7.96□□□□□ -1.13
VPS53-204ENST00000437048 THOC1Q96FV9 657 aaKnown RBP7.96□□□□□ -1.13
VPS53-204ENST00000437048 SPC25Q9HBM1 224 aa7.96□□□□□ -1.13
VPS53-204ENST00000437048 OAS2P29728 719 aaKnown RBP7.96□□□□□ -1.13
VPS53-204ENST00000437048 EPHB4P54760 987 aa7.96□□□□□ -1.13
VPS53-204ENST00000437048 OSBPL9Q96SU4 736 aa7.96□□□□□ -1.13
VPS53-204ENST00000437048 DCTPP1Q9H773 170 aa7.96□□□□□ -1.13
VPS53-204ENST00000437048 MTMR7Q9Y216 660 aa7.96□□□□□ -1.13
VPS53-204ENST00000437048 KDM2BQ8NHM5 1336 aa7.96□□□□□ -1.13
VPS53-204ENST00000437048 RGS16O15492 202 aaPredicted RBP7.96□□□□□ -1.14
VPS53-204ENST00000437048 NLRP6P59044 892 aa7.96□□□□□ -1.14
VPS53-204ENST00000437048 AOPEPQ8N6M6 819 aa7.96□□□□□ -1.14
VPS53-204ENST00000437048 ARHGEF2Q92974 986 aaKnown RBP7.96□□□□□ -1.14
VPS53-204ENST00000437048 UIMC1Q96RL1 719 aa7.96□□□□□ -1.14
VPS53-204ENST00000437048 SELENOSQ9BQE4 189 aa7.96□□□□□ -1.14
VPS53-204ENST00000437048 ABCF3Q9NUQ8 709 aa7.96□□□□□ -1.14
VPS53-204ENST00000437048 PCP11498 1178 aaKnown RBP7.96□□□□□ -1.14
VPS53-204ENST00000437048 MCMDC2Q4G0Z9 681 aa7.96□□□□□ -1.14
VPS53-204ENST00000437048 CCDC197Q8NCU1 140 aa7.96□□□□□ -1.14
VPS53-204ENST00000437048 USP6NLQ92738 828 aa7.96□□□□□ -1.14
VPS53-204ENST00000437048 CRNKL1Q9BZJ0 848 aaKnown RBP7.96□□□□□ -1.14
VPS53-204ENST00000437048 NOP53Q9NZM5 478 aaKnown RBP7.96□□□□□ -1.14
VPS53-204ENST00000437048 ADGRL1O94910 1474 aa7.96□□□□□ -1.14
VPS53-204ENST00000437048 COG7P83436 770 aa7.96□□□□□ -1.14
VPS53-204ENST00000437048 IL9RQ01113 521 aa7.96□□□□□ -1.14
VPS53-204ENST00000437048 MAP3K10Q02779 954 aa7.96□□□□□ -1.14
VPS53-204ENST00000437048 UBXN1Q04323 297 aa7.96□□□□□ -1.14
VPS53-204ENST00000437048 STK3Q13188 491 aa7.96□□□□□ -1.14
VPS53-204ENST00000437048 TRIM60Q495X7 471 aa7.96□□□□□ -1.14
VPS53-204ENST00000437048 KRT79Q5XKE5 535 aa7.96□□□□□ -1.14
VPS53-204ENST00000437048 UBLCP1Q8WVY7 318 aaPredicted RBP7.96□□□□□ -1.14
VPS53-204ENST00000437048 RIC8AQ9NPQ8 531 aa7.96□□□□□ -1.14
VPS53-204ENST00000437048 DCTN3O75935 186 aa7.96□□□□□ -1.14
VPS53-204ENST00000437048 WTAPQ15007 396 aa7.96□□□□□ -1.14
VPS53-204ENST00000437048 RASIP1Q5U651 963 aa7.96□□□□□ -1.14
VPS53-204ENST00000437048 GALNT17Q6IS24 598 aa7.96□□□□□ -1.14
VPS53-204ENST00000437048 ZNF444Q8N0Y2 327 aaPredicted RBP7.96□□□□□ -1.14
VPS53-204ENST00000437048 THEMISQ8N1K5 641 aaPredicted RBP7.96□□□□□ -1.14
VPS53-204ENST00000437048 ARMC2Q8NEN0 867 aa7.96□□□□□ -1.14
VPS53-204ENST00000437048 MTRQ99707 1265 aa7.96□□□□□ -1.14
VPS53-204ENST00000437048 GCC2Q8IWJ2 1684 aa7.96□□□□□ -1.14
VPS53-204ENST00000437048 KRT5P13647 590 aa7.96□□□□□ -1.14
VPS53-204ENST00000437048 C4BPBP20851 252 aa7.96□□□□□ -1.14
VPS53-204ENST00000437048 PCF11O94913 1555 aaKnown RBP7.96□□□□□ -1.14
VPS53-204ENST00000437048 HARSP12081 509 aaKnown RBP7.96□□□□□ -1.14
VPS53-204ENST00000437048 MATR3P43243 847 aaKnown RBP eCLIP7.96□□□□□ -1.149e-10■■□□□ 13.9
VPS53-204ENST00000437048 DUOX2Q9NRD8 1548 aa7.96□□□□□ -1.14
VPS53-204ENST00000437048 SERPINB4P48594 390 aa7.96□□□□□ -1.14
VPS53-204ENST00000437048 LRRC8BQ6P9F7 803 aa7.95□□□□□ -1.14
VPS53-204ENST00000437048 RUFY3Q7L099 469 aa7.95□□□□□ -1.14
VPS53-204ENST00000437048 SMIM24O75264 130 aa7.95□□□□□ -1.14
VPS53-204ENST00000437048 ZNF569Q5MCW4 686 aa7.95□□□□□ -1.14
VPS53-204ENST00000437048 KAT14Q9H8E8 782 aa7.95□□□□□ -1.14
VPS53-204ENST00000437048 GUCA1BQ9UMX6 200 aa7.95□□□□□ -1.14
VPS53-204ENST00000437048 DIS3Q9Y2L1 958 aaKnown RBP7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms