RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 ANO3Q9BYT9 981 aa13.47□□□□□ -0.25
CCDC88A-207ENST00000436346 MTUS1Q9ULD2 1270 aa13.47□□□□□ -0.25
CCDC88A-207ENST00000436346 DNAJC21Q5F1R6 531 aaKnown RBP13.47□□□□□ -0.25
CCDC88A-207ENST00000436346 PPP1R21Q6ZMI0 780 aa13.47□□□□□ -0.25
CCDC88A-207ENST00000436346 LEO1Q8WVC0 666 aaPredicted RBP13.47□□□□□ -0.25
CCDC88A-207ENST00000436346 IP6K1Q92551 441 aa13.47□□□□□ -0.25
CCDC88A-207ENST00000436346 HELLSQ9NRZ9 838 aa13.47□□□□□ -0.25
CCDC88A-207ENST00000436346 GPR162Q16538 588 aa13.47□□□□□ -0.25
CCDC88A-207ENST00000436346 GPR161Q8N6U8 529 aaKnown RBP13.47□□□□□ -0.25
CCDC88A-207ENST00000436346 LUC7L2Q9Y383 392 aaKnown RBP13.47□□□□□ -0.25
CCDC88A-207ENST00000436346 RAD51AP2Q09MP3 1159 aa13.47□□□□□ -0.25
CCDC88A-207ENST00000436346 NCAPH2Q6IBW4 605 aa13.47□□□□□ -0.25
CCDC88A-207ENST00000436346 CCDC125Q86Z20 511 aa13.47□□□□□ -0.25
CCDC88A-207ENST00000436346 PLCD1P51178 756 aa13.46□□□□□ -0.25
CCDC88A-207ENST00000436346 GLT8D2Q9H1C3 349 aa13.46□□□□□ -0.25
CCDC88A-207ENST00000436346 CCDC87Q9NVE4 849 aa13.46□□□□□ -0.25
CCDC88A-207ENST00000436346 KRT19P08727 400 aa13.46□□□□□ -0.25
CCDC88A-207ENST00000436346 PPP2R5DQ14738 602 aa13.46□□□□□ -0.25
CCDC88A-207ENST00000436346 PARP10Q53GL7 1025 aa13.46□□□□□ -0.25
CCDC88A-207ENST00000436346 CNGA4Q8IV77 575 aa13.46□□□□□ -0.25
CCDC88A-207ENST00000436346 NAP1L3Q99457 506 aaPredicted RBP13.46□□□□□ -0.25
CCDC88A-207ENST00000436346 METTL22Q9BUU2 404 aaPredicted RBP13.46□□□□□ -0.25
CCDC88A-207ENST00000436346 MROH5Q6ZUA9 1318 aa13.46□□□□□ -0.25
CCDC88A-207ENST00000436346 DNM2P50570 870 aa13.46□□□□□ -0.25
CCDC88A-207ENST00000436346 KARSQ15046 597 aaKnown RBP13.46□□□□□ -0.25
CCDC88A-207ENST00000436346 ZNF710Q8N1W2 664 aa13.46□□□□□ -0.25
CCDC88A-207ENST00000436346 PLBD2Q8NHP8 589 aa13.46□□□□□ -0.25
CCDC88A-207ENST00000436346 DDX17Q92841 729 aaKnown RBP13.46□□□□□ -0.25
CCDC88A-207ENST00000436346 TTC37Q6PGP7 1564 aa13.46□□□□□ -0.26
CCDC88A-207ENST00000436346 IFNKQ9P0W0 207 aa13.46□□□□□ -0.26
CCDC88A-207ENST00000436346 PPIP5K2O43314 1243 aa13.46□□□□□ -0.26
CCDC88A-207ENST00000436346 ADCY7P51828 1080 aa13.46□□□□□ -0.26
CCDC88A-207ENST00000436346 ITIH3Q06033 890 aa13.46□□□□□ -0.26
CCDC88A-207ENST00000436346 TGFBRAP1Q8WUH2 860 aa13.46□□□□□ -0.26
CCDC88A-207ENST00000436346 CSRNP2Q9H175 543 aa13.46□□□□□ -0.26
CCDC88A-207ENST00000436346 ANGEL1Q9UNK9 670 aaKnown RBP13.46□□□□□ -0.26
CCDC88A-207ENST00000436346 UTP11Q9Y3A2 253 aaKnown RBP13.46□□□□□ -0.26
CCDC88A-207ENST00000436346 SORBS3O60504 671 aa13.45□□□□□ -0.26
CCDC88A-207ENST00000436346 EP400NLQ6ZTU2 488 aa13.45□□□□□ -0.26
CCDC88A-207ENST00000436346 CCDC24Q8N4L8 307 aa13.45□□□□□ -0.26
CCDC88A-207ENST00000436346 XAGE2Q96GT9 111 aa13.45□□□□□ -0.26
CCDC88A-207ENST00000436346 NOC4LQ9BVI4 516 aaKnown RBP13.45□□□□□ -0.26
CCDC88A-207ENST00000436346 SPC25Q9HBM1 224 aa13.45□□□□□ -0.26
CCDC88A-207ENST00000436346 RHOXF2BP0C7M4 288 aa13.45□□□□□ -0.26
CCDC88A-207ENST00000436346 CCDC89Q8N998 374 aa13.45□□□□□ -0.26
CCDC88A-207ENST00000436346 ATRIPQ8WXE1 791 aa13.45□□□□□ -0.26
CCDC88A-207ENST00000436346 RHOXF2Q9BQY4 288 aa13.45□□□□□ -0.26
CCDC88A-207ENST00000436346 SLC5A4Q9NY91 659 aa13.45□□□□□ -0.26
CCDC88A-207ENST00000436346 MKRN1Q9UHC7 482 aaKnown RBP13.45□□□□□ -0.26
CCDC88A-207ENST00000436346 CSADQ9Y600 493 aa13.45□□□□□ -0.26
CCDC88A-207ENST00000436346 CUL4BQ13620 913 aa13.45□□□□□ -0.26
CCDC88A-207ENST00000436346 POLR2DO15514 142 aaKnown RBP13.45□□□□□ -0.26
CCDC88A-207ENST00000436346 GPAA1O43292 621 aa13.45□□□□□ -0.26
CCDC88A-207ENST00000436346 APBA3O96018 575 aa13.45□□□□□ -0.26
CCDC88A-207ENST00000436346 SEC62Q99442 399 aaKnown RBP13.45□□□□□ -0.26
CCDC88A-207ENST00000436346 POLKQ9UBT6 870 aa13.45□□□□□ -0.26
CCDC88A-207ENST00000436346 STK24Q9Y6E0 443 aa13.45□□□□□ -0.26
CCDC88A-207ENST00000436346 PARD3Q8TEW0 1356 aa13.44□□□□□ -0.26
CCDC88A-207ENST00000436346 MYH15Q9Y2K3 1946 aa13.44□□□□□ -0.26
CCDC88A-207ENST00000436346 CCDC122Q5T0U0 273 aa13.44□□□□□ -0.26
CCDC88A-207ENST00000436346 ARHGEF16Q5VV41 709 aa13.44□□□□□ -0.26
CCDC88A-207ENST00000436346 SPATA5Q8NB90 893 aa13.44□□□□□ -0.26
CCDC88A-207ENST00000436346 ZBED4O75132 1171 aa13.44□□□□□ -0.26
CCDC88A-207ENST00000436346 DEXIO95424 95 aa13.44□□□□□ -0.26
CCDC88A-207ENST00000436346 FAM184BQ9ULE4 1060 aa13.44□□□□□ -0.26
CCDC88A-207ENST00000436346 PCDHB15Q9Y5E8 787 aa13.44□□□□□ -0.26
CCDC88A-207ENST00000436346 MYH13Q9UKX3 1938 aa13.44□□□□□ -0.26
CCDC88A-207ENST00000436346 ZEB2O60315 1214 aa13.44□□□□□ -0.26
CCDC88A-207ENST00000436346 PDE6BP35913 854 aa13.44□□□□□ -0.26
CCDC88A-207ENST00000436346 CALCOCO2Q13137 446 aa13.44□□□□□ -0.26
CCDC88A-207ENST00000436346 SUPT20HQ8NEM7 779 aa13.44□□□□□ -0.26
CCDC88A-207ENST00000436346 LZTS2Q9BRK4 669 aa13.44□□□□□ -0.26
CCDC88A-207ENST00000436346 HSPA1LP34931 641 aa13.44□□□□□ -0.26
CCDC88A-207ENST00000436346 MFSD14BQ5SR56 506 aa13.44□□□□□ -0.26
CCDC88A-207ENST00000436346 CLSTN2Q9H4D0 955 aa13.44□□□□□ -0.26
CCDC88A-207ENST00000436346 FAM204AQ9H8W3 233 aa13.44□□□□□ -0.26
CCDC88A-207ENST00000436346 ALDH1B1P30837 517 aa13.44□□□□□ -0.26
CCDC88A-207ENST00000436346 CCDC121Q6ZUS5 278 aa13.44□□□□□ -0.26
CCDC88A-207ENST00000436346 MYCT1Q8N699 235 aa13.44□□□□□ -0.26
CCDC88A-207ENST00000436346 PHACTR3Q96KR7 559 aa13.44□□□□□ -0.26
CCDC88A-207ENST00000436346 NOX5Q96PH1 765 aa13.44□□□□□ -0.26
CCDC88A-207ENST00000436346 ZNF569Q5MCW4 686 aa13.44□□□□□ -0.26
CCDC88A-207ENST00000436346 TNNC1P63316 161 aa13.44□□□□□ -0.26
CCDC88A-207ENST00000436346 CTDSPL2Q05D32 466 aa13.44□□□□□ -0.26
CCDC88A-207ENST00000436346 IPO4Q8TEX9 1081 aaKnown RBP13.44□□□□□ -0.26
CCDC88A-207ENST00000436346 A0A1B0GVL5 298 aa13.43□□□□□ -0.26
CCDC88A-207ENST00000436346 CASC4Q6P4E1 433 aa13.43□□□□□ -0.26
CCDC88A-207ENST00000436346 SLC52A2Q9HAB3 445 aa13.43□□□□□ -0.26
CCDC88A-207ENST00000436346 DYNC1I1O14576 645 aa13.43□□□□□ -0.26
CCDC88A-207ENST00000436346 TNNI3KQ59H18 835 aa13.43□□□□□ -0.26
CCDC88A-207ENST00000436346 CEP128Q6ZU80 1094 aa13.43□□□□□ -0.26
CCDC88A-207ENST00000436346 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.43□□□□□ -0.26
CCDC88A-207ENST00000436346 FPGT-TNNI3KV9GXZ4 949 aa13.43□□□□□ -0.26
CCDC88A-207ENST00000436346 ZBTB24O43167 697 aaPredicted RBP13.43□□□□□ -0.26
CCDC88A-207ENST00000436346 PDE8AO60658 829 aa13.43□□□□□ -0.26
CCDC88A-207ENST00000436346 KRT24Q2M2I5 525 aa13.43□□□□□ -0.26
CCDC88A-207ENST00000436346 GADL1Q6ZQY3 521 aa13.43□□□□□ -0.26
CCDC88A-207ENST00000436346 IRX5P78411 483 aaPredicted RBP13.43□□□□□ -0.26
CCDC88A-207ENST00000436346 KCNA6P17658 529 aa13.43□□□□□ -0.26
CCDC88A-207ENST00000436346 ERCC5P28715 1186 aaPredicted RBP13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms