RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 PCDHA5Q9Y5H7 936 aa12.97□□□□□ -0.33
USP4-205ENST00000431357 DEXIO95424 95 aa12.97□□□□□ -0.33
USP4-205ENST00000431357 MDM2Q00987 491 aaPredicted RBP12.97□□□□□ -0.33
USP4-205ENST00000431357 PPP2R5BQ15173 497 aa12.97□□□□□ -0.33
USP4-205ENST00000431357 RTN1Q16799 776 aa12.97□□□□□ -0.33
USP4-205ENST00000431357 SYT10Q6XYQ8 523 aa12.97□□□□□ -0.33
USP4-205ENST00000431357 MLKLQ8NB16 471 aa12.97□□□□□ -0.33
USP4-205ENST00000431357 ECM29Q5VYK3 1845 aa12.97□□□□□ -0.33
USP4-205ENST00000431357 BCL9O00512 1426 aa12.96□□□□□ -0.33
USP4-205ENST00000431357 GOLGA6L9A6NEM1 432 aa12.96□□□□□ -0.33
USP4-205ENST00000431357 GSG1L2A8MUP6 293 aa12.96□□□□□ -0.33
USP4-205ENST00000431357 CTDSPL2Q05D32 466 aa12.96□□□□□ -0.33
USP4-205ENST00000431357 WTAPQ15007 396 aa12.96□□□□□ -0.33
USP4-205ENST00000431357 KMT5BQ4FZB7 885 aa12.96□□□□□ -0.33
USP4-205ENST00000431357 NT5DC1Q5TFE4 455 aa12.96□□□□□ -0.33
USP4-205ENST00000431357 DZIP3Q86Y13 1208 aaKnown RBP12.96□□□□□ -0.33
USP4-205ENST00000431357 HOMER1Q86YM7 354 aa12.96□□□□□ -0.33
USP4-205ENST00000431357 DIS3L2Q8IYB7 885 aaKnown RBP12.96□□□□□ -0.33
USP4-205ENST00000431357 CCDC34Q96HJ3 373 aa12.96□□□□□ -0.33
USP4-205ENST00000431357 ZBTB1Q9Y2K1 713 aa12.96□□□□□ -0.33
USP4-205ENST00000431357 DOCK2Q92608 1830 aa12.96□□□□□ -0.34
USP4-205ENST00000431357 ARHGAP6O43182 974 aa12.95□□□□□ -0.34
USP4-205ENST00000431357 ELF2Q15723 593 aa12.95□□□□□ -0.34
USP4-205ENST00000431357 CT47A1Q5JQC4 288 aaPredicted RBP12.95□□□□□ -0.34
USP4-205ENST00000431357 FOXP4Q8IVH2 680 aaPredicted RBP12.95□□□□□ -0.34
USP4-205ENST00000431357 KRT222Q8N1A0 295 aa12.95□□□□□ -0.34
USP4-205ENST00000431357 STK11IPQ8N1F8 1099 aa12.95□□□□□ -0.34
USP4-205ENST00000431357 ENOX1Q8TC92 643 aaKnown RBP12.95□□□□□ -0.34
USP4-205ENST00000431357 DPF2Q92785 391 aa12.95□□□□□ -0.34
USP4-205ENST00000431357 MYL10Q9BUA6 226 aa12.95□□□□□ -0.34
USP4-205ENST00000431357 ARMT1Q9H993 441 aa12.95□□□□□ -0.34
USP4-205ENST00000431357 FANCLQ9NW38 375 aa12.95□□□□□ -0.34
USP4-205ENST00000431357 FBXO2Q9UK22 296 aaPredicted RBP12.95□□□□□ -0.34
USP4-205ENST00000431357 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.95□□□□□ -0.34
USP4-205ENST00000431357 ITGB4P16144 1822 aa12.95□□□□□ -0.34
USP4-205ENST00000431357 BTBD18B2RXH4 712 aa12.95□□□□□ -0.34
USP4-205ENST00000431357 TDO2P48775 406 aa12.95□□□□□ -0.34
USP4-205ENST00000431357 RASGRF1Q13972 1273 aa12.95□□□□□ -0.34
USP4-205ENST00000431357 POSTNQ15063 836 aa12.95□□□□□ -0.34
USP4-205ENST00000431357 CRACR2BQ8N4Y2 399 aaPredicted RBP12.95□□□□□ -0.34
USP4-205ENST00000431357 MPHOSPH8Q99549 860 aa12.95□□□□□ -0.34
USP4-205ENST00000431357 FAM53CQ9NYF3 392 aa12.95□□□□□ -0.34
USP4-205ENST00000431357 NUP98P52948 1817 aa12.94□□□□□ -0.34
USP4-205ENST00000431357 SARSP49591 514 aaKnown RBP12.94□□□□□ -0.34
USP4-205ENST00000431357 TOB1P50616 345 aaPredicted RBP12.94□□□□□ -0.34
USP4-205ENST00000431357 SLC20A2Q08357 652 aa12.94□□□□□ -0.34
USP4-205ENST00000431357 FBXO38Q6PIJ6 1188 aa12.94□□□□□ -0.34
USP4-205ENST00000431357 SMARCE1Q969G3 411 aa12.94□□□□□ -0.34
USP4-205ENST00000431357 SLC4A9Q96Q91 983 aa12.94□□□□□ -0.34
USP4-205ENST00000431357 MAN1B1Q9UKM7 699 aa12.94□□□□□ -0.34
USP4-205ENST00000431357 SRPRBQ9Y5M8 271 aaKnown RBP12.94□□□□□ -0.34
USP4-205ENST00000431357 SLC4A4Q9Y6R1 1079 aa12.94□□□□□ -0.34
USP4-205ENST00000431357 MYO5AQ9Y4I1 1855 aaKnown RBP12.94□□□□□ -0.34
USP4-205ENST00000431357 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.94□□□□□ -0.34
USP4-205ENST00000431357 TBX2Q13207 712 aaPredicted RBP12.94□□□□□ -0.34
USP4-205ENST00000431357 HELBQ8NG08 1087 aaPredicted RBP12.94□□□□□ -0.34
USP4-205ENST00000431357 INCENPQ9NQS7 918 aa12.94□□□□□ -0.34
USP4-205ENST00000431357 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.94□□□□□ -0.34
USP4-205ENST00000431357 V9GYY5 206 aaPredicted RBP12.94□□□□□ -0.34
USP4-205ENST00000431357 DISP2A7MBM2 1401 aa12.93□□□□□ -0.34
USP4-205ENST00000431357 CHD4Q14839 1912 aa12.93□□□□□ -0.34
USP4-205ENST00000431357 TPM1P09493 284 aa12.93□□□□□ -0.34
USP4-205ENST00000431357 H2AFXP16104 143 aaPredicted RBP12.93□□□□□ -0.34
USP4-205ENST00000431357 XBP1P17861 261 aa12.93□□□□□ -0.34
USP4-205ENST00000431357 FAM193AP78312 1265 aa12.93□□□□□ -0.34
USP4-205ENST00000431357 MORC3Q14149 939 aa12.93□□□□□ -0.34
USP4-205ENST00000431357 REXO1L1PQ8IX06 675 aa12.93□□□□□ -0.34
USP4-205ENST00000431357 UTP14AQ9BVJ6 771 aaKnown RBP12.93□□□□□ -0.34
USP4-205ENST00000431357 TACC3Q9Y6A5 838 aa12.93□□□□□ -0.34
USP4-205ENST00000431357 RTL9Q8NET4 1388 aa12.93□□□□□ -0.34
USP4-205ENST00000431357 POLR2DO15514 142 aaKnown RBP12.92□□□□□ -0.34
USP4-205ENST00000431357 STX10O60499 249 aa12.92□□□□□ -0.34
USP4-205ENST00000431357 ZNF18P17022 549 aa12.92□□□□□ -0.34
USP4-205ENST00000431357 CDK11BP21127 795 aaKnown RBP12.92□□□□□ -0.34
USP4-205ENST00000431357 BMP6P22004 513 aa12.92□□□□□ -0.34
USP4-205ENST00000431357 ERCC5P28715 1186 aaPredicted RBP12.92□□□□□ -0.34
USP4-205ENST00000431357 GUCY1A2P33402 732 aa12.92□□□□□ -0.34
USP4-205ENST00000431357 BMS1Q14692 1282 aaKnown RBP12.92□□□□□ -0.34
USP4-205ENST00000431357 PARP10Q53GL7 1025 aa12.92□□□□□ -0.34
USP4-205ENST00000431357 RRP12Q5JTH9 1297 aaKnown RBP12.92□□□□□ -0.34
USP4-205ENST00000431357 TRIM65Q6PJ69 517 aa12.92□□□□□ -0.34
USP4-205ENST00000431357 LCORLQ8N3X6 602 aa12.92□□□□□ -0.34
USP4-205ENST00000431357 FANCBQ8NB91 859 aa12.92□□□□□ -0.34
USP4-205ENST00000431357 RNF26Q9BY78 433 aaPredicted RBP12.92□□□□□ -0.34
USP4-205ENST00000431357 TOMM22Q9NS69 142 aa12.92□□□□□ -0.34
USP4-205ENST00000431357 SERTAD1Q9UHV2 236 aa12.92□□□□□ -0.34
USP4-205ENST00000431357 DNAI1Q9UI46 699 aa12.92□□□□□ -0.34
USP4-205ENST00000431357 BMP15O95972 392 aa12.92□□□□□ -0.34
USP4-205ENST00000431357 IGHMBP2P38935 993 aaKnown RBP12.92□□□□□ -0.34
USP4-205ENST00000431357 PDE4BQ07343 736 aa12.92□□□□□ -0.34
USP4-205ENST00000431357 CCDC152Q4G0S7 254 aa12.92□□□□□ -0.34
USP4-205ENST00000431357 SPECC1LQ69YQ0 1117 aa12.92□□□□□ -0.34
USP4-205ENST00000431357 NUTM2AQ8IVF1 878 aaPredicted RBP12.92□□□□□ -0.34
USP4-205ENST00000431357 ZNF654Q8IZM8 581 aa12.92□□□□□ -0.34
USP4-205ENST00000431357 UBAC1Q9BSL1 405 aa12.92□□□□□ -0.34
USP4-205ENST00000431357 ARGLU1Q9NWB6 273 aaPredicted RBP12.92□□□□□ -0.34
USP4-205ENST00000431357 ANAPC4Q9UJX5 808 aa12.92□□□□□ -0.34
USP4-205ENST00000431357 KCNJ14Q9UNX9 436 aa12.92□□□□□ -0.34
USP4-205ENST00000431357 TMEM232C9JQI7 657 aa12.91□□□□□ -0.34
USP4-205ENST00000431357 PRKAB2O43741 272 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms