RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 DHX36Q9H2U1 1008 aaKnown RBP14.93□□□□□ -0.02
USP40-205ENST00000430158 DNAJC18Q9H819 358 aa14.93□□□□□ -0.02
USP40-205ENST00000430158 ZNF408Q9H9D4 720 aa14.93□□□□□ -0.02
USP40-205ENST00000430158 ATP8A2Q9NTI2 1148 aa14.93□□□□□ -0.02
USP40-205ENST00000430158 PALD1Q9ULE6 856 aa14.93□□□□□ -0.02
USP40-205ENST00000430158 UBE2Q2LH0YL09 131 aa14.92□□□□□ -0.02
USP40-205ENST00000430158 SMIM22K7EJ46 135 aa14.92□□□□□ -0.02
USP40-205ENST00000430158 USP5P45974 858 aa14.92□□□□□ -0.02
USP40-205ENST00000430158 VPS53Q5VIR6 699 aa14.92□□□□□ -0.02
USP40-205ENST00000430158 GIMAP6Q6P9H5 292 aa14.92□□□□□ -0.02
USP40-205ENST00000430158 KLRG1Q96E93 195 aa14.92□□□□□ -0.02
USP40-205ENST00000430158 CSRNP1Q96S65 589 aa14.92□□□□□ -0.02
USP40-205ENST00000430158 SAP30BPQ9UHR5 308 aaKnown RBP14.92□□□□□ -0.02
USP40-205ENST00000430158 SLC4A4Q9Y6R1 1079 aa14.92□□□□□ -0.02
USP40-205ENST00000430158 RASSF10A6NK89 507 aa14.91□□□□□ -0.02
USP40-205ENST00000430158 PATL2C9JE40 543 aaKnown RBP14.91□□□□□ -0.02
USP40-205ENST00000430158 HIP1O00291 1037 aa14.91□□□□□ -0.02
USP40-205ENST00000430158 CYP2D6P10635 497 aa14.91□□□□□ -0.02
USP40-205ENST00000430158 GNAT2P19087 354 aa14.91□□□□□ -0.02
USP40-205ENST00000430158 NF2P35240 595 aa14.91□□□□□ -0.02
USP40-205ENST00000430158 PLCD1P51178 756 aa14.91□□□□□ -0.02
USP40-205ENST00000430158 GABPAQ06546 454 aa14.91□□□□□ -0.02
USP40-205ENST00000430158 RRP1BQ14684 758 aaKnown RBP14.91□□□□□ -0.02
USP40-205ENST00000430158 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.91□□□□□ -0.02
USP40-205ENST00000430158 MIGA2Q7L4E1 593 aa14.91□□□□□ -0.02
USP40-205ENST00000430158 DNAJC5GQ8N7S2 189 aa14.91□□□□□ -0.02
USP40-205ENST00000430158 C2orf69Q8N8R5 385 aa14.91□□□□□ -0.02
USP40-205ENST00000430158 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.91□□□□□ -0.02
USP40-205ENST00000430158 HHIPL1Q96JK4 782 aa14.91□□□□□ -0.02
USP40-205ENST00000430158 PI4KBQ9UBF8 816 aa14.91□□□□□ -0.02
USP40-205ENST00000430158 PPP1R12BO60237 982 aaPredicted RBP14.9□□□□□ -0.02
USP40-205ENST00000430158 PRKG1Q13976 671 aa14.9□□□□□ -0.02
USP40-205ENST00000430158 ALX1Q15699 326 aa14.9□□□□□ -0.02
USP40-205ENST00000430158 SBK1Q52WX2 424 aa14.9□□□□□ -0.02
USP40-205ENST00000430158 C12orf60Q5U649 245 aa14.9□□□□□ -0.02
USP40-205ENST00000430158 CTR9Q6PD62 1173 aa14.9□□□□□ -0.02
USP40-205ENST00000430158 CWC27Q6UX04 472 aaKnown RBP14.9□□□□□ -0.02
USP40-205ENST00000430158 FOXP4Q8IVH2 680 aaPredicted RBP14.9□□□□□ -0.02
USP40-205ENST00000430158 HOOK2Q96ED9 719 aa14.9□□□□□ -0.02
USP40-205ENST00000430158 EHD4Q9H223 541 aa14.9□□□□□ -0.02
USP40-205ENST00000430158 DIAPH3Q9NSV4 1193 aa14.9□□□□□ -0.02
USP40-205ENST00000430158 MCM9Q9NXL9 1143 aa14.9□□□□□ -0.02
USP40-205ENST00000430158 ANGEL1Q9UNK9 670 aaKnown RBP14.9□□□□□ -0.02
USP40-205ENST00000430158 CCDC171Q6TFL3 1326 aa14.9□□□□□ -0.02
USP40-205ENST00000430158 CYP2D7A0A087X1C5 515 aa14.89□□□□□ -0.03
USP40-205ENST00000430158 UNCXA6NJT0 531 aa14.89□□□□□ -0.03
USP40-205ENST00000430158 FAM196BA6NMK8 535 aa14.89□□□□□ -0.03
USP40-205ENST00000430158 USP17L12C9JPN9 530 aa14.89□□□□□ -0.03
USP40-205ENST00000430158 USP17L21D6R901 530 aa14.89□□□□□ -0.03
USP40-205ENST00000430158 HUNKP57058 714 aa14.89□□□□□ -0.03
USP40-205ENST00000430158 DCAF15Q66K64 600 aa14.89□□□□□ -0.03
USP40-205ENST00000430158 ARMC9Q7Z3E5 817 aa14.89□□□□□ -0.03
USP40-205ENST00000430158 ZSCAN29Q8IWY8 852 aaPredicted RBP14.89□□□□□ -0.03
USP40-205ENST00000430158 IFNL3Q8IZI9 196 aa14.89□□□□□ -0.03
USP40-205ENST00000430158 CLMNQ96JQ2 1002 aa14.89□□□□□ -0.03
USP40-205ENST00000430158 PHF12Q96QT6 1004 aa14.89□□□□□ -0.03
USP40-205ENST00000430158 ZNF341Q9BYN7 854 aa14.89□□□□□ -0.03
USP40-205ENST00000430158 HERC5Q9UII4 1024 aaKnown RBP14.89□□□□□ -0.03
USP40-205ENST00000430158 GTF3C3Q9Y5Q9 886 aa14.89□□□□□ -0.03
USP40-205ENST00000430158 PHIPQ8WWQ0 1821 aa14.88□□□□□ -0.03
USP40-205ENST00000430158 FAM155AB1AL88 458 aaPredicted RBP14.88□□□□□ -0.03
USP40-205ENST00000430158 SGSM2O43147 1006 aa14.88□□□□□ -0.03
USP40-205ENST00000430158 HSPD1P10809 573 aaKnown RBP14.88□□□□□ -0.03
USP40-205ENST00000430158 INPP5BP32019 993 aa14.88□□□□□ -0.03
USP40-205ENST00000430158 JAG1P78504 1218 aa14.88□□□□□ -0.03
USP40-205ENST00000430158 MAP3K9P80192 1104 aa14.88□□□□□ -0.03
USP40-205ENST00000430158 TTC6Q86TZ1 520 aa14.88□□□□□ -0.03
USP40-205ENST00000430158 PLSCR2Q9NRY7 297 aa14.88□□□□□ -0.03
USP40-205ENST00000430158 RAD50Q92878 1312 aa14.88□□□□□ -0.03
USP40-205ENST00000430158 LAMB1P07942 1786 aa14.88□□□□□ -0.03
USP40-205ENST00000430158 IREB2P48200 963 aaKnown RBP14.87□□□□□ -0.03
USP40-205ENST00000430158 SLC4A8Q2Y0W8 1093 aa14.87□□□□□ -0.03
USP40-205ENST00000430158 NOL9Q5SY16 702 aaKnown RBP14.87□□□□□ -0.03
USP40-205ENST00000430158 TATDN1Q6P1N9 297 aa14.87□□□□□ -0.03
USP40-205ENST00000430158 SERPINB13Q9UIV8 391 aa14.87□□□□□ -0.03
USP40-205ENST00000430158 TAOK2Q9UL54 1235 aa14.87□□□□□ -0.03
USP40-205ENST00000430158 ABT1Q9ULW3 272 aaKnown RBP14.87□□□□□ -0.03
USP40-205ENST00000430158 TACC3Q9Y6A5 838 aa14.87□□□□□ -0.03
USP40-205ENST00000430158 SNCAIPQ9Y6H5 919 aa14.87□□□□□ -0.03
USP40-205ENST00000430158 ZMYM6O95789 1325 aa14.87□□□□□ -0.03
USP40-205ENST00000430158 ATAD5Q96QE3 1844 aa14.87□□□□□ -0.03
USP40-205ENST00000430158 DOCK1Q14185 1865 aa14.86□□□□□ -0.03
USP40-205ENST00000430158 ROBO3Q96MS0 1386 aa14.86□□□□□ -0.03
USP40-205ENST00000430158 FGAP02671 866 aa14.86□□□□□ -0.03
USP40-205ENST00000430158 SHMT1P34896 483 aa14.86□□□□□ -0.03
USP40-205ENST00000430158 MNX1P50219 401 aaPredicted RBP14.86□□□□□ -0.03
USP40-205ENST00000430158 VGLL4Q14135 290 aa14.86□□□□□ -0.03
USP40-205ENST00000430158 TTLL12Q14166 644 aaPredicted RBP14.86□□□□□ -0.03
USP40-205ENST00000430158 DEFB115Q30KQ5 88 aa14.86□□□□□ -0.03
USP40-205ENST00000430158 RGMBQ6NW40 437 aa14.86□□□□□ -0.03
USP40-205ENST00000430158 ANKRD13AQ8IZ07 590 aa14.86□□□□□ -0.03
USP40-205ENST00000430158 ZKSCAN4Q969J2 545 aaPredicted RBP14.86□□□□□ -0.03
USP40-205ENST00000430158 DYNLL2Q96FJ2 89 aa14.86□□□□□ -0.03
USP40-205ENST00000430158 WRNIP1Q96S55 665 aa14.86□□□□□ -0.03
USP40-205ENST00000430158 ESYT1Q9BSJ8 1104 aa14.86□□□□□ -0.03
USP40-205ENST00000430158 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.86□□□□□ -0.03
USP40-205ENST00000430158 ARPP21Q9UBL0 812 aaPredicted RBP14.86□□□□□ -0.03
USP40-205ENST00000430158 MYH8P13535 1937 aa14.86□□□□□ -0.03
USP40-205ENST00000430158 SPDYE4A6NLX3 237 aa14.85□□□□□ -0.03
USP40-205ENST00000430158 POLR3DP05423 398 aaPredicted RBP14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms