RNA–Protein interactions for RNA: ENST00000425537.1

HMGB4-201, Transcript of high mobility group box 4, humanhuman

TSL 1 (best)

Gene HMGB4, Length 630 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4-201ENST00000425537 USP17L12C9JPN9 530 aa11.03□□□□□ -0.64
HMGB4-201ENST00000425537 USP17L21D6R901 530 aa11.03□□□□□ -0.64
HMGB4-201ENST00000425537 JAK2O60674 1132 aa11.03□□□□□ -0.64
HMGB4-201ENST00000425537 FGRP09769 529 aa11.03□□□□□ -0.64
HMGB4-201ENST00000425537 COL9A3Q14050 684 aaPredicted RBP11.03□□□□□ -0.64
HMGB4-201ENST00000425537 MFSD14BQ5SR56 506 aa11.03□□□□□ -0.64
HMGB4-201ENST00000425537 CTR9Q6PD62 1173 aa11.03□□□□□ -0.64
HMGB4-201ENST00000425537 PODNQ7Z5L7 613 aa11.03□□□□□ -0.64
HMGB4-201ENST00000425537 USP48Q86UV5 1035 aa11.03□□□□□ -0.64
HMGB4-201ENST00000425537 TRIM22Q8IYM9 498 aa11.03□□□□□ -0.64
HMGB4-201ENST00000425537 DDX11Q96FC9 970 aa11.03□□□□□ -0.64
HMGB4-201ENST00000425537 GPR101Q96P66 508 aaPredicted RBP11.03□□□□□ -0.64
HMGB4-201ENST00000425537 GZF1Q9H116 711 aaPredicted RBP11.03□□□□□ -0.64
HMGB4-201ENST00000425537 LY9Q9HBG7 655 aa11.03□□□□□ -0.64
HMGB4-201ENST00000425537 DCP1AQ9NPI6 582 aaPredicted RBP11.03□□□□□ -0.64
HMGB4-201ENST00000425537 ORC3Q9UBD5 711 aaPredicted RBP11.03□□□□□ -0.64
HMGB4-201ENST00000425537 BRPF3Q9ULD4 1205 aa11.03□□□□□ -0.64
HMGB4-201ENST00000425537 ELP1O95163 1332 aa11.03□□□□□ -0.64
HMGB4-201ENST00000425537 STK36Q9NRP7 1315 aa11.03□□□□□ -0.64
HMGB4-201ENST00000425537 GPR75-ASB3A0A0A6YYF3 556 aa11.02□□□□□ -0.65
HMGB4-201ENST00000425537 IARSP41252 1262 aaKnown RBP11.02□□□□□ -0.65
HMGB4-201ENST00000425537 FKBP1AP62942 108 aaKnown RBP11.02□□□□□ -0.65
HMGB4-201ENST00000425537 SSRP1Q08945 709 aaKnown RBP11.02□□□□□ -0.65
HMGB4-201ENST00000425537 CDC37L1Q7L3B6 337 aa11.02□□□□□ -0.65
HMGB4-201ENST00000425537 BRAPQ7Z569 592 aa11.02□□□□□ -0.65
HMGB4-201ENST00000425537 CATIPQ7Z7H3 387 aa11.02□□□□□ -0.65
HMGB4-201ENST00000425537 ZNF384Q8TF68 577 aa11.02□□□□□ -0.65
HMGB4-201ENST00000425537 C8orf76Q96K31 380 aa11.02□□□□□ -0.65
HMGB4-201ENST00000425537 NCOA5Q9HCD5 579 aaKnown RBP11.02□□□□□ -0.65
HMGB4-201ENST00000425537 RBM28Q9NW13 759 aaKnown RBP11.02□□□□□ -0.65
HMGB4-201ENST00000425537 MCM9Q9NXL9 1143 aa11.02□□□□□ -0.65
HMGB4-201ENST00000425537 TAOK2Q9UL54 1235 aa11.02□□□□□ -0.65
HMGB4-201ENST00000425537 HPS5Q9UPZ3 1129 aa11.02□□□□□ -0.65
HMGB4-201ENST00000425537 MYH2Q9UKX2 1941 aa11.01□□□□□ -0.65
HMGB4-201ENST00000425537 RANBP6O60518 1105 aaKnown RBP11.01□□□□□ -0.65
HMGB4-201ENST00000425537 CTDNEP1O95476 244 aa11.01□□□□□ -0.65
HMGB4-201ENST00000425537 MRE11P49959 708 aa11.01□□□□□ -0.65
HMGB4-201ENST00000425537 PRELPP51888 382 aa11.01□□□□□ -0.65
HMGB4-201ENST00000425537 RTN1Q16799 776 aa11.01□□□□□ -0.65
HMGB4-201ENST00000425537 CAVIN1Q6NZI2 390 aaKnown RBP11.01□□□□□ -0.65
HMGB4-201ENST00000425537 TEX11Q8IYF3 940 aa11.01□□□□□ -0.65
HMGB4-201ENST00000425537 SPATA32Q96LK8 384 aa11.01□□□□□ -0.65
HMGB4-201ENST00000425537 ZSCAN10Q96SZ4 725 aaPredicted RBP11.01□□□□□ -0.65
HMGB4-201ENST00000425537 CNPY2Q9Y2B0 182 aa11.01□□□□□ -0.65
HMGB4-201ENST00000425537 GAKO14976 1311 aa11.01□□□□□ -0.65
HMGB4-201ENST00000425537 ROBO3Q96MS0 1386 aa11.01□□□□□ -0.65
HMGB4-201ENST00000425537 NAV1Q8NEY1 1877 aa11□□□□□ -0.65
HMGB4-201ENST00000425537 BAZ2AQ9UIF9 1905 aaKnown RBP11□□□□□ -0.65
HMGB4-201ENST00000425537 NFKBIEO00221 500 aa11□□□□□ -0.65
HMGB4-201ENST00000425537 RIMBP2O15034 1052 aa11□□□□□ -0.65
HMGB4-201ENST00000425537 FIBPO43427 364 aa11□□□□□ -0.65
HMGB4-201ENST00000425537 DDAH1O94760 285 aa11□□□□□ -0.65
HMGB4-201ENST00000425537 POLR3DP05423 398 aaPredicted RBP11□□□□□ -0.65
HMGB4-201ENST00000425537 IFNAR1P17181 557 aa11□□□□□ -0.65
HMGB4-201ENST00000425537 XBP1P17861 261 aa11□□□□□ -0.65
HMGB4-201ENST00000425537 BTDP43251 543 aa11□□□□□ -0.65
HMGB4-201ENST00000425537 ZNF445P59923 1031 aa11□□□□□ -0.65
HMGB4-201ENST00000425537 GTF2IP78347 998 aa11□□□□□ -0.65
HMGB4-201ENST00000425537 AKAP17AQ02040 695 aaKnown RBP11□□□□□ -0.65
HMGB4-201ENST00000425537 DNM1Q05193 864 aaKnown RBP11□□□□□ -0.65
HMGB4-201ENST00000425537 RESTQ13127 1097 aa11□□□□□ -0.65
HMGB4-201ENST00000425537 IFIT1BQ5T764 474 aaKnown RBP11□□□□□ -0.65
HMGB4-201ENST00000425537 SOGA3Q5TF21 947 aa11□□□□□ -0.65
HMGB4-201ENST00000425537 C12orf60Q5U649 245 aa11□□□□□ -0.65
HMGB4-201ENST00000425537 MICU3Q86XE3 530 aa11□□□□□ -0.65
HMGB4-201ENST00000425537 MRIQ9BWK5 157 aa11□□□□□ -0.65
HMGB4-201ENST00000425537 RTFDC1Q9BY42 306 aaPredicted RBP11□□□□□ -0.65
HMGB4-201ENST00000425537 MKNK2Q9HBH9 465 aa11□□□□□ -0.65
HMGB4-201ENST00000425537 GPHNQ9NQX3 736 aaPredicted RBP11□□□□□ -0.65
HMGB4-201ENST00000425537 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11□□□□□ -0.65
HMGB4-201ENST00000425537 TNKSO95271 1327 aa11□□□□□ -0.65
HMGB4-201ENST00000425537 TSPY2A6NKD2 308 aa10.99□□□□□ -0.65
HMGB4-201ENST00000425537 KIF5BP33176 963 aa10.99□□□□□ -0.65
HMGB4-201ENST00000425537 HDLBPQ00341 1268 aaKnown RBP10.99□□□□□ -0.65
HMGB4-201ENST00000425537 GNL2Q13823 731 aaKnown RBP10.99□□□□□ -0.65
HMGB4-201ENST00000425537 SAFBQ15424 915 aaKnown RBP eCLIP10.99□□□□□ -0.65
HMGB4-201ENST00000425537 FOXD4L6Q3SYB3 417 aaPredicted RBP10.99□□□□□ -0.65
HMGB4-201ENST00000425537 PPP4R3BQ5MIZ7 849 aa10.99□□□□□ -0.65
HMGB4-201ENST00000425537 HHIPL2Q6UWX4 724 aa10.99□□□□□ -0.65
HMGB4-201ENST00000425537 FOXD4L3Q6VB84 417 aaPredicted RBP10.99□□□□□ -0.65
HMGB4-201ENST00000425537 TTC6Q86TZ1 520 aa10.99□□□□□ -0.65
HMGB4-201ENST00000425537 FERMT3Q86UX7 667 aa10.99□□□□□ -0.65
HMGB4-201ENST00000425537 RTKN2Q8IZC4 609 aa10.99□□□□□ -0.65
HMGB4-201ENST00000425537 ZNF654Q8IZM8 581 aa10.99□□□□□ -0.65
HMGB4-201ENST00000425537 ZNF444Q8N0Y2 327 aaPredicted RBP10.99□□□□□ -0.65
HMGB4-201ENST00000425537 FANCBQ8NB91 859 aa10.99□□□□□ -0.65
HMGB4-201ENST00000425537 FBXO18Q8NFZ0 1043 aa10.99□□□□□ -0.65
HMGB4-201ENST00000425537 SH3RF3Q8TEJ3 882 aaPredicted RBP10.99□□□□□ -0.65
HMGB4-201ENST00000425537 ANP32BQ92688 251 aaKnown RBP10.99□□□□□ -0.65
HMGB4-201ENST00000425537 FBXW7Q969H0 707 aa10.99□□□□□ -0.65
HMGB4-201ENST00000425537 VPS33BQ9H267 617 aa10.99□□□□□ -0.65
HMGB4-201ENST00000425537 ZNF277Q9NRM2 450 aaPredicted RBP10.99□□□□□ -0.65
HMGB4-201ENST00000425537 RBM27Q9P2N5 1060 aaKnown RBP10.99□□□□□ -0.65
HMGB4-201ENST00000425537 JAG2Q9Y219 1238 aa10.99□□□□□ -0.65
HMGB4-201ENST00000425537 FER1L6Q2WGJ9 1857 aa10.99□□□□□ -0.65
HMGB4-201ENST00000425537 FSD2A1L4K1 749 aa10.98□□□□□ -0.65
HMGB4-201ENST00000425537 DEXIO95424 95 aa10.98□□□□□ -0.65
HMGB4-201ENST00000425537 FMNL1O95466 1100 aaPredicted RBP10.98□□□□□ -0.65
HMGB4-201ENST00000425537 GNAQP50148 359 aa10.98□□□□□ -0.65
HMGB4-201ENST00000425537 SEC23AQ15436 765 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms