RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 FLAD1Q8NFF5 587 aa7.62□□□□□ -1.19
SCN1A-204ENST00000423058 ADPGKQ9BRR6 497 aa7.62□□□□□ -1.19
SCN1A-204ENST00000423058 CCDC68Q9H2F9 335 aa7.62□□□□□ -1.19
SCN1A-204ENST00000423058 GPCPD1Q9NPB8 672 aa7.62□□□□□ -1.19
SCN1A-204ENST00000423058 BAG5Q9UL15 447 aa7.62□□□□□ -1.19
SCN1A-204ENST00000423058 GIGYF1O75420 1035 aaPredicted RBP7.61□□□□□ -1.19
SCN1A-204ENST00000423058 KRT19P08727 400 aa7.61□□□□□ -1.19
SCN1A-204ENST00000423058 PDE6AP16499 860 aa7.61□□□□□ -1.19
SCN1A-204ENST00000423058 IRAK4Q9NWZ3 460 aa7.61□□□□□ -1.19
SCN1A-204ENST00000423058 ANAPC5Q9UJX4 755 aa7.61□□□□□ -1.19
SCN1A-204ENST00000423058 SLC8A2Q9UPR5 921 aa7.61□□□□□ -1.19
SCN1A-204ENST00000423058 CDK13Q14004 1512 aaKnown RBP7.61□□□□□ -1.19
SCN1A-204ENST00000423058 KIAA0586Q9BVV6 1533 aa7.61□□□□□ -1.19
SCN1A-204ENST00000423058 PLB1Q6P1J6 1458 aa7.61□□□□□ -1.19
SCN1A-204ENST00000423058 PPP2R5DQ14738 602 aa7.61□□□□□ -1.19
SCN1A-204ENST00000423058 TBC1D9Q6ZT07 1266 aa7.61□□□□□ -1.19
SCN1A-204ENST00000423058 METTL13Q8N6R0 699 aa7.61□□□□□ -1.19
SCN1A-204ENST00000423058 TBC1D22AQ8WUA7 517 aa7.61□□□□□ -1.19
SCN1A-204ENST00000423058 DCPSQ96C86 337 aaKnown RBP7.61□□□□□ -1.19
SCN1A-204ENST00000423058 UHRF1BP1LA0JNW5 1464 aa7.61□□□□□ -1.19
SCN1A-204ENST00000423058 KRT81Q14533 505 aa7.61□□□□□ -1.19
SCN1A-204ENST00000423058 PUM3Q15397 648 aaKnown RBP7.61□□□□□ -1.19
SCN1A-204ENST00000423058 TRIM50Q86XT4 487 aa7.61□□□□□ -1.19
SCN1A-204ENST00000423058 PARP2Q9UGN5 583 aa7.61□□□□□ -1.19
SCN1A-204ENST00000423058 ARHGEF37A1IGU5 675 aa7.61□□□□□ -1.19
SCN1A-204ENST00000423058 PLEKHG3A1L390 1219 aa7.61□□□□□ -1.19
SCN1A-204ENST00000423058 PPFIA3O75145 1194 aa7.61□□□□□ -1.19
SCN1A-204ENST00000423058 S100BP04271 92 aaPredicted RBP7.61□□□□□ -1.19
SCN1A-204ENST00000423058 LMNB1P20700 586 aa7.61□□□□□ -1.19
SCN1A-204ENST00000423058 NFKBIAP25963 317 aa7.61□□□□□ -1.19
SCN1A-204ENST00000423058 PPFIA1Q13136 1202 aa7.61□□□□□ -1.19
SCN1A-204ENST00000423058 PRPSAP1Q14558 356 aa7.61□□□□□ -1.19
SCN1A-204ENST00000423058 KRT222Q8N1A0 295 aa7.61□□□□□ -1.19
SCN1A-204ENST00000423058 DDX55Q8NHQ9 600 aaKnown RBP eCLIP7.61□□□□□ -1.19
SCN1A-204ENST00000423058 RHPN1Q8TCX5 695 aa7.61□□□□□ -1.19
SCN1A-204ENST00000423058 BRF1Q92994 677 aa7.61□□□□□ -1.19
SCN1A-204ENST00000423058 PCF11O94913 1555 aaKnown RBP7.61□□□□□ -1.19
SCN1A-204ENST00000423058 PPIP5K1Q6PFW1 1433 aa7.61□□□□□ -1.19
SCN1A-204ENST00000423058 CHMP2AO43633 222 aa7.61□□□□□ -1.19
SCN1A-204ENST00000423058 PTPREP23469 700 aa7.61□□□□□ -1.19
SCN1A-204ENST00000423058 CCDC170Q8IYT3 715 aa7.61□□□□□ -1.19
SCN1A-204ENST00000423058 PRPF38AQ8NAV1 312 aaKnown RBP7.61□□□□□ -1.19
SCN1A-204ENST00000423058 NOC4LQ9BVI4 516 aaKnown RBP7.61□□□□□ -1.19
SCN1A-204ENST00000423058 PKD2L1Q9P0L9 805 aa7.61□□□□□ -1.19
SCN1A-204ENST00000423058 CCNL1Q9UK58 526 aaPredicted RBP7.61□□□□□ -1.19
SCN1A-204ENST00000423058 ELP1O95163 1332 aa7.61□□□□□ -1.19
SCN1A-204ENST00000423058 ASXL1Q8IXJ9 1541 aa7.61□□□□□ -1.19
SCN1A-204ENST00000423058 HEXIM1O94992 359 aaKnown RBP7.61□□□□□ -1.19
SCN1A-204ENST00000423058 GNA14O95837 355 aa7.61□□□□□ -1.19
SCN1A-204ENST00000423058 PHBP35232 272 aa7.61□□□□□ -1.19
SCN1A-204ENST00000423058 BAG6P46379 1132 aa7.61□□□□□ -1.19
SCN1A-204ENST00000423058 CDR2Q01850 454 aa7.61□□□□□ -1.19
SCN1A-204ENST00000423058 ARHGEF16Q5VV41 709 aa7.61□□□□□ -1.19
SCN1A-204ENST00000423058 GCNAQ96QF7 691 aa7.61□□□□□ -1.19
SCN1A-204ENST00000423058 ANO3Q9BYT9 981 aa7.61□□□□□ -1.19
SCN1A-204ENST00000423058 LMCD1Q9NZU5 365 aa7.61□□□□□ -1.19
SCN1A-204ENST00000423058 GUCA1BQ9UMX6 200 aa7.61□□□□□ -1.19
SCN1A-204ENST00000423058 RBM8AQ9Y5S9 174 aaKnown RBP7.61□□□□□ -1.19
SCN1A-204ENST00000423058 LETM2Q2VYF4 491 aa7.6□□□□□ -1.19
SCN1A-204ENST00000423058 MRPL44Q9H9J2 332 aaKnown RBP7.6□□□□□ -1.19
SCN1A-204ENST00000423058 SAP30BPQ9UHR5 308 aaKnown RBP7.6□□□□□ -1.19
SCN1A-204ENST00000423058 MAP3K7O43318 606 aa7.6□□□□□ -1.19
SCN1A-204ENST00000423058 ABL1P00519 1130 aa7.6□□□□□ -1.19
SCN1A-204ENST00000423058 SLC1A4P43007 532 aa7.6□□□□□ -1.19
SCN1A-204ENST00000423058 DIXDC1Q155Q3 683 aa7.6□□□□□ -1.19
SCN1A-204ENST00000423058 ZBTB8OSQ8IWT0 167 aa7.6□□□□□ -1.19
SCN1A-204ENST00000423058 P3H4Q92791 437 aa7.6□□□□□ -1.19
SCN1A-204ENST00000423058 KDM3AQ9Y4C1 1321 aa7.6□□□□□ -1.19
SCN1A-204ENST00000423058 RASSF2P50749 326 aa7.6□□□□□ -1.19
SCN1A-204ENST00000423058 PRR16Q569H4 304 aa7.6□□□□□ -1.19
SCN1A-204ENST00000423058 MCF2L2Q86YR7 1114 aa7.6□□□□□ -1.19
SCN1A-204ENST00000423058 RSAD2Q8WXG1 361 aa7.6□□□□□ -1.19
SCN1A-204ENST00000423058 CAPZA3Q96KX2 299 aa7.6□□□□□ -1.19
SCN1A-204ENST00000423058 RPS6KC1Q96S38 1066 aa7.6□□□□□ -1.19
SCN1A-204ENST00000423058 HIBADHP31937 336 aaKnown RBP7.6□□□□□ -1.19
SCN1A-204ENST00000423058 CALCRLQ16602 461 aa7.6□□□□□ -1.19
SCN1A-204ENST00000423058 TTLL7Q6ZT98 887 aa7.6□□□□□ -1.19
SCN1A-204ENST00000423058 FCHSD1Q86WN1 690 aa7.6□□□□□ -1.19
SCN1A-204ENST00000423058 DCAF5Q96JK2 942 aa7.6□□□□□ -1.19
SCN1A-204ENST00000423058 ABCC1P33527 1531 aa7.6□□□□□ -1.19
SCN1A-204ENST00000423058 GCNT3O95395 438 aa7.6□□□□□ -1.19
SCN1A-204ENST00000423058 SKILP12757 684 aa7.6□□□□□ -1.19
SCN1A-204ENST00000423058 IFT20Q8IY31 132 aa7.6□□□□□ -1.19
SCN1A-204ENST00000423058 BBS5Q8N3I7 341 aa7.6□□□□□ -1.19
SCN1A-204ENST00000423058 FAM76AQ8TAV0 307 aa7.6□□□□□ -1.19
SCN1A-204ENST00000423058 MCUR1Q96AQ8 359 aa7.6□□□□□ -1.19
SCN1A-204ENST00000423058 NUCKS1Q9H1E3 243 aaKnown RBP7.6□□□□□ -1.19
SCN1A-204ENST00000423058 RBSNQ9H1K0 784 aa7.6□□□□□ -1.19
SCN1A-204ENST00000423058 HELLSQ9NRZ9 838 aa7.6□□□□□ -1.19
SCN1A-204ENST00000423058 DUOX2Q9NRD8 1548 aa7.6□□□□□ -1.19
SCN1A-204ENST00000423058 CFAP74Q9C0B2 1584 aa7.6□□□□□ -1.19
SCN1A-204ENST00000423058 XPOTO43592 962 aaKnown RBP7.6□□□□□ -1.19
SCN1A-204ENST00000423058 INPP1P49441 399 aa7.6□□□□□ -1.19
SCN1A-204ENST00000423058 PPP2R5BQ15173 497 aa7.6□□□□□ -1.19
SCN1A-204ENST00000423058 LMBR1LQ6UX01 489 aa7.6□□□□□ -1.19
SCN1A-204ENST00000423058 SKA2Q8WVK7 121 aaPredicted RBP7.6□□□□□ -1.19
SCN1A-204ENST00000423058 SDCCAG3Q96C92 435 aa7.6□□□□□ -1.19
SCN1A-204ENST00000423058 KDM5BQ9UGL1 1544 aa7.6□□□□□ -1.19
SCN1A-204ENST00000423058 IBTKQ9P2D0 1353 aaPredicted RBP7.6□□□□□ -1.19
SCN1A-204ENST00000423058 TLDC2A0PJX2 215 aa7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms