RNA–Protein interactions for RNA: ENST00000420138.5

GPC1-202, Transcript of glypican 1, humanhuman

TSL 5 BASIC

Gene GPC1, Length 1,835 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-202ENST00000420138 RXRAP19793 462 aa24.56■■□□□ 1.52
GPC1-202ENST00000420138 CDC27P30260 824 aa24.56■■□□□ 1.52
GPC1-202ENST00000420138 WTAPQ15007 396 aa24.56■■□□□ 1.52
GPC1-202ENST00000420138 FOXD4L6Q3SYB3 417 aaPredicted RBP24.56■■□□□ 1.52
GPC1-202ENST00000420138 FOXD4L3Q6VB84 417 aaPredicted RBP24.56■■□□□ 1.52
GPC1-202ENST00000420138 PSMD1Q99460 953 aa24.56■■□□□ 1.52
GPC1-202ENST00000420138 NID2Q14112 1375 aa24.55■■□□□ 1.52
GPC1-202ENST00000420138 TNKSO95271 1327 aa24.55■■□□□ 1.52
GPC1-202ENST00000420138 FLT1P17948 1338 aa24.55■■□□□ 1.52
GPC1-202ENST00000420138 ZNF646O15015 1829 aaPredicted RBP24.55■■□□□ 1.52
GPC1-202ENST00000420138 ARFGEF1Q9Y6D6 1849 aa24.55■■□□□ 1.52
GPC1-202ENST00000420138 ZBTB43O43298 467 aa24.55■■□□□ 1.52
GPC1-202ENST00000420138 DHX16O60231 1041 aaKnown RBP24.55■■□□□ 1.52
GPC1-202ENST00000420138 ADD1P35611 737 aaKnown RBP24.55■■□□□ 1.52
GPC1-202ENST00000420138 METAP2P50579 478 aaKnown RBP eCLIP24.55■■□□□ 1.52
GPC1-202ENST00000420138 PLCD1P51178 756 aa24.55■■□□□ 1.52
GPC1-202ENST00000420138 SART3Q15020 963 aaKnown RBP24.55■■□□□ 1.52
GPC1-202ENST00000420138 SLC4A8Q2Y0W8 1093 aa24.55■■□□□ 1.52
GPC1-202ENST00000420138 NFXL1Q6ZNB6 911 aa24.55■■□□□ 1.52
GPC1-202ENST00000420138 MYL10Q9BUA6 226 aa24.55■■□□□ 1.52
GPC1-202ENST00000420138 PPIP5K2O43314 1243 aa24.54■■□□□ 1.52
GPC1-202ENST00000420138 MICU3Q86XE3 530 aa24.54■■□□□ 1.52
GPC1-202ENST00000420138 FAM184AQ8NB25 1140 aa24.54■■□□□ 1.52
GPC1-202ENST00000420138 ZSCAN10Q96SZ4 725 aaPredicted RBP24.54■■□□□ 1.52
GPC1-202ENST00000420138 SLC12A7Q9Y666 1083 aa24.54■■□□□ 1.52
GPC1-202ENST00000420138 DDX60LQ5H9U9 1706 aaKnown RBP24.54■■□□□ 1.52
GPC1-202ENST00000420138 YDJCA8MPS7 323 aa24.54■■□□□ 1.52
GPC1-202ENST00000420138 RANBP6O60518 1105 aaKnown RBP24.54■■□□□ 1.52
GPC1-202ENST00000420138 PRPF40AO75400 957 aaKnown RBP24.54■■□□□ 1.52
GPC1-202ENST00000420138 SLC3A2P08195 630 aaKnown RBP24.54■■□□□ 1.52
GPC1-202ENST00000420138 SCNN1DP51172 638 aa24.54■■□□□ 1.52
GPC1-202ENST00000420138 HHIPL2Q6UWX4 724 aa24.54■■□□□ 1.52
GPC1-202ENST00000420138 TMTC2Q8N394 836 aa24.54■■□□□ 1.52
GPC1-202ENST00000420138 ENAHQ8N8S7 591 aaPredicted RBP24.54■■□□□ 1.52
GPC1-202ENST00000420138 DYNLL2Q96FJ2 89 aa24.54■■□□□ 1.52
GPC1-202ENST00000420138 UBAC1Q9BSL1 405 aa24.54■■□□□ 1.52
GPC1-202ENST00000420138 USP17L3A6NCW0 530 aa24.53■■□□□ 1.52
GPC1-202ENST00000420138 USP17L4A6NCW7 530 aa24.53■■□□□ 1.52
GPC1-202ENST00000420138 CCDC69A6NI79 296 aa24.53■■□□□ 1.52
GPC1-202ENST00000420138 NTRK3Q16288 839 aa24.53■■□□□ 1.52
GPC1-202ENST00000420138 APOBEC3HQ6NTF7 200 aaKnown RBP24.53■■□□□ 1.52
GPC1-202ENST00000420138 USP17L1Q7RTZ2 530 aa24.53■■□□□ 1.52
GPC1-202ENST00000420138 NLGN2Q8NFZ4 835 aa24.53■■□□□ 1.52
GPC1-202ENST00000420138 SAP30BPQ9UHR5 308 aaKnown RBP24.53■■□□□ 1.52
GPC1-202ENST00000420138 BCS1LQ9Y276 419 aa24.53■■□□□ 1.52
GPC1-202ENST00000420138 ERICH2A1L162 156 aa24.52■■□□□ 1.52
GPC1-202ENST00000420138 PDE4BQ07343 736 aa24.52■■□□□ 1.52
GPC1-202ENST00000420138 PSME4Q14997 1843 aa24.52■■□□□ 1.52
GPC1-202ENST00000420138 FERMT3Q86UX7 667 aa24.51■■□□□ 1.51
GPC1-202ENST00000420138 CCDC144CPQ8IYA2 1237 aa24.51■■□□□ 1.51
GPC1-202ENST00000420138 MRIQ9BWK5 157 aa24.51■■□□□ 1.51
GPC1-202ENST00000420138 NAV1Q8NEY1 1877 aa24.51■■□□□ 1.51
GPC1-202ENST00000420138 CDK5RAP2Q96SN8 1893 aa24.51■■□□□ 1.51
GPC1-202ENST00000420138 GOLGA8AA7E2F4 631 aa24.51■■□□□ 1.51
GPC1-202ENST00000420138 WDHD1O75717 1129 aaPredicted RBP24.51■■□□□ 1.51
GPC1-202ENST00000420138 FAM47AQ5JRC9 791 aa24.51■■□□□ 1.51
GPC1-202ENST00000420138 GZF1Q9H116 711 aaPredicted RBP24.51■■□□□ 1.51
GPC1-202ENST00000420138 ATP6V1DQ9Y5K8 247 aa24.51■■□□□ 1.51
GPC1-202ENST00000420138 CPLX1O14810 134 aa24.5■■□□□ 1.51
GPC1-202ENST00000420138 CRKP46108 304 aa24.5■■□□□ 1.51
GPC1-202ENST00000420138 RCAN1P53805 252 aa24.5■■□□□ 1.51
GPC1-202ENST00000420138 KIAA0825Q8IV33 1275 aa24.5■■□□□ 1.51
GPC1-202ENST00000420138 TEKT1Q969V4 418 aa24.5■■□□□ 1.51
GPC1-202ENST00000420138 GDPD2Q9HCC8 539 aa24.5■■□□□ 1.51
GPC1-202ENST00000420138 ZNF277Q9NRM2 450 aaPredicted RBP24.5■■□□□ 1.51
GPC1-202ENST00000420138 COL4A5P29400 1685 aa24.5■■□□□ 1.51
GPC1-202ENST00000420138 POLR3DP05423 398 aaPredicted RBP24.49■■□□□ 1.51
GPC1-202ENST00000420138 RESTQ13127 1097 aa24.49■■□□□ 1.51
GPC1-202ENST00000420138 IQCA1Q86XH1 822 aa24.49■■□□□ 1.51
GPC1-202ENST00000420138 ZNF654Q8IZM8 581 aa24.49■■□□□ 1.51
GPC1-202ENST00000420138 TMEM87AQ8NBN3 555 aa24.49■■□□□ 1.51
GPC1-202ENST00000420138 DDX4Q9NQI0 724 aaKnown RBP24.49■■□□□ 1.51
GPC1-202ENST00000420138 ORC3Q9UBD5 711 aaPredicted RBP24.49■■□□□ 1.51
GPC1-202ENST00000420138 CNPY2Q9Y2B0 182 aa24.49■■□□□ 1.51
GPC1-202ENST00000420138 KIF3AQ9Y496 699 aa24.49■■□□□ 1.51
GPC1-202ENST00000420138 ADAMTSL1Q8N6G6 1762 aa24.49■■□□□ 1.51
GPC1-202ENST00000420138 NMT2O60551 498 aa24.49■■□□□ 1.51
GPC1-202ENST00000420138 DNM1Q05193 864 aaKnown RBP24.49■■□□□ 1.51
GPC1-202ENST00000420138 L1TD1Q5T7N2 865 aaKnown RBP24.49■■□□□ 1.51
GPC1-202ENST00000420138 CDC42EP5Q6NZY7 148 aa24.49■■□□□ 1.51
GPC1-202ENST00000420138 SLC44A5Q8NCS7 719 aa24.49■■□□□ 1.51
GPC1-202ENST00000420138 ZDHHC15Q96MV8 337 aa24.49■■□□□ 1.51
GPC1-202ENST00000420138 NT5C2P49902 561 aa24.48■■□□□ 1.51
GPC1-202ENST00000420138 HDLBPQ00341 1268 aaKnown RBP24.48■■□□□ 1.51
GPC1-202ENST00000420138 KLHL40Q2TBA0 621 aa24.48■■□□□ 1.51
GPC1-202ENST00000420138 FAM173BQ6P4H8 233 aa24.48■■□□□ 1.51
GPC1-202ENST00000420138 AMOTL1Q8IY63 956 aa24.48■■□□□ 1.51
GPC1-202ENST00000420138 LARGE2Q8N3Y3 721 aa24.48■■□□□ 1.51
GPC1-202ENST00000420138 VPS33BQ9H267 617 aa24.48■■□□□ 1.51
GPC1-202ENST00000420138 USP40Q9NVE5 1235 aa24.48■■□□□ 1.51
GPC1-202ENST00000420138 PCDHAC2Q9Y5I4 1007 aa24.48■■□□□ 1.51
GPC1-202ENST00000420138 H3BQV1 296 aa24.47■■□□□ 1.51
GPC1-202ENST00000420138 IFFO2Q5TF58 517 aa24.47■■□□□ 1.51
GPC1-202ENST00000420138 SYNE3Q6ZMZ3 975 aa24.47■■□□□ 1.51
GPC1-202ENST00000420138 FHDC1Q9C0D6 1143 aaPredicted RBP24.47■■□□□ 1.51
GPC1-202ENST00000420138 TAOK3Q9H2K8 898 aa24.47■■□□□ 1.51
GPC1-202ENST00000420138 IFIT1BQ5T764 474 aaKnown RBP24.47■■□□□ 1.51
GPC1-202ENST00000420138 RCSD1Q6JBY9 416 aa24.47■■□□□ 1.51
GPC1-202ENST00000420138 C16orf86Q6ZW13 317 aa24.47■■□□□ 1.51
GPC1-202ENST00000420138 USP48Q86UV5 1035 aa24.47■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms