RNA–Protein interactions for RNA: ENST00000417997.1

HMGB3P20-201, Transcript of high mobility group box 3 pseudogene 20, humanhuman

BASIC

Gene HMGB3P20, Length 600 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P20-201ENST00000417997 PRNPP04156 253 aa6.03□□□□□ -1.44
HMGB3P20-201ENST00000417997 TAL1P17542 331 aaPredicted RBP6.03□□□□□ -1.44
HMGB3P20-201ENST00000417997 PSMD2Q13200 908 aa6.03□□□□□ -1.44
HMGB3P20-201ENST00000417997 TTBK2Q6IQ55 1244 aa6.03□□□□□ -1.44
HMGB3P20-201ENST00000417997 FAM9AQ8IZU1 332 aaPredicted RBP6.03□□□□□ -1.44
HMGB3P20-201ENST00000417997 PLD6Q8N2A8 252 aaKnown RBP6.03□□□□□ -1.44
HMGB3P20-201ENST00000417997 DUSP23Q9BVJ7 150 aa6.03□□□□□ -1.44
HMGB3P20-201ENST00000417997 KRTAP4-8Q9BYQ9 185 aa6.03□□□□□ -1.44
HMGB3P20-201ENST00000417997 SLC5A6Q9Y289 635 aa6.03□□□□□ -1.44
HMGB3P20-201ENST00000417997 AK5Q9Y6K8 562 aa6.03□□□□□ -1.44
HMGB3P20-201ENST00000417997 COL17A1Q9UMD9 1497 aaPredicted RBP6.02□□□□□ -1.44
HMGB3P20-201ENST00000417997 PDS5BQ9NTI5 1447 aa6.02□□□□□ -1.45
HMGB3P20-201ENST00000417997 ITIH2P19823 946 aa6.02□□□□□ -1.45
HMGB3P20-201ENST00000417997 XPCQ01831 940 aaPredicted RBP6.02□□□□□ -1.45
HMGB3P20-201ENST00000417997 COL19A1Q14993 1142 aa6.02□□□□□ -1.45
HMGB3P20-201ENST00000417997 ZBTB37Q5TC79 503 aa6.02□□□□□ -1.45
HMGB3P20-201ENST00000417997 LRFN4Q6PJG9 635 aa6.02□□□□□ -1.45
HMGB3P20-201ENST00000417997 ZNF574Q6ZN55 896 aaPredicted RBP6.02□□□□□ -1.45
HMGB3P20-201ENST00000417997 HDXQ7Z353 690 aa6.02□□□□□ -1.45
HMGB3P20-201ENST00000417997 UBE3DQ7Z6J8 389 aa6.02□□□□□ -1.45
HMGB3P20-201ENST00000417997 ANKRD24Q8TF21 1146 aa6.02□□□□□ -1.45
HMGB3P20-201ENST00000417997 CACNA2D2Q9NY47 1150 aa6.02□□□□□ -1.45
HMGB3P20-201ENST00000417997 PARP2Q9UGN5 583 aa6.02□□□□□ -1.45
HMGB3P20-201ENST00000417997 KIF21BO75037 1637 aa6.01□□□□□ -1.45
HMGB3P20-201ENST00000417997 FANCGO15287 622 aa6.01□□□□□ -1.45
HMGB3P20-201ENST00000417997 PAX4O43316 350 aa6.01□□□□□ -1.45
HMGB3P20-201ENST00000417997 PTPN11Q06124 597 aaPredicted RBP6.01□□□□□ -1.45
HMGB3P20-201ENST00000417997 BNIP3Q12983 259 aa6.01□□□□□ -1.45
HMGB3P20-201ENST00000417997 INPP5AQ14642 412 aa6.01□□□□□ -1.45
HMGB3P20-201ENST00000417997 WIPI1Q5MNZ9 446 aaPredicted RBP6.01□□□□□ -1.45
HMGB3P20-201ENST00000417997 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.01□□□□□ -1.45
HMGB3P20-201ENST00000417997 AGBL5Q8NDL9 886 aa6.01□□□□□ -1.45
HMGB3P20-201ENST00000417997 NETO1Q8TDF5 533 aa6.01□□□□□ -1.45
HMGB3P20-201ENST00000417997 PLPPR2Q96GM1 343 aa6.01□□□□□ -1.45
HMGB3P20-201ENST00000417997 FAM161BQ96MY7 647 aa6.01□□□□□ -1.45
HMGB3P20-201ENST00000417997 PAK6Q9NQU5 681 aaPredicted RBP6.01□□□□□ -1.45
HMGB3P20-201ENST00000417997 ADGRE2Q9UHX3 823 aa6.01□□□□□ -1.45
HMGB3P20-201ENST00000417997 FGD5Q6ZNL6 1462 aa6.01□□□□□ -1.45
HMGB3P20-201ENST00000417997 TOPBP1Q92547 1522 aa6□□□□□ -1.45
HMGB3P20-201ENST00000417997 WDR97A6NE52 1622 aa6□□□□□ -1.45
HMGB3P20-201ENST00000417997 ETF1P62495 437 aaKnown RBP6□□□□□ -1.45
HMGB3P20-201ENST00000417997 SEPT6Q14141 434 aa6□□□□□ -1.45
HMGB3P20-201ENST00000417997 PLCL1Q15111 1095 aa6□□□□□ -1.45
HMGB3P20-201ENST00000417997 MEI1Q5TIA1 1274 aa6□□□□□ -1.45
HMGB3P20-201ENST00000417997 SCARA3Q6AZY7 606 aa6□□□□□ -1.45
HMGB3P20-201ENST00000417997 NFXL1Q6ZNB6 911 aa6□□□□□ -1.45
HMGB3P20-201ENST00000417997 NPAS4Q8IUM7 802 aa6□□□□□ -1.45
HMGB3P20-201ENST00000417997 STK11IPQ8N1F8 1099 aa6□□□□□ -1.45
HMGB3P20-201ENST00000417997 KCT2Q8NC54 265 aa6□□□□□ -1.45
HMGB3P20-201ENST00000417997 ZNF507Q8TCN5 953 aa6□□□□□ -1.45
HMGB3P20-201ENST00000417997 BCL7CQ8WUZ0 217 aaPredicted RBP6□□□□□ -1.45
HMGB3P20-201ENST00000417997 GZF1Q9H116 711 aaPredicted RBP6□□□□□ -1.45
HMGB3P20-201ENST00000417997 PRDM10Q9NQV6 1147 aa6□□□□□ -1.45
HMGB3P20-201ENST00000417997 U3KQE9 123 aa6□□□□□ -1.45
HMGB3P20-201ENST00000417997 SOGA1O94964 1423 aa5.99□□□□□ -1.45
HMGB3P20-201ENST00000417997 NTF4P34130 210 aa5.99□□□□□ -1.45
HMGB3P20-201ENST00000417997 CDK8P49336 464 aa5.99□□□□□ -1.45
HMGB3P20-201ENST00000417997 ARMCX6Q7L4S7 300 aa5.99□□□□□ -1.45
HMGB3P20-201ENST00000417997 GAL3ST3Q96A11 431 aa5.99□□□□□ -1.45
HMGB3P20-201ENST00000417997 MISP3Q96FF7 219 aa5.99□□□□□ -1.45
HMGB3P20-201ENST00000417997 GTF2IRD1Q9UHL9 959 aa5.99□□□□□ -1.45
HMGB3P20-201ENST00000417997 PCDHB5Q9Y5E4 795 aa5.99□□□□□ -1.45
HMGB3P20-201ENST00000417997 CEACAM5P06731 702 aa5.98□□□□□ -1.45
HMGB3P20-201ENST00000417997 CD96P40200 585 aa5.98□□□□□ -1.45
HMGB3P20-201ENST00000417997 LIG3P49916 1009 aa5.98□□□□□ -1.45
HMGB3P20-201ENST00000417997 RING1Q06587 406 aa5.98□□□□□ -1.45
HMGB3P20-201ENST00000417997 IFI16Q16666 785 aaKnown RBP5.98□□□□□ -1.45
HMGB3P20-201ENST00000417997 AOC3Q16853 763 aa5.98□□□□□ -1.45
HMGB3P20-201ENST00000417997 CCDC27Q2M243 656 aa5.98□□□□□ -1.45
HMGB3P20-201ENST00000417997 DNAJC14Q6Y2X3 702 aaPredicted RBP5.98□□□□□ -1.45
HMGB3P20-201ENST00000417997 SPRED2Q7Z698 418 aa5.98□□□□□ -1.45
HMGB3P20-201ENST00000417997 MRS2Q9HD23 443 aa5.98□□□□□ -1.45
HMGB3P20-201ENST00000417997 URB2Q14146 1524 aaKnown RBP5.98□□□□□ -1.45
HMGB3P20-201ENST00000417997 RUSC2Q8N2Y8 1516 aa5.98□□□□□ -1.45
HMGB3P20-201ENST00000417997 ERCC6Q03468 1493 aa5.97□□□□□ -1.45
HMGB3P20-201ENST00000417997 GOLGA3Q08378 1498 aa5.97□□□□□ -1.45
HMGB3P20-201ENST00000417997 MRC2Q9UBG0 1479 aa5.97□□□□□ -1.45
HMGB3P20-201ENST00000417997 TMEM265A0A087WTH1 108 aa5.97□□□□□ -1.45
HMGB3P20-201ENST00000417997 GNAT3A8MTJ3 354 aa5.97□□□□□ -1.45
HMGB3P20-201ENST00000417997 OXCT1P55809 520 aa5.97□□□□□ -1.45
HMGB3P20-201ENST00000417997 DAB2P98082 770 aa5.97□□□□□ -1.45
HMGB3P20-201ENST00000417997 CYFIP1Q7L576 1253 aa5.97□□□□□ -1.45
HMGB3P20-201ENST00000417997 JARID2Q92833 1246 aaPredicted RBP5.97□□□□□ -1.45
HMGB3P20-201ENST00000417997 HRASLS5Q96KN8 279 aa5.97□□□□□ -1.45
HMGB3P20-201ENST00000417997 HEXIM2Q96MH2 286 aaKnown RBP5.97□□□□□ -1.45
HMGB3P20-201ENST00000417997 MIR1-1HGQ9H1L0 117 aa5.97□□□□□ -1.45
HMGB3P20-201ENST00000417997 FBRSQ9HAH7 460 aa5.97□□□□□ -1.45
HMGB3P20-201ENST00000417997 VTI1BQ9UEU0 232 aa5.97□□□□□ -1.45
HMGB3P20-201ENST00000417997 TPX2Q9ULW0 747 aaKnown RBP5.97□□□□□ -1.45
HMGB3P20-201ENST00000417997 RNF114Q9Y508 228 aa5.97□□□□□ -1.45
HMGB3P20-201ENST00000417997 KIF27Q86VH2 1401 aa5.97□□□□□ -1.45
HMGB3P20-201ENST00000417997 PBRM1Q86U86 1689 aa5.96□□□□□ -1.46
HMGB3P20-201ENST00000417997 F6X3S4 739 aa5.96□□□□□ -1.46
HMGB3P20-201ENST00000417997 LRIG2O94898 1065 aa5.96□□□□□ -1.46
HMGB3P20-201ENST00000417997 CD8BP10966 210 aa5.96□□□□□ -1.46
HMGB3P20-201ENST00000417997 GRK4P32298 578 aa5.96□□□□□ -1.46
HMGB3P20-201ENST00000417997 RPS26P62854 115 aaKnown RBP5.96□□□□□ -1.46
HMGB3P20-201ENST00000417997 PRKCQQ04759 706 aa5.96□□□□□ -1.46
HMGB3P20-201ENST00000417997 TAF1CQ15572 869 aaPredicted RBP5.96□□□□□ -1.46
HMGB3P20-201ENST00000417997 DIEXFQ68CQ4 756 aaKnown RBP5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms