RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 CYP46A1Q9Y6A2 500 aa16.88■□□□□ 0.29
SF3B1-204ENST00000414963 PITPNM2Q9BZ72 1349 aa16.88■□□□□ 0.29
SF3B1-204ENST00000414963 WDR90Q96KV7 1748 aa16.87■□□□□ 0.29
SF3B1-204ENST00000414963 NAV1Q8NEY1 1877 aa16.87■□□□□ 0.29
SF3B1-204ENST00000414963 DDTLA6NHG4 134 aaPredicted RBP16.87■□□□□ 0.29
SF3B1-204ENST00000414963 HLA-DOAP06340 250 aa16.87■□□□□ 0.29
SF3B1-204ENST00000414963 CASTP20810 708 aaKnown RBP16.87■□□□□ 0.29
SF3B1-204ENST00000414963 RPS6KB1P23443 525 aa16.87■□□□□ 0.29
SF3B1-204ENST00000414963 EXOSC10Q01780 885 aaKnown RBP16.87■□□□□ 0.29
SF3B1-204ENST00000414963 EVX2Q03828 476 aa16.87■□□□□ 0.29
SF3B1-204ENST00000414963 PDE4BQ07343 736 aa16.87■□□□□ 0.29
SF3B1-204ENST00000414963 TRDNQ13061 729 aa16.87■□□□□ 0.29
SF3B1-204ENST00000414963 BLOC1S2Q6QNY1 142 aa16.87■□□□□ 0.29
SF3B1-204ENST00000414963 C16orf86Q6ZW13 317 aa16.87■□□□□ 0.29
SF3B1-204ENST00000414963 DHX32Q7L7V1 743 aaKnown RBP16.87■□□□□ 0.29
SF3B1-204ENST00000414963 APOBEC3FQ8IUX4 373 aaKnown RBP16.87■□□□□ 0.29
SF3B1-204ENST00000414963 MB21D2Q8IYB1 491 aaPredicted RBP16.87■□□□□ 0.29
SF3B1-204ENST00000414963 TAF1DQ9H5J8 278 aaPredicted RBP16.87■□□□□ 0.29
SF3B1-204ENST00000414963 ZNF287Q9HBT7 754 aa16.87■□□□□ 0.29
SF3B1-204ENST00000414963 WDR19Q8NEZ3 1342 aa16.87■□□□□ 0.29
SF3B1-204ENST00000414963 BAZ2AQ9UIF9 1905 aaKnown RBP16.86■□□□□ 0.29
SF3B1-204ENST00000414963 NEK4P51957 841 aa16.86■□□□□ 0.29
SF3B1-204ENST00000414963 MAP3K10Q02779 954 aa16.86■□□□□ 0.29
SF3B1-204ENST00000414963 RASA3Q14644 834 aa16.86■□□□□ 0.29
SF3B1-204ENST00000414963 RALYLQ86SE5 291 aaKnown RBP16.86■□□□□ 0.29
SF3B1-204ENST00000414963 FBXL16Q8N461 479 aa16.86■□□□□ 0.29
SF3B1-204ENST00000414963 TTC14Q96N46 770 aa16.86■□□□□ 0.29
SF3B1-204ENST00000414963 INCENPQ9NQS7 918 aa16.86■□□□□ 0.29
SF3B1-204ENST00000414963 SWAP70Q9UH65 585 aa16.86■□□□□ 0.29
SF3B1-204ENST00000414963 SERPINB13Q9UIV8 391 aa16.86■□□□□ 0.29
SF3B1-204ENST00000414963 ASTN2O75129 1339 aaPredicted RBP16.86■□□□□ 0.29
SF3B1-204ENST00000414963 NEDD4P46934 1319 aa16.86■□□□□ 0.29
SF3B1-204ENST00000414963 MCM5P33992 734 aa16.85■□□□□ 0.29
SF3B1-204ENST00000414963 CDK8P49336 464 aa16.85■□□□□ 0.29
SF3B1-204ENST00000414963 COL9A3Q14050 684 aaPredicted RBP16.85■□□□□ 0.29
SF3B1-204ENST00000414963 ANGEL2Q5VTE6 544 aaKnown RBP16.85■□□□□ 0.29
SF3B1-204ENST00000414963 PNMA8AQ86V59 439 aaPredicted RBP16.85■□□□□ 0.29
SF3B1-204ENST00000414963 ESR2Q92731 530 aa16.85■□□□□ 0.29
SF3B1-204ENST00000414963 SNX21Q969T3 373 aa16.85■□□□□ 0.29
SF3B1-204ENST00000414963 DYNLL2Q96FJ2 89 aa16.85■□□□□ 0.29
SF3B1-204ENST00000414963 MTA3Q9BTC8 594 aa16.85■□□□□ 0.29
SF3B1-204ENST00000414963 UPF3BQ9BZI7 483 aaKnown RBP16.85■□□□□ 0.29
SF3B1-204ENST00000414963 DEFB129Q9H1M3 183 aa16.85■□□□□ 0.29
SF3B1-204ENST00000414963 PPP2R3BQ9Y5P8 575 aa16.85■□□□□ 0.29
SF3B1-204ENST00000414963 SCN4AP35499 1836 aa16.84■□□□□ 0.29
SF3B1-204ENST00000414963 TBC1D12O60347 775 aa16.84■□□□□ 0.29
SF3B1-204ENST00000414963 ZSCAN29Q8IWY8 852 aaPredicted RBP16.84■□□□□ 0.29
SF3B1-204ENST00000414963 TEPSINQ96N21 525 aa16.84■□□□□ 0.29
SF3B1-204ENST00000414963 TMEM39BQ9GZU3 492 aa16.84■□□□□ 0.29
SF3B1-204ENST00000414963 PDRG1Q9NUG6 133 aa16.84■□□□□ 0.29
SF3B1-204ENST00000414963 GGA3Q9NZ52 723 aa16.84■□□□□ 0.29
SF3B1-204ENST00000414963 ZSWIM5Q9P217 1185 aa16.84■□□□□ 0.29
SF3B1-204ENST00000414963 HERC5Q9UII4 1024 aaKnown RBP16.84■□□□□ 0.29
SF3B1-204ENST00000414963 LAMB1P07942 1786 aa16.84■□□□□ 0.29
SF3B1-204ENST00000414963 MYH1P12882 1939 aa16.84■□□□□ 0.29
SF3B1-204ENST00000414963 B4E1Z4 1266 aa16.83■□□□□ 0.28
SF3B1-204ENST00000414963 ST18O60284 1047 aa16.83■□□□□ 0.28
SF3B1-204ENST00000414963 VEGFAP15692 232 aaPredicted RBP16.83■□□□□ 0.28
SF3B1-204ENST00000414963 ANP32AP39687 249 aaKnown RBP16.83■□□□□ 0.28
SF3B1-204ENST00000414963 ANTXR2P58335 489 aa16.83■□□□□ 0.28
SF3B1-204ENST00000414963 SLC4A8Q2Y0W8 1093 aa16.83■□□□□ 0.28
SF3B1-204ENST00000414963 CYB5R4Q7L1T6 521 aa16.83■□□□□ 0.28
SF3B1-204ENST00000414963 NKX2-3Q8TAU0 364 aa16.83■□□□□ 0.28
SF3B1-204ENST00000414963 CSRNP1Q96S65 589 aa16.83■□□□□ 0.28
SF3B1-204ENST00000414963 AGXT2Q9BYV1 514 aa16.83■□□□□ 0.28
SF3B1-204ENST00000414963 MKNK2Q9HBH9 465 aa16.83■□□□□ 0.28
SF3B1-204ENST00000414963 PRC1O43663 620 aa16.82■□□□□ 0.28
SF3B1-204ENST00000414963 KDM4AO75164 1064 aa16.82■□□□□ 0.28
SF3B1-204ENST00000414963 CPA1P15085 419 aa16.82■□□□□ 0.28
SF3B1-204ENST00000414963 RASA1P20936 1047 aa16.82■□□□□ 0.28
SF3B1-204ENST00000414963 SHMT1P34896 483 aa16.82■□□□□ 0.28
SF3B1-204ENST00000414963 MCM2P49736 904 aa16.82■□□□□ 0.28
SF3B1-204ENST00000414963 TATDN1Q6P1N9 297 aa16.82■□□□□ 0.28
SF3B1-204ENST00000414963 ZNF444Q8N0Y2 327 aaPredicted RBP16.82■□□□□ 0.28
SF3B1-204ENST00000414963 SLC44A5Q8NCS7 719 aa16.82■□□□□ 0.28
SF3B1-204ENST00000414963 DCPSQ96C86 337 aaKnown RBP16.82■□□□□ 0.28
SF3B1-204ENST00000414963 PRDM1O75626 825 aa16.81■□□□□ 0.28
SF3B1-204ENST00000414963 ANKRD1Q15327 319 aa16.81■□□□□ 0.28
SF3B1-204ENST00000414963 RRP12Q5JTH9 1297 aaKnown RBP16.81■□□□□ 0.28
SF3B1-204ENST00000414963 STK11IPQ8N1F8 1099 aa16.81■□□□□ 0.28
SF3B1-204ENST00000414963 CRACR2BQ8N4Y2 399 aaPredicted RBP16.81■□□□□ 0.28
SF3B1-204ENST00000414963 HOOK2Q96ED9 719 aa16.81■□□□□ 0.28
SF3B1-204ENST00000414963 TMEM87BQ96K49 555 aa16.81■□□□□ 0.28
SF3B1-204ENST00000414963 CCDC17Q96LX7 622 aa16.81■□□□□ 0.28
SF3B1-204ENST00000414963 DNAJC18Q9H819 358 aa16.81■□□□□ 0.28
SF3B1-204ENST00000414963 TOMM22Q9NS69 142 aa16.81■□□□□ 0.28
SF3B1-204ENST00000414963 TCP11L1Q9NUJ3 509 aa16.81■□□□□ 0.28
SF3B1-204ENST00000414963 RANBP6O60518 1105 aaKnown RBP16.8■□□□□ 0.28
SF3B1-204ENST00000414963 IGDCC4Q8TDY8 1250 aa16.8■□□□□ 0.28
SF3B1-204ENST00000414963 RRAGCQ9HB90 399 aa16.8■□□□□ 0.28
SF3B1-204ENST00000414963 CD2BP2O95400 341 aaKnown RBP16.79■□□□□ 0.28
SF3B1-204ENST00000414963 AK2P54819 239 aa16.79■□□□□ 0.28
SF3B1-204ENST00000414963 EVCP57679 992 aa16.79■□□□□ 0.28
SF3B1-204ENST00000414963 TFAP4Q01664 338 aa16.79■□□□□ 0.28
SF3B1-204ENST00000414963 TOB2Q14106 344 aaPredicted RBP16.79■□□□□ 0.28
SF3B1-204ENST00000414963 CCDC178Q5BJE1 867 aa16.79■□□□□ 0.28
SF3B1-204ENST00000414963 Q6ZUG5 572 aa16.79■□□□□ 0.28
SF3B1-204ENST00000414963 SULF1Q8IWU6 871 aa16.79■□□□□ 0.28
SF3B1-204ENST00000414963 CDAN1Q8IWY9 1227 aa16.79■□□□□ 0.28
SF3B1-204ENST00000414963 NEDD1Q8NHV4 660 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms