RNA–Protein interactions for RNA: ENST00000411819.1

MSH6-202, Transcript of mutS homolog 6, humanhuman

TSL 4

Gene MSH6, Length 548 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-202ENST00000411819 SIPA1L1O43166 1804 aa27.28■■□□□ 1.96
MSH6-202ENST00000411819 AACSQ86V21 672 aa27.28■■□□□ 1.96
MSH6-202ENST00000411819 ZNF333Q96JL9 665 aa27.28■■□□□ 1.96
MSH6-202ENST00000411819 CENPFP49454 3210 aa27.28■■□□□ 1.96
MSH6-202ENST00000411819 IDH1O75874 414 aaKnown RBP27.27■■□□□ 1.96
MSH6-202ENST00000411819 GNRH1P01148 92 aa27.27■■□□□ 1.96
MSH6-202ENST00000411819 PSMC4P43686 418 aa27.27■■□□□ 1.96
MSH6-202ENST00000411819 MAPKAPK5Q8IW41 473 aa27.27■■□□□ 1.96
MSH6-202ENST00000411819 TGFBRAP1Q8WUH2 860 aa27.27■■□□□ 1.96
MSH6-202ENST00000411819 FMNL1O95466 1100 aaPredicted RBP27.26■■□□□ 1.95
MSH6-202ENST00000411819 TMEM106CQ9BVX2 250 aa27.26■■□□□ 1.95
MSH6-202ENST00000411819 COG6Q9Y2V7 657 aa27.26■■□□□ 1.95
MSH6-202ENST00000411819 NDUFB9Q9Y6M9 179 aa27.26■■□□□ 1.95
MSH6-202ENST00000411819 FLT1P17948 1338 aa27.25■■□□□ 1.95
MSH6-202ENST00000411819 MYCP01106 439 aaPredicted RBP27.25■■□□□ 1.95
MSH6-202ENST00000411819 CYP7A1P22680 504 aa27.25■■□□□ 1.95
MSH6-202ENST00000411819 CTGFP29279 349 aa27.25■■□□□ 1.95
MSH6-202ENST00000411819 PRMT2P55345 433 aa27.25■■□□□ 1.95
MSH6-202ENST00000411819 HSP90AB4PQ58FF6 505 aa27.25■■□□□ 1.95
MSH6-202ENST00000411819 SH3TC2Q8TF17 1288 aa27.25■■□□□ 1.95
MSH6-202ENST00000411819 TRIM47Q96LD4 638 aa27.25■■□□□ 1.95
MSH6-202ENST00000411819 DHX36Q9H2U1 1008 aaKnown RBP27.25■■□□□ 1.95
MSH6-202ENST00000411819 IL1RAPL2Q9NP60 686 aa27.25■■□□□ 1.95
MSH6-202ENST00000411819 HERC5Q9UII4 1024 aaKnown RBP27.25■■□□□ 1.95
MSH6-202ENST00000411819 DDX19BQ9UMR2 479 aa27.25■■□□□ 1.95
MSH6-202ENST00000411819 MGAMO43451 1857 aa27.24■■□□□ 1.95
MSH6-202ENST00000411819 APBB1O00213 710 aa27.24■■□□□ 1.95
MSH6-202ENST00000411819 PPP4CP60510 307 aa27.24■■□□□ 1.95
MSH6-202ENST00000411819 SMCR8Q8TEV9 937 aaPredicted RBP27.24■■□□□ 1.95
MSH6-202ENST00000411819 TRIM34Q9BYJ4 488 aa27.24■■□□□ 1.95
MSH6-202ENST00000411819 PI4KBQ9UBF8 816 aa27.24■■□□□ 1.95
MSH6-202ENST00000411819 IGSF3O75054 1194 aa27.23■■□□□ 1.95
MSH6-202ENST00000411819 CAP2P40123 477 aa27.23■■□□□ 1.95
MSH6-202ENST00000411819 SRRDQ9UH36 339 aa27.23■■□□□ 1.95
MSH6-202ENST00000411819 SLC45A1Q9Y2W3 748 aa27.23■■□□□ 1.95
MSH6-202ENST00000411819 LOC285556D6RIA3 1793 aa27.22■■□□□ 1.95
MSH6-202ENST00000411819 BCRP11274 1271 aa27.22■■□□□ 1.95
MSH6-202ENST00000411819 OSBPP22059 807 aa27.22■■□□□ 1.95
MSH6-202ENST00000411819 HOXD10P28358 340 aa27.22■■□□□ 1.95
MSH6-202ENST00000411819 DYNLL1P63167 89 aaKnown RBP27.22■■□□□ 1.95
MSH6-202ENST00000411819 SLC4A8Q2Y0W8 1093 aa27.22■■□□□ 1.95
MSH6-202ENST00000411819 PRPF38BQ5VTL8 546 aaKnown RBP27.22■■□□□ 1.95
MSH6-202ENST00000411819 CRACR2BQ8N4Y2 399 aaPredicted RBP27.22■■□□□ 1.95
MSH6-202ENST00000411819 RHPN1Q8TCX5 695 aa27.22■■□□□ 1.95
MSH6-202ENST00000411819 BCL11AQ9H165 835 aa27.22■■□□□ 1.95
MSH6-202ENST00000411819 RCAN3Q9UKA8 241 aa27.22■■□□□ 1.95
MSH6-202ENST00000411819 AGTPBP1Q9UPW5 1226 aa27.22■■□□□ 1.95
MSH6-202ENST00000411819 MYPNQ86TC9 1320 aa27.21■■□□□ 1.95
MSH6-202ENST00000411819 HMMRO75330 724 aa27.21■■□□□ 1.95
MSH6-202ENST00000411819 EN2P19622 333 aaPredicted RBP27.21■■□□□ 1.95
MSH6-202ENST00000411819 FCGRTP55899 365 aa27.21■■□□□ 1.95
MSH6-202ENST00000411819 SPP2Q13103 211 aa27.21■■□□□ 1.95
MSH6-202ENST00000411819 RRP1BQ14684 758 aaKnown RBP27.21■■□□□ 1.95
MSH6-202ENST00000411819 MAGEB6Q8N7X4 407 aa27.21■■□□□ 1.95
MSH6-202ENST00000411819 MIGA1Q8NAN2 632 aa27.21■■□□□ 1.95
MSH6-202ENST00000411819 ZNF280CQ8ND82 737 aa27.21■■□□□ 1.95
MSH6-202ENST00000411819 RAET1EQ8TD07 263 aa27.21■■□□□ 1.95
MSH6-202ENST00000411819 SAP30BPQ9UHR5 308 aaKnown RBP27.21■■□□□ 1.95
MSH6-202ENST00000411819 PALD1Q9ULE6 856 aa27.21■■□□□ 1.95
MSH6-202ENST00000411819 MYH1P12882 1939 aa27.2■■□□□ 1.95
MSH6-202ENST00000411819 TREML2Q5T2D2 321 aa27.2■■□□□ 1.94
MSH6-202ENST00000411819 RPAP2Q8IXW5 612 aaPredicted RBP27.2■■□□□ 1.94
MSH6-202ENST00000411819 TBC1D2Q9BYX2 928 aa27.2■■□□□ 1.94
MSH6-202ENST00000411819 ANTXR1Q9H6X2 564 aa27.2■■□□□ 1.94
MSH6-202ENST00000411819 USP17L5A8MUK1 530 aa27.19■■□□□ 1.94
MSH6-202ENST00000411819 HLA-DOAP06340 250 aa27.19■■□□□ 1.94
MSH6-202ENST00000411819 MAP3K12Q12852 859 aa27.19■■□□□ 1.94
MSH6-202ENST00000411819 CLASRPQ8N2M8 674 aaKnown RBP27.19■■□□□ 1.94
MSH6-202ENST00000411819 AS3MTQ9HBK9 375 aa27.19■■□□□ 1.94
MSH6-202ENST00000411819 PNMA3Q9UL41 463 aa27.19■■□□□ 1.94
MSH6-202ENST00000411819 HMGCS2P54868 508 aa27.18■■□□□ 1.94
MSH6-202ENST00000411819 PROCA1Q8NCQ7 364 aaPredicted RBP27.18■■□□□ 1.94
MSH6-202ENST00000411819 KIF1BPQ96EK5 621 aa27.18■■□□□ 1.94
MSH6-202ENST00000411819 DNAJC18Q9H819 358 aa27.18■■□□□ 1.94
MSH6-202ENST00000411819 ZBTB40Q9NUA8 1239 aa27.18■■□□□ 1.94
MSH6-202ENST00000411819 BRCA2P51587 3418 aa27.17■■□□□ 1.94
MSH6-202ENST00000411819 USP5P45974 858 aa27.17■■□□□ 1.94
MSH6-202ENST00000411819 CHMP4BQ9H444 224 aaKnown RBP27.17■■□□□ 1.94
MSH6-202ENST00000411819 PRKCZQ05513 592 aa27.16■■□□□ 1.94
MSH6-202ENST00000411819 CERS3Q8IU89 383 aa27.16■■□□□ 1.94
MSH6-202ENST00000411819 FOXP4Q8IVH2 680 aaPredicted RBP27.16■■□□□ 1.94
MSH6-202ENST00000411819 GDF11O95390 407 aa27.15■■□□□ 1.94
MSH6-202ENST00000411819 ASNSP08243 561 aa27.15■■□□□ 1.94
MSH6-202ENST00000411819 IFIT2P09913 472 aaKnown RBP27.15■■□□□ 1.94
MSH6-202ENST00000411819 GRK4P32298 578 aa27.15■■□□□ 1.94
MSH6-202ENST00000411819 SIRT2Q8IXJ6 389 aa27.15■■□□□ 1.94
MSH6-202ENST00000411819 PABPC4Q13310 644 aaKnown RBP eCLIP27.14■■□□□ 1.94
MSH6-202ENST00000411819 TTF1Q15361 905 aaPredicted RBP27.14■■□□□ 1.94
MSH6-202ENST00000411819 ANKRD13CQ8N6S4 541 aa27.14■■□□□ 1.94
MSH6-202ENST00000411819 DNAJC2Q99543 621 aaKnown RBP27.14■■□□□ 1.94
MSH6-202ENST00000411819 BIN2Q9UBW5 565 aaPredicted RBP27.14■■□□□ 1.94
MSH6-202ENST00000411819 TNPO2O14787 897 aaKnown RBP27.13■■□□□ 1.93
MSH6-202ENST00000411819 MTMR2Q13614 643 aa27.13■■□□□ 1.93
MSH6-202ENST00000411819 NAV1Q8NEY1 1877 aa27.13■■□□□ 1.93
MSH6-202ENST00000411819 RAB11FIP3O75154 756 aa27.12■■□□□ 1.93
MSH6-202ENST00000411819 MTFR1Q15390 333 aa27.12■■□□□ 1.93
MSH6-202ENST00000411819 SHROOM1Q2M3G4 852 aaPredicted RBP27.12■■□□□ 1.93
MSH6-202ENST00000411819 METTL16Q86W50 562 aaKnown RBP27.12■■□□□ 1.93
MSH6-202ENST00000411819 ZBTB21Q9ULJ3 1066 aa27.12■■□□□ 1.93
MSH6-202ENST00000411819 GABRQQ9UN88 632 aa27.12■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms