RNA–Protein interactions for RNA: ENST00000409810.6

CHMP3-205, Transcript of charged multivesicular body protein 3, humanhuman

TSL 5

Gene CHMP3, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-205ENST00000409810 ERO1BQ86YB8 467 aa13.12□□□□□ -0.31
CHMP3-205ENST00000409810 FOXP4Q8IVH2 680 aaPredicted RBP13.12□□□□□ -0.31
CHMP3-205ENST00000409810 PLEKHM2Q8IWE5 1019 aa13.12□□□□□ -0.31
CHMP3-205ENST00000409810 OPTNQ96CV9 577 aa13.12□□□□□ -0.31
CHMP3-205ENST00000409810 ARMT1Q9H993 441 aa13.12□□□□□ -0.31
CHMP3-205ENST00000409810 PICK1Q9NRD5 415 aa13.12□□□□□ -0.31
CHMP3-205ENST00000409810 ATP8A2Q9NTI2 1148 aa13.12□□□□□ -0.31
CHMP3-205ENST00000409810 SAP30BPQ9UHR5 308 aaKnown RBP13.12□□□□□ -0.31
CHMP3-205ENST00000409810 TRIM6-TRIM34B2RNG4 842 aa13.11□□□□□ -0.31
CHMP3-205ENST00000409810 CTNND1O60716 968 aaKnown RBP13.11□□□□□ -0.31
CHMP3-205ENST00000409810 POLR3DP05423 398 aaPredicted RBP13.11□□□□□ -0.31
CHMP3-205ENST00000409810 INPP5BP32019 993 aa13.11□□□□□ -0.31
CHMP3-205ENST00000409810 INHBEP58166 350 aa13.11□□□□□ -0.31
CHMP3-205ENST00000409810 PPATQ06203 517 aa13.11□□□□□ -0.31
CHMP3-205ENST00000409810 SCYL3Q8IZE3 742 aa13.11□□□□□ -0.31
CHMP3-205ENST00000409810 SDR42E1Q8WUS8 393 aa13.11□□□□□ -0.31
CHMP3-205ENST00000409810 ZKSCAN4Q969J2 545 aaPredicted RBP13.11□□□□□ -0.31
CHMP3-205ENST00000409810 OTUD5Q96G74 571 aa13.11□□□□□ -0.31
CHMP3-205ENST00000409810 ZIC5Q96T25 663 aa13.11□□□□□ -0.31
CHMP3-205ENST00000409810 PUS7LQ9H0K6 701 aaKnown RBP13.11□□□□□ -0.31
CHMP3-205ENST00000409810 PALD1Q9ULE6 856 aa13.11□□□□□ -0.31
CHMP3-205ENST00000409810 SNCAIPQ9Y6H5 919 aa13.11□□□□□ -0.31
CHMP3-205ENST00000409810 PHF20L1A8MW92 1017 aa13.1□□□□□ -0.31
CHMP3-205ENST00000409810 GNAT2P19087 354 aa13.1□□□□□ -0.31
CHMP3-205ENST00000409810 GTF2A2P52657 109 aa13.1□□□□□ -0.31
CHMP3-205ENST00000409810 PPIL2Q13356 520 aa13.1□□□□□ -0.31
CHMP3-205ENST00000409810 SLFNL1Q499Z3 407 aa13.1□□□□□ -0.31
CHMP3-205ENST00000409810 OTUD7BQ6GQQ9 843 aa13.1□□□□□ -0.31
CHMP3-205ENST00000409810 CENPQQ7L2Z9 268 aaPredicted RBP13.1□□□□□ -0.31
CHMP3-205ENST00000409810 EHD4Q9H223 541 aa13.1□□□□□ -0.31
CHMP3-205ENST00000409810 DCP1AQ9NPI6 582 aaPredicted RBP13.1□□□□□ -0.31
CHMP3-205ENST00000409810 MCM9Q9NXL9 1143 aa13.1□□□□□ -0.31
CHMP3-205ENST00000409810 SAGE1Q9NXZ1 904 aa13.1□□□□□ -0.31
CHMP3-205ENST00000409810 SERPINB13Q9UIV8 391 aa13.1□□□□□ -0.31
CHMP3-205ENST00000409810 TAOK2Q9UL54 1235 aa13.1□□□□□ -0.31
CHMP3-205ENST00000409810 SLC4A4Q9Y6R1 1079 aa13.1□□□□□ -0.31
CHMP3-205ENST00000409810 PTPRFP10586 1907 aa13.09□□□□□ -0.31
CHMP3-205ENST00000409810 PHIPQ8WWQ0 1821 aa13.09□□□□□ -0.31
CHMP3-205ENST00000409810 GPAA1O43292 621 aa13.09□□□□□ -0.31
CHMP3-205ENST00000409810 ALDH1A1P00352 501 aa13.09□□□□□ -0.31
CHMP3-205ENST00000409810 CHGBP05060 677 aa13.09□□□□□ -0.31
CHMP3-205ENST00000409810 TM4SF4P48230 202 aa13.09□□□□□ -0.31
CHMP3-205ENST00000409810 CTCFP49711 727 aaPredicted RBP13.09□□□□□ -0.31
CHMP3-205ENST00000409810 METTL16Q86W50 562 aaKnown RBP13.09□□□□□ -0.31
CHMP3-205ENST00000409810 OSBP2Q969R2 916 aa13.09□□□□□ -0.31
CHMP3-205ENST00000409810 RILPL2Q969X0 211 aa13.09□□□□□ -0.31
CHMP3-205ENST00000409810 TBC1D2Q9BYX2 928 aa13.09□□□□□ -0.31
CHMP3-205ENST00000409810 FAM196BA6NMK8 535 aa13.08□□□□□ -0.32
CHMP3-205ENST00000409810 FOXN1O15353 648 aa13.08□□□□□ -0.32
CHMP3-205ENST00000409810 GJA5P36382 358 aa13.08□□□□□ -0.32
CHMP3-205ENST00000409810 SNAPC2Q13487 334 aa13.08□□□□□ -0.32
CHMP3-205ENST00000409810 SLC4A8Q2Y0W8 1093 aa13.08□□□□□ -0.32
CHMP3-205ENST00000409810 ZMYM1Q5SVZ6 1142 aa13.08□□□□□ -0.32
CHMP3-205ENST00000409810 GIMAP6Q6P9H5 292 aa13.08□□□□□ -0.32
CHMP3-205ENST00000409810 CCDC136Q96JN2 1154 aa13.08□□□□□ -0.32
CHMP3-205ENST00000409810 STRBPQ96SI9 672 aaKnown RBP13.08□□□□□ -0.32
CHMP3-205ENST00000409810 GINM1Q9NU53 330 aa13.08□□□□□ -0.32
CHMP3-205ENST00000409810 ARPP21Q9UBL0 812 aaPredicted RBP13.08□□□□□ -0.32
CHMP3-205ENST00000409810 M0R2C6 588 aa13.07□□□□□ -0.32
CHMP3-205ENST00000409810 HIP1O00291 1037 aa13.07□□□□□ -0.32
CHMP3-205ENST00000409810 IRF6O14896 467 aa13.07□□□□□ -0.32
CHMP3-205ENST00000409810 PRKAB2O43741 272 aa13.07□□□□□ -0.32
CHMP3-205ENST00000409810 ASNSP08243 561 aa13.07□□□□□ -0.32
CHMP3-205ENST00000409810 CETPP11597 493 aa13.07□□□□□ -0.32
CHMP3-205ENST00000409810 CAP2P40123 477 aa13.07□□□□□ -0.32
CHMP3-205ENST00000409810 CNKSR2Q8WXI2 1034 aa13.07□□□□□ -0.32
CHMP3-205ENST00000409810 NACAP1Q9BZK3 213 aa13.07□□□□□ -0.32
CHMP3-205ENST00000409810 AS3MTQ9HBK9 375 aa13.07□□□□□ -0.32
CHMP3-205ENST00000409810 HELLSQ9NRZ9 838 aa13.07□□□□□ -0.32
CHMP3-205ENST00000409810 SWAP70Q9UH65 585 aa13.07□□□□□ -0.32
CHMP3-205ENST00000409810 CCL15-CCL14A0A0B4J2E2 113 aa13.06□□□□□ -0.32
CHMP3-205ENST00000409810 TESPA1A2RU30 521 aaPredicted RBP13.06□□□□□ -0.32
CHMP3-205ENST00000409810 CXCL11O14625 94 aa13.06□□□□□ -0.32
CHMP3-205ENST00000409810 APPP05067 770 aa13.06□□□□□ -0.32
CHMP3-205ENST00000409810 PTPRAP18433 802 aa13.06□□□□□ -0.32
CHMP3-205ENST00000409810 PDE4AP27815 886 aa13.06□□□□□ -0.32
CHMP3-205ENST00000409810 PLCD1P51178 756 aa13.06□□□□□ -0.32
CHMP3-205ENST00000409810 CCL15Q16663 113 aa13.06□□□□□ -0.32
CHMP3-205ENST00000409810 TTC22Q5TAA0 569 aa13.06□□□□□ -0.32
CHMP3-205ENST00000409810 ERICH6BQ5W0A0 696 aa13.06□□□□□ -0.32
CHMP3-205ENST00000409810 IFNL1Q8IU54 200 aa13.06□□□□□ -0.32
CHMP3-205ENST00000409810 DNAJC18Q9H819 358 aa13.06□□□□□ -0.32
CHMP3-205ENST00000409810 RNF186Q9NXI6 227 aa13.06□□□□□ -0.32
CHMP3-205ENST00000409810 KCNH4Q9UQ05 1017 aa13.06□□□□□ -0.32
CHMP3-205ENST00000409810 ZHX2Q9Y6X8 837 aa13.06□□□□□ -0.32
CHMP3-205ENST00000409810 CASP8AP2Q9UKL3 1982 aa13.05□□□□□ -0.32
CHMP3-205ENST00000409810 USP17L5A8MUK1 530 aa13.05□□□□□ -0.32
CHMP3-205ENST00000409810 PATL2C9JE40 543 aaKnown RBP13.05□□□□□ -0.32
CHMP3-205ENST00000409810 TRPA1O75762 1119 aa13.05□□□□□ -0.32
CHMP3-205ENST00000409810 SLURP2P0DP57 97 aa13.05□□□□□ -0.32
CHMP3-205ENST00000409810 HSPA8P11142 646 aaKnown RBP13.05□□□□□ -0.32
CHMP3-205ENST00000409810 TDO2P48775 406 aa13.05□□□□□ -0.32
CHMP3-205ENST00000409810 MFAP1P55081 439 aaKnown RBP13.05□□□□□ -0.32
CHMP3-205ENST00000409810 CERKLQ49MI3 558 aaPredicted RBP13.05□□□□□ -0.32
CHMP3-205ENST00000409810 MCMDC2Q4G0Z9 681 aa13.05□□□□□ -0.32
CHMP3-205ENST00000409810 TATDN1Q6P1N9 297 aa13.05□□□□□ -0.32
CHMP3-205ENST00000409810 MS4A4AQ96JQ5 239 aa13.05□□□□□ -0.32
CHMP3-205ENST00000409810 DIAPH3Q9NSV4 1193 aa13.05□□□□□ -0.32
CHMP3-205ENST00000409810 GSG1L2A8MUP6 293 aa13.04□□□□□ -0.32
CHMP3-205ENST00000409810 USP17L12C9JPN9 530 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms