RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 DIXDC1Q155Q3 683 aa15.4■□□□□ 0.06
VPS54-203ENST00000409558 PDCL2Q8N4E4 241 aa15.4■□□□□ 0.06
VPS54-203ENST00000409558 JMYQ8N9B5 988 aa15.4■□□□□ 0.06
VPS54-203ENST00000409558 TMEM87BQ96K49 555 aa15.4■□□□□ 0.06
VPS54-203ENST00000409558 YEATS4O95619 227 aa15.39■□□□□ 0.05
VPS54-203ENST00000409558 FGFR2P21802 821 aa15.39■□□□□ 0.05
VPS54-203ENST00000409558 FANCCQ00597 558 aa15.39■□□□□ 0.05
VPS54-203ENST00000409558 EARS2Q5JPH6 523 aaKnown RBP15.39■□□□□ 0.05
VPS54-203ENST00000409558 NOSTRINQ8IVI9 506 aa15.39■□□□□ 0.05
VPS54-203ENST00000409558 LINC00116Q8NCU8 138 aa15.39■□□□□ 0.05
VPS54-203ENST00000409558 DYNLL2Q96FJ2 89 aa15.39■□□□□ 0.05
VPS54-203ENST00000409558 MCM9Q9NXL9 1143 aa15.39■□□□□ 0.05
VPS54-203ENST00000409558 COL18A1P39060 1754 aa15.39■□□□□ 0.05
VPS54-203ENST00000409558 TSPY2A6NKD2 308 aa15.39■□□□□ 0.05
VPS54-203ENST00000409558 F8W031 263 aaPredicted RBP15.39■□□□□ 0.05
VPS54-203ENST00000409558 ZPR1O75312 459 aa15.39■□□□□ 0.05
VPS54-203ENST00000409558 SYT10Q6XYQ8 523 aa15.39■□□□□ 0.05
VPS54-203ENST00000409558 RASGRP2Q7LDG7 609 aa15.39■□□□□ 0.05
VPS54-203ENST00000409558 KRT23Q9C075 422 aa15.39■□□□□ 0.05
VPS54-203ENST00000409558 BLZF1Q9H2G9 400 aa15.39■□□□□ 0.05
VPS54-203ENST00000409558 VWA3AA6NCI4 1184 aa15.39■□□□□ 0.05
VPS54-203ENST00000409558 TPM3P06753 285 aa15.39■□□□□ 0.05
VPS54-203ENST00000409558 PDE4BQ07343 736 aa15.39■□□□□ 0.05
VPS54-203ENST00000409558 RBM43Q6ZSC3 357 aaKnown RBP15.39■□□□□ 0.05
VPS54-203ENST00000409558 STX8Q9UNK0 236 aa15.39■□□□□ 0.05
VPS54-203ENST00000409558 DCCP43146 1447 aa15.39■□□□□ 0.05
VPS54-203ENST00000409558 USP54Q70EL1 1684 aa15.39■□□□□ 0.05
VPS54-203ENST00000409558 NTSR2O95665 410 aa15.39■□□□□ 0.05
VPS54-203ENST00000409558 FOXP4Q8IVH2 680 aaPredicted RBP15.39■□□□□ 0.05
VPS54-203ENST00000409558 GPKOWQ92917 476 aaPredicted RBP eCLIP15.39■□□□□ 0.05
VPS54-203ENST00000409558 SETDB2Q96T68 719 aa15.39■□□□□ 0.05
VPS54-203ENST00000409558 MCM7P33993 719 aa15.38■□□□□ 0.05
VPS54-203ENST00000409558 NTRK3Q16288 839 aa15.38■□□□□ 0.05
VPS54-203ENST00000409558 ZMYND15Q9H091 742 aa15.38■□□□□ 0.05
VPS54-203ENST00000409558 FBXO3Q9UK99 471 aa15.38■□□□□ 0.05
VPS54-203ENST00000409558 ERVV-1B6SEH8 477 aa15.38■□□□□ 0.05
VPS54-203ENST00000409558 USP17L8P0C7I0 530 aa15.38■□□□□ 0.05
VPS54-203ENST00000409558 GOLGA8HP0CJ92 632 aa15.38■□□□□ 0.05
VPS54-203ENST00000409558 SLC44A5Q8NCS7 719 aa15.38■□□□□ 0.05
VPS54-203ENST00000409558 ESR2Q92731 530 aa15.38■□□□□ 0.05
VPS54-203ENST00000409558 MINPP1Q9UNW1 487 aa15.38■□□□□ 0.05
VPS54-203ENST00000409558 ZNF652Q9Y2D9 606 aa15.38■□□□□ 0.05
VPS54-203ENST00000409558 WNT7AO00755 349 aa15.38■□□□□ 0.05
VPS54-203ENST00000409558 CMA1P23946 247 aa15.38■□□□□ 0.05
VPS54-203ENST00000409558 ADKP55263 362 aaKnown RBP15.38■□□□□ 0.05
VPS54-203ENST00000409558 DZIP1Q86YF9 867 aaKnown RBP15.38■□□□□ 0.05
VPS54-203ENST00000409558 PRIMPOLQ96LW4 560 aa15.38■□□□□ 0.05
VPS54-203ENST00000409558 KRI1Q8N9T8 703 aaKnown RBP15.37■□□□□ 0.05
VPS54-203ENST00000409558 ZSWIM4Q9H7M6 989 aa15.37■□□□□ 0.05
VPS54-203ENST00000409558 AMIGO3Q86WK7 504 aa15.37■□□□□ 0.05
VPS54-203ENST00000409558 CSRNP2Q9H175 543 aa15.37■□□□□ 0.05
VPS54-203ENST00000409558 SPTLC3Q9NUV7 552 aa15.37■□□□□ 0.05
VPS54-203ENST00000409558 N4BP2Q86UW6 1770 aaPredicted RBP15.37■□□□□ 0.05
VPS54-203ENST00000409558 ERCC3P19447 782 aa15.37■□□□□ 0.05
VPS54-203ENST00000409558 USP5P45974 858 aa15.37■□□□□ 0.05
VPS54-203ENST00000409558 NLRP12P59046 1061 aa15.37■□□□□ 0.05
VPS54-203ENST00000409558 PIK3AP1Q6ZUJ8 805 aa15.37■□□□□ 0.05
VPS54-203ENST00000409558 METTL16Q86W50 562 aaKnown RBP15.37■□□□□ 0.05
VPS54-203ENST00000409558 IQCA1Q86XH1 822 aa15.37■□□□□ 0.05
VPS54-203ENST00000409558 TULP1O00294 542 aaPredicted RBP15.36■□□□□ 0.05
VPS54-203ENST00000409558 TOB1P50616 345 aaPredicted RBP15.36■□□□□ 0.05
VPS54-203ENST00000409558 CATIPQ7Z7H3 387 aa15.36■□□□□ 0.05
VPS54-203ENST00000409558 ENAHQ8N8S7 591 aaPredicted RBP15.36■□□□□ 0.05
VPS54-203ENST00000409558 FAM84BQ96KN1 310 aaPredicted RBP15.36■□□□□ 0.05
VPS54-203ENST00000409558 NLRP3Q96P20 1036 aa15.36■□□□□ 0.05
VPS54-203ENST00000409558 CRYBG1Q9Y4K1 1723 aa15.36■□□□□ 0.05
VPS54-203ENST00000409558 NLRP5P59047 1200 aa15.36■□□□□ 0.05
VPS54-203ENST00000409558 CNNM2Q9H8M5 875 aa15.36■□□□□ 0.05
VPS54-203ENST00000409558 ZNF215Q9UL58 517 aaPredicted RBP15.36■□□□□ 0.05
VPS54-203ENST00000409558 NBPF11Q86T75 865 aa15.36■□□□□ 0.05
VPS54-203ENST00000409558 CRACR2BQ8N4Y2 399 aaPredicted RBP15.36■□□□□ 0.05
VPS54-203ENST00000409558 EIF6P56537 245 aaKnown RBP15.35■□□□□ 0.05
VPS54-203ENST00000409558 RPS8P62241 208 aaKnown RBP15.35■□□□□ 0.05
VPS54-203ENST00000409558 MECOMQ03112 1051 aa15.35■□□□□ 0.05
VPS54-203ENST00000409558 ARMCX5Q6P1M9 558 aa15.35■□□□□ 0.05
VPS54-203ENST00000409558 DESI2Q9BSY9 194 aa15.35■□□□□ 0.05
VPS54-203ENST00000409558 DNAJC5Q9H3Z4 198 aa15.35■□□□□ 0.05
VPS54-203ENST00000409558 SAMSN1Q9NSI8 373 aaKnown RBP15.35■□□□□ 0.05
VPS54-203ENST00000409558 DNAI1Q9UI46 699 aa15.35■□□□□ 0.05
VPS54-203ENST00000409558 A0A1W2PQ27 194 aa15.35■□□□□ 0.05
VPS54-203ENST00000409558 A0A1W2PQ64 194 aa15.35■□□□□ 0.05
VPS54-203ENST00000409558 A0A1W2PQD8 194 aa15.35■□□□□ 0.05
VPS54-203ENST00000409558 ADAMTS3O15072 1205 aa15.35■□□□□ 0.05
VPS54-203ENST00000409558 MMP1P03956 469 aa15.35■□□□□ 0.05
VPS54-203ENST00000409558 TOP1P11387 765 aaKnown RBP15.35■□□□□ 0.05
VPS54-203ENST00000409558 UBE2Q2Q8WVN8 375 aa15.35■□□□□ 0.05
VPS54-203ENST00000409558 ZNF219Q9P2Y4 722 aaPredicted RBP15.35■□□□□ 0.05
VPS54-203ENST00000409558 NFE2L3Q9Y4A8 694 aa15.35■□□□□ 0.05
VPS54-203ENST00000409558 PARP10Q53GL7 1025 aa15.34■□□□□ 0.05
VPS54-203ENST00000409558 KRBA2Q6ZNG9 492 aa15.34■□□□□ 0.05
VPS54-203ENST00000409558 TNS2Q63HR2 1409 aa15.34■□□□□ 0.05
VPS54-203ENST00000409558 FMNL1O95466 1100 aaPredicted RBP15.34■□□□□ 0.05
VPS54-203ENST00000409558 PTPAQ15257 358 aa15.34■□□□□ 0.05
VPS54-203ENST00000409558 RNF41Q9H4P4 317 aaPredicted RBP15.34■□□□□ 0.05
VPS54-203ENST00000409558 MKNK2Q9HBH9 465 aa15.34■□□□□ 0.05
VPS54-203ENST00000409558 ZHX1Q9UKY1 873 aaPredicted RBP15.34■□□□□ 0.05
VPS54-203ENST00000409558 HIBADHP31937 336 aaKnown RBP15.34■□□□□ 0.05
VPS54-203ENST00000409558 KARSQ15046 597 aaKnown RBP15.34■□□□□ 0.05
VPS54-203ENST00000409558 MAPKAPK5Q8IW41 473 aa15.34■□□□□ 0.05
VPS54-203ENST00000409558 SMARCE1Q969G3 411 aa15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms