RNA–Protein interactions for RNA: ENST00000404484.8

TPM1-208, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-208ENST00000404484 BRF1Q92994 677 aa24.74■■□□□ 1.55
TPM1-208ENST00000404484 GLIS2Q9BZE0 524 aaPredicted RBP24.74■■□□□ 1.55
TPM1-208ENST00000404484 NT5C2P49902 561 aa24.73■■□□□ 1.55
TPM1-208ENST00000404484 CTDSPL2Q05D32 466 aa24.73■■□□□ 1.55
TPM1-208ENST00000404484 SH3RF3Q8TEJ3 882 aaPredicted RBP24.73■■□□□ 1.55
TPM1-208ENST00000404484 TMEM87BQ96K49 555 aa24.73■■□□□ 1.55
TPM1-208ENST00000404484 LARP6Q9BRS8 491 aaKnown RBP24.73■■□□□ 1.55
TPM1-208ENST00000404484 NEDD4P46934 1319 aa24.72■■□□□ 1.55
TPM1-208ENST00000404484 F8W031 263 aaPredicted RBP24.72■■□□□ 1.55
TPM1-208ENST00000404484 LARGE1O95461 756 aa24.72■■□□□ 1.55
TPM1-208ENST00000404484 CTR9Q6PD62 1173 aa24.72■■□□□ 1.55
TPM1-208ENST00000404484 HHIPL2Q6UWX4 724 aa24.72■■□□□ 1.55
TPM1-208ENST00000404484 DNAJC5GQ8N7S2 189 aa24.72■■□□□ 1.55
TPM1-208ENST00000404484 MTA3Q9BTC8 594 aa24.72■■□□□ 1.55
TPM1-208ENST00000404484 MRIQ9BWK5 157 aa24.72■■□□□ 1.55
TPM1-208ENST00000404484 DAGLAQ9Y4D2 1042 aa24.72■■□□□ 1.55
TPM1-208ENST00000404484 LAMB1P07942 1786 aa24.72■■□□□ 1.55
TPM1-208ENST00000404484 USP17L12C9JPN9 530 aa24.71■■□□□ 1.55
TPM1-208ENST00000404484 USP17L21D6R901 530 aa24.71■■□□□ 1.55
TPM1-208ENST00000404484 MMP14P50281 582 aa24.71■■□□□ 1.55
TPM1-208ENST00000404484 HDLBPQ00341 1268 aaKnown RBP24.71■■□□□ 1.55
TPM1-208ENST00000404484 NBPF9Q3BBW0 867 aa24.71■■□□□ 1.55
TPM1-208ENST00000404484 CDC37L1Q7L3B6 337 aa24.71■■□□□ 1.55
TPM1-208ENST00000404484 TEX11Q8IYF3 940 aa24.71■■□□□ 1.55
TPM1-208ENST00000404484 TEKT1Q969V4 418 aa24.71■■□□□ 1.55
TPM1-208ENST00000404484 LRRC2Q9BYS8 371 aa24.71■■□□□ 1.55
TPM1-208ENST00000404484 HDAC9Q9UKV0 1011 aa24.71■■□□□ 1.55
TPM1-208ENST00000404484 BAZ2AQ9UIF9 1905 aaKnown RBP24.71■■□□□ 1.55
TPM1-208ENST00000404484 POLR2AP24928 1970 aaKnown RBP24.71■■□□□ 1.55
TPM1-208ENST00000404484 B4E1Z4 1266 aa24.71■■□□□ 1.55
TPM1-208ENST00000404484 DLK2Q6UY11 383 aa24.71■■□□□ 1.55
TPM1-208ENST00000404484 USP48Q86UV5 1035 aa24.71■■□□□ 1.55
TPM1-208ENST00000404484 CCDC83Q8IWF9 413 aa24.71■■□□□ 1.55
TPM1-208ENST00000404484 ZNF274Q96GC6 653 aaPredicted RBP24.71■■□□□ 1.55
TPM1-208ENST00000404484 SMC3Q9UQE7 1217 aa24.71■■□□□ 1.55
TPM1-208ENST00000404484 WNT10BO00744 389 aa24.7■■□□□ 1.54
TPM1-208ENST00000404484 EVCP57679 992 aa24.7■■□□□ 1.54
TPM1-208ENST00000404484 DCPSQ96C86 337 aaKnown RBP24.7■■□□□ 1.54
TPM1-208ENST00000404484 CREBZFQ9NS37 354 aa24.7■■□□□ 1.54
TPM1-208ENST00000404484 MCM9Q9NXL9 1143 aa24.7■■□□□ 1.54
TPM1-208ENST00000404484 GGA3Q9NZ52 723 aa24.7■■□□□ 1.54
TPM1-208ENST00000404484 NAV1Q8NEY1 1877 aa24.69■■□□□ 1.54
TPM1-208ENST00000404484 TMEM88BA6NKF7 163 aa24.69■■□□□ 1.54
TPM1-208ENST00000404484 ANTXR2P58335 489 aa24.69■■□□□ 1.54
TPM1-208ENST00000404484 SART3Q15020 963 aaKnown RBP24.69■■□□□ 1.54
TPM1-208ENST00000404484 RAB3GAP1Q15042 981 aa24.69■■□□□ 1.54
TPM1-208ENST00000404484 CHST3Q7LGC8 479 aa24.69■■□□□ 1.54
TPM1-208ENST00000404484 KRT26Q7Z3Y9 468 aa24.69■■□□□ 1.54
TPM1-208ENST00000404484 ESR2Q92731 530 aa24.69■■□□□ 1.54
TPM1-208ENST00000404484 TOMM22Q9NS69 142 aa24.69■■□□□ 1.54
TPM1-208ENST00000404484 MKRN1Q9UHC7 482 aaKnown RBP24.69■■□□□ 1.54
TPM1-208ENST00000404484 ANGEL1Q9UNK9 670 aaKnown RBP24.69■■□□□ 1.54
TPM1-208ENST00000404484 ANGEL2Q5VTE6 544 aaKnown RBP24.68■■□□□ 1.54
TPM1-208ENST00000404484 CST9Q5W186 159 aa24.68■■□□□ 1.54
TPM1-208ENST00000404484 TGFBRAP1Q8WUH2 860 aa24.68■■□□□ 1.54
TPM1-208ENST00000404484 GTF3C6Q969F1 213 aa24.68■■□□□ 1.54
TPM1-208ENST00000404484 ZBED3Q96IU2 234 aaPredicted RBP24.68■■□□□ 1.54
TPM1-208ENST00000404484 PFKFB2O60825 505 aa24.67■■□□□ 1.54
TPM1-208ENST00000404484 FGRP09769 529 aa24.67■■□□□ 1.54
TPM1-208ENST00000404484 RHBDL3P58872 404 aa24.67■■□□□ 1.54
TPM1-208ENST00000404484 APOBRQ0VD83 1088 aa24.67■■□□□ 1.54
TPM1-208ENST00000404484 PCDHAC2Q9Y5I4 1007 aa24.67■■□□□ 1.54
TPM1-208ENST00000404484 PCNTO95613 3336 aa24.67■■□□□ 1.54
TPM1-208ENST00000404484 KDM4AO75164 1064 aa24.67■■□□□ 1.54
TPM1-208ENST00000404484 PDIA4P13667 645 aaKnown RBP24.67■■□□□ 1.54
TPM1-208ENST00000404484 PDE4BQ07343 736 aa24.67■■□□□ 1.54
TPM1-208ENST00000404484 RRP12Q5JTH9 1297 aaKnown RBP24.67■■□□□ 1.54
TPM1-208ENST00000404484 CYB5R4Q7L1T6 521 aa24.67■■□□□ 1.54
TPM1-208ENST00000404484 NECAB1Q8N987 351 aa24.67■■□□□ 1.54
TPM1-208ENST00000404484 ROBO3Q96MS0 1386 aa24.66■■□□□ 1.54
TPM1-208ENST00000404484 ADM5C9JUS6 153 aa24.66■■□□□ 1.54
TPM1-208ENST00000404484 SH2B2O14492 632 aaPredicted RBP24.66■■□□□ 1.54
TPM1-208ENST00000404484 ORC4O43929 436 aa24.66■■□□□ 1.54
TPM1-208ENST00000404484 C12orf60Q5U649 245 aa24.66■■□□□ 1.54
TPM1-208ENST00000404484 ZDHHC15Q96MV8 337 aa24.66■■□□□ 1.54
TPM1-208ENST00000404484 ZSWIM5Q9P217 1185 aa24.66■■□□□ 1.54
TPM1-208ENST00000404484 SCAF8Q9UPN6 1271 aaKnown RBP24.66■■□□□ 1.54
TPM1-208ENST00000404484 ERICH2A1L162 156 aa24.65■■□□□ 1.54
TPM1-208ENST00000404484 LIFRP42702 1097 aa24.65■■□□□ 1.54
TPM1-208ENST00000404484 CRKP46108 304 aa24.65■■□□□ 1.54
TPM1-208ENST00000404484 DLGAP5Q15398 846 aa24.65■■□□□ 1.54
TPM1-208ENST00000404484 CFAP100Q494V2 611 aa24.65■■□□□ 1.54
TPM1-208ENST00000404484 SULF1Q8IWU6 871 aa24.65■■□□□ 1.54
TPM1-208ENST00000404484 MTMR14Q8NCE2 650 aa24.65■■□□□ 1.54
TPM1-208ENST00000404484 LLPHQ9BRT6 129 aaKnown RBP24.65■■□□□ 1.54
TPM1-208ENST00000404484 SERPINA10Q9UK55 444 aa24.65■■□□□ 1.54
TPM1-208ENST00000404484 CDK5RAP2Q96SN8 1893 aa24.64■■□□□ 1.54
TPM1-208ENST00000404484 CYP2D7A0A087X1C5 515 aa24.64■■□□□ 1.54
TPM1-208ENST00000404484 ST3GAL1Q11201 340 aa24.64■■□□□ 1.54
TPM1-208ENST00000404484 STK3Q13188 491 aa24.64■■□□□ 1.54
TPM1-208ENST00000404484 TMEM67Q5HYA8 995 aa24.64■■□□□ 1.54
TPM1-208ENST00000404484 MAPKAPK5Q8IW41 473 aa24.64■■□□□ 1.54
TPM1-208ENST00000404484 ZNF287Q9HBT7 754 aa24.64■■□□□ 1.54
TPM1-208ENST00000404484 FLT1P17948 1338 aa24.64■■□□□ 1.53
TPM1-208ENST00000404484 FOCADQ5VW36 1801 aa24.64■■□□□ 1.53
TPM1-208ENST00000404484 IFIT3O14879 490 aaKnown RBP24.63■■□□□ 1.53
TPM1-208ENST00000404484 CELF2O95319 508 aaKnown RBP24.63■■□□□ 1.53
TPM1-208ENST00000404484 POLR3DP05423 398 aaPredicted RBP24.63■■□□□ 1.53
TPM1-208ENST00000404484 PDIA3P30101 505 aaKnown RBP24.63■■□□□ 1.53
TPM1-208ENST00000404484 TMTC2Q8N394 836 aa24.63■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms