RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 ZSCAN12O43309 604 aa24.01■■□□□ 1.43
CTCF-202ENST00000401394 ITGA6P23229 1130 aa24.01■■□□□ 1.43
CTCF-202ENST00000401394 RBL2Q08999 1139 aa24.01■■□□□ 1.43
CTCF-202ENST00000401394 RNF216Q9NWF9 866 aaPredicted RBP24.01■■□□□ 1.43
CTCF-202ENST00000401394 PRDM1O75626 825 aa24■■□□□ 1.43
CTCF-202ENST00000401394 NOSTRINQ8IVI9 506 aa24■■□□□ 1.43
CTCF-202ENST00000401394 FUT8Q9BYC5 575 aa24■■□□□ 1.43
CTCF-202ENST00000401394 CSRNP2Q9H175 543 aa24■■□□□ 1.43
CTCF-202ENST00000401394 CABP5Q9NP86 173 aa24■■□□□ 1.43
CTCF-202ENST00000401394 CNNM1Q9NRU3 951 aa24■■□□□ 1.43
CTCF-202ENST00000401394 TFR2Q9UP52 801 aa24■■□□□ 1.43
CTCF-202ENST00000401394 ZNF18P17022 549 aa24■■□□□ 1.43
CTCF-202ENST00000401394 PNKPQ96T60 521 aa24■■□□□ 1.43
CTCF-202ENST00000401394 CDC5LQ99459 802 aaKnown RBP24■■□□□ 1.43
CTCF-202ENST00000401394 FBXO2Q9UK22 296 aaPredicted RBP24■■□□□ 1.43
CTCF-202ENST00000401394 IQSEC3Q9UPP2 1182 aaPredicted RBP24■■□□□ 1.43
CTCF-202ENST00000401394 RNF225M0QZC1 329 aaPredicted RBP24■■□□□ 1.43
CTCF-202ENST00000401394 PDE6AP16499 860 aa24■■□□□ 1.43
CTCF-202ENST00000401394 SLC12A7Q9Y666 1083 aa24■■□□□ 1.43
CTCF-202ENST00000401394 RHOXF2BP0C7M4 288 aa23.99■■□□□ 1.43
CTCF-202ENST00000401394 RAD51AP2Q09MP3 1159 aa23.99■■□□□ 1.43
CTCF-202ENST00000401394 RSRC2Q7L4I2 434 aaKnown RBP23.99■■□□□ 1.43
CTCF-202ENST00000401394 JMYQ8N9B5 988 aa23.99■■□□□ 1.43
CTCF-202ENST00000401394 ACRBPQ8NEB7 543 aa23.99■■□□□ 1.43
CTCF-202ENST00000401394 RHOXF2Q9BQY4 288 aa23.99■■□□□ 1.43
CTCF-202ENST00000401394 CUTAO60888 179 aa23.99■■□□□ 1.43
CTCF-202ENST00000401394 PHACTR2O75167 634 aa23.99■■□□□ 1.43
CTCF-202ENST00000401394 MIGA1Q8NAN2 632 aa23.99■■□□□ 1.43
CTCF-202ENST00000401394 HINFPQ9BQA5 517 aa23.99■■□□□ 1.43
CTCF-202ENST00000401394 TRIM66O15016 1216 aa23.98■■□□□ 1.43
CTCF-202ENST00000401394 ZFYP08048 801 aaPredicted RBP23.98■■□□□ 1.43
CTCF-202ENST00000401394 CCT6AP40227 531 aaKnown RBP23.98■■□□□ 1.43
CTCF-202ENST00000401394 TAF3Q5VWG9 929 aa23.98■■□□□ 1.43
CTCF-202ENST00000401394 RIPOR2Q9Y4F9 1068 aa23.98■■□□□ 1.43
CTCF-202ENST00000401394 MYO5AQ9Y4I1 1855 aaKnown RBP23.98■■□□□ 1.43
CTCF-202ENST00000401394 MBD4O95243 580 aa23.97■■□□□ 1.43
CTCF-202ENST00000401394 SSRP1Q08945 709 aaKnown RBP23.97■■□□□ 1.43
CTCF-202ENST00000401394 DPYDQ12882 1025 aa23.97■■□□□ 1.43
CTCF-202ENST00000401394 TCIRG1Q13488 830 aa23.97■■□□□ 1.43
CTCF-202ENST00000401394 LONRF2Q1L5Z9 754 aa23.97■■□□□ 1.43
CTCF-202ENST00000401394 DNAJC10Q8IXB1 793 aa23.97■■□□□ 1.43
CTCF-202ENST00000401394 RAI14Q9P0K7 980 aa23.97■■□□□ 1.43
CTCF-202ENST00000401394 AKAP2Q9Y2D5 859 aa23.97■■□□□ 1.43
CTCF-202ENST00000401394 BAZ2BQ9UIF8 2168 aaKnown RBP23.97■■□□□ 1.43
CTCF-202ENST00000401394 LMAN1P49257 510 aa23.97■■□□□ 1.43
CTCF-202ENST00000401394 MAGEB6Q8N7X4 407 aa23.97■■□□□ 1.43
CTCF-202ENST00000401394 TTLL11Q8NHH1 800 aa23.97■■□□□ 1.43
CTCF-202ENST00000401394 AIDAQ96BJ3 306 aa23.97■■□□□ 1.43
CTCF-202ENST00000401394 ISCA1Q9BUE6 129 aa23.97■■□□□ 1.43
CTCF-202ENST00000401394 PDE11AQ9HCR9 933 aa23.97■■□□□ 1.43
CTCF-202ENST00000401394 ARFGAP3Q9NP61 516 aa23.97■■□□□ 1.43
CTCF-202ENST00000401394 ASAP1Q9ULH1 1129 aa23.97■■□□□ 1.43
CTCF-202ENST00000401394 MAPK8IP1Q9UQF2 711 aa23.97■■□□□ 1.43
CTCF-202ENST00000401394 ADAMTS7Q9UKP4 1686 aa23.96■■□□□ 1.43
CTCF-202ENST00000401394 ANKRD65E5RJM6 399 aa23.96■■□□□ 1.43
CTCF-202ENST00000401394 SKIDA1Q1XH10 827 aa23.96■■□□□ 1.43
CTCF-202ENST00000401394 FOXR1Q6PIV2 292 aa23.96■■□□□ 1.43
CTCF-202ENST00000401394 TOM1L2Q6ZVM7 507 aa23.96■■□□□ 1.43
CTCF-202ENST00000401394 STRBPQ96SI9 672 aaKnown RBP23.96■■□□□ 1.43
CTCF-202ENST00000401394 MPHOSPH8Q99549 860 aa23.96■■□□□ 1.43
CTCF-202ENST00000401394 UBXN6Q9BZV1 441 aa23.96■■□□□ 1.43
CTCF-202ENST00000401394 EIF4ENIF1Q9NRA8 985 aaKnown RBP23.96■■□□□ 1.43
CTCF-202ENST00000401394 ZNF569Q5MCW4 686 aa23.96■■□□□ 1.43
CTCF-202ENST00000401394 CALCOCO1Q9P1Z2 691 aa23.96■■□□□ 1.43
CTCF-202ENST00000401394 MORC3Q14149 939 aa23.95■■□□□ 1.43
CTCF-202ENST00000401394 BLZF1Q9H2G9 400 aa23.95■■□□□ 1.43
CTCF-202ENST00000401394 WTIPA6NIX2 430 aaPredicted RBP23.95■■□□□ 1.42
CTCF-202ENST00000401394 STX10O60499 249 aa23.95■■□□□ 1.42
CTCF-202ENST00000401394 CASP14P31944 242 aa23.95■■□□□ 1.42
CTCF-202ENST00000401394 NR1I3Q14994 352 aa23.95■■□□□ 1.42
CTCF-202ENST00000401394 EEF2KMTQ96G04 330 aa23.95■■□□□ 1.42
CTCF-202ENST00000401394 ANKZF1Q9H8Y5 726 aa23.95■■□□□ 1.42
CTCF-202ENST00000401394 VPS54Q9P1Q0 977 aa23.95■■□□□ 1.42
CTCF-202ENST00000401394 TRIM10Q9UDY6 481 aa23.95■■□□□ 1.42
CTCF-202ENST00000401394 PHRF1Q9P1Y6 1649 aaKnown RBP23.95■■□□□ 1.42
CTCF-202ENST00000401394 ACTN4O43707 911 aaKnown RBP23.94■■□□□ 1.42
CTCF-202ENST00000401394 MMP1P03956 469 aa23.94■■□□□ 1.42
CTCF-202ENST00000401394 FXR1P51114 621 aaKnown RBP eCLIP23.94■■□□□ 1.42
CTCF-202ENST00000401394 IFNL3Q8IZI9 196 aa23.94■■□□□ 1.42
CTCF-202ENST00000401394 IGSF22Q8N9C0 903 aa23.94■■□□□ 1.42
CTCF-202ENST00000401394 PLEKHA4Q9H4M7 779 aa23.94■■□□□ 1.42
CTCF-202ENST00000401394 RIC1Q4ADV7 1423 aa23.94■■□□□ 1.42
CTCF-202ENST00000401394 CPLX2Q6PUV4 134 aaKnown RBP23.94■■□□□ 1.42
CTCF-202ENST00000401394 APTXQ7Z2E3 356 aaKnown RBP23.94■■□□□ 1.42
CTCF-202ENST00000401394 GPR161Q8N6U8 529 aaKnown RBP23.94■■□□□ 1.42
CTCF-202ENST00000401394 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.94■■□□□ 1.429e-7■■■□□ 18.2
CTCF-202ENST00000401394 ADAM21Q9UKJ8 722 aa23.94■■□□□ 1.42
CTCF-202ENST00000401394 C4AP0C0L4 1744 aa23.94■■□□□ 1.42
CTCF-202ENST00000401394 C4BP0C0L5 1744 aa23.94■■□□□ 1.42
CTCF-202ENST00000401394 CCP110O43303 1012 aa23.94■■□□□ 1.42
CTCF-202ENST00000401394 PTPREP23469 700 aa23.94■■□□□ 1.42
CTCF-202ENST00000401394 EVX2Q03828 476 aa23.94■■□□□ 1.42
CTCF-202ENST00000401394 ZCRB1Q8TBF4 217 aaKnown RBP23.94■■□□□ 1.42
CTCF-202ENST00000401394 PPIL4Q8WUA2 492 aaKnown RBP eCLIP23.94■■□□□ 1.42
CTCF-202ENST00000401394 DDX24Q9GZR7 859 aaKnown RBP eCLIP23.94■■□□□ 1.42
CTCF-202ENST00000401394 STRN4Q9NRL3 753 aa23.94■■□□□ 1.42
CTCF-202ENST00000401394 FAM237AA0A1B0GTK4 181 aa23.93■■□□□ 1.42
CTCF-202ENST00000401394 ADAMTS3O15072 1205 aa23.93■■□□□ 1.42
CTCF-202ENST00000401394 CDKL5O76039 1030 aa23.93■■□□□ 1.42
CTCF-202ENST00000401394 GDAP1L1Q96MZ0 367 aa23.93■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms