RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 CFAP43Q8NDM7 1665 aa12.72□□□□□ -0.37
TTC28-201ENST00000397906 TFAP4Q01664 338 aa12.72□□□□□ -0.37
TTC28-201ENST00000397906 CDAN1Q8IWY9 1227 aa12.72□□□□□ -0.37
TTC28-201ENST00000397906 TNFAIP1Q13829 316 aa12.72□□□□□ -0.37
TTC28-201ENST00000397906 CALCRLQ16602 461 aa12.72□□□□□ -0.37
TTC28-201ENST00000397906 SELENOSQ9BQE4 189 aa12.72□□□□□ -0.37
TTC28-201ENST00000397906 AS3MTQ9HBK9 375 aa12.72□□□□□ -0.37
TTC28-201ENST00000397906 SPC25Q9HBM1 224 aa12.72□□□□□ -0.37
TTC28-201ENST00000397906 KRT86O43790 486 aa12.72□□□□□ -0.37
TTC28-201ENST00000397906 RPS8P62241 208 aaKnown RBP12.72□□□□□ -0.37
TTC28-201ENST00000397906 KLHL40Q2TBA0 621 aa12.72□□□□□ -0.37
TTC28-201ENST00000397906 DDX12PQ92771 950 aa12.72□□□□□ -0.37
TTC28-201ENST00000397906 MLXIPQ9HAP2 919 aa12.72□□□□□ -0.37
TTC28-201ENST00000397906 GAS8O95995 478 aa12.72□□□□□ -0.37
TTC28-201ENST00000397906 ABL1P00519 1130 aa12.72□□□□□ -0.37
TTC28-201ENST00000397906 E7EVH7 732 aa12.72□□□□□ -0.37
TTC28-201ENST00000397906 CCDC186Q7Z3E2 898 aa12.72□□□□□ -0.37
TTC28-201ENST00000397906 SDR42E1Q8WUS8 393 aa12.72□□□□□ -0.37
TTC28-201ENST00000397906 PARD3Q8TEW0 1356 aa12.72□□□□□ -0.37
TTC28-201ENST00000397906 PNMA6EA0A0J9YXQ4 647 aa12.72□□□□□ -0.37
TTC28-201ENST00000397906 TPH2Q8IWU9 490 aa12.72□□□□□ -0.37
TTC28-201ENST00000397906 LRRC47Q8N1G4 583 aaKnown RBP12.72□□□□□ -0.37
TTC28-201ENST00000397906 IRX5P78411 483 aaPredicted RBP12.72□□□□□ -0.37
TTC28-201ENST00000397906 IFRD2Q12894 506 aaPredicted RBP12.72□□□□□ -0.37
TTC28-201ENST00000397906 SNX29Q8TEQ0 813 aa12.72□□□□□ -0.37
TTC28-201ENST00000397906 ANGEL1Q9UNK9 670 aaKnown RBP12.72□□□□□ -0.37
TTC28-201ENST00000397906 ALAS1P13196 640 aa12.72□□□□□ -0.37
TTC28-201ENST00000397906 CALUO43852 315 aaPredicted RBP12.71□□□□□ -0.37
TTC28-201ENST00000397906 BCAMP50895 628 aa12.71□□□□□ -0.37
TTC28-201ENST00000397906 MRPL44Q9H9J2 332 aaKnown RBP12.71□□□□□ -0.37
TTC28-201ENST00000397906 SPECC1LQ69YQ0 1117 aa12.71□□□□□ -0.37
TTC28-201ENST00000397906 VPS16Q9H269 839 aa12.71□□□□□ -0.37
TTC28-201ENST00000397906 IFNKQ9P0W0 207 aa12.71□□□□□ -0.37
TTC28-201ENST00000397906 KMT5BQ4FZB7 885 aa12.71□□□□□ -0.37
TTC28-201ENST00000397906 CTAGE15A4D2H0 777 aa12.71□□□□□ -0.37
TTC28-201ENST00000397906 CTAGE8P0CG41 777 aa12.71□□□□□ -0.37
TTC28-201ENST00000397906 PLCD1P51178 756 aa12.71□□□□□ -0.37
TTC28-201ENST00000397906 CTAGE6Q86UF2 777 aa12.71□□□□□ -0.37
TTC28-201ENST00000397906 CTAGE4Q8IX94 777 aa12.71□□□□□ -0.37
TTC28-201ENST00000397906 PEG3Q9GZU2 1588 aa12.71□□□□□ -0.37
TTC28-201ENST00000397906 TTLL7Q6ZT98 887 aa12.71□□□□□ -0.37
TTC28-201ENST00000397906 FAM200AQ8TCP9 573 aa12.71□□□□□ -0.37
TTC28-201ENST00000397906 KCNJ14Q9UNX9 436 aa12.71□□□□□ -0.37
TTC28-201ENST00000397906 KCNQ3O43525 872 aa12.71□□□□□ -0.37
TTC28-201ENST00000397906 CRKLP46109 303 aaKnown RBP12.71□□□□□ -0.37
TTC28-201ENST00000397906 IGBP1P78318 339 aa12.71□□□□□ -0.37
TTC28-201ENST00000397906 RAD50Q92878 1312 aa12.71□□□□□ -0.38
TTC28-201ENST00000397906 KRT83P78385 493 aa12.71□□□□□ -0.38
TTC28-201ENST00000397906 GEN1Q17RS7 908 aa12.71□□□□□ -0.38
TTC28-201ENST00000397906 POLR2DO15514 142 aaKnown RBP12.71□□□□□ -0.38
TTC28-201ENST00000397906 TRPC5Q9UL62 973 aaPredicted RBP12.71□□□□□ -0.38
TTC28-201ENST00000397906 LTKP29376 864 aa12.71□□□□□ -0.38
TTC28-201ENST00000397906 CFAP58Q5T655 872 aa12.71□□□□□ -0.38
TTC28-201ENST00000397906 OTUD7BQ6GQQ9 843 aa12.71□□□□□ -0.38
TTC28-201ENST00000397906 RDH13Q8NBN7 331 aa12.71□□□□□ -0.38
TTC28-201ENST00000397906 SLC5A4Q9NY91 659 aa12.71□□□□□ -0.38
TTC28-201ENST00000397906 NELFCDQ8IXH7 590 aa12.7□□□□□ -0.38
TTC28-201ENST00000397906 PRPF6O94906 941 aaKnown RBP12.7□□□□□ -0.38
TTC28-201ENST00000397906 ZBTB40Q9NUA8 1239 aa12.7□□□□□ -0.38
TTC28-201ENST00000397906 TYRO3Q06418 890 aa12.7□□□□□ -0.38
TTC28-201ENST00000397906 CAVIN2O95810 425 aa12.7□□□□□ -0.38
TTC28-201ENST00000397906 FAM102BQ5T8I3 360 aa12.7□□□□□ -0.38
TTC28-201ENST00000397906 SESTD1Q86VW0 696 aa12.7□□□□□ -0.38
TTC28-201ENST00000397906 ERVV-2B6SEH9 535 aa12.7□□□□□ -0.38
TTC28-201ENST00000397906 CCDC14Q49A88 953 aa12.7□□□□□ -0.38
TTC28-201ENST00000397906 TMEM87BQ96K49 555 aa12.7□□□□□ -0.38
TTC28-201ENST00000397906 TESK2Q96S53 571 aa12.7□□□□□ -0.38
TTC28-201ENST00000397906 PPEF1O14829 653 aaPredicted RBP12.7□□□□□ -0.38
TTC28-201ENST00000397906 SEL1L2Q5TEA6 688 aa12.7□□□□□ -0.38
TTC28-201ENST00000397906 CLSTN2Q9H4D0 955 aa12.7□□□□□ -0.38
TTC28-201ENST00000397906 SPOPO43791 374 aa12.7□□□□□ -0.38
TTC28-201ENST00000397906 Q3C1V9 767 aa12.7□□□□□ -0.38
TTC28-201ENST00000397906 CNNM4Q6P4Q7 775 aa12.7□□□□□ -0.38
TTC28-201ENST00000397906 VPS54Q9P1Q0 977 aa12.7□□□□□ -0.38
TTC28-201ENST00000397906 EXOC7Q9UPT5 735 aa12.7□□□□□ -0.38
TTC28-201ENST00000397906 ANKRD35Q8N283 1001 aa12.7□□□□□ -0.38
TTC28-201ENST00000397906 PHKG2P15735 406 aa12.7□□□□□ -0.38
TTC28-201ENST00000397906 RNASE9P60153 205 aaKnown RBP12.7□□□□□ -0.38
TTC28-201ENST00000397906 MICALCLQ6ZW33 695 aa12.69□□□□□ -0.38
TTC28-201ENST00000397906 DNM3Q9UQ16 869 aa12.69□□□□□ -0.38
TTC28-201ENST00000397906 PPARAQ07869 468 aa12.69□□□□□ -0.38
TTC28-201ENST00000397906 UTP14CQ5TAP6 766 aaKnown RBP12.69□□□□□ -0.38
TTC28-201ENST00000397906 TBC1D22AQ8WUA7 517 aa12.69□□□□□ -0.38
TTC28-201ENST00000397906 FLOT1O75955 427 aa12.69□□□□□ -0.38
TTC28-201ENST00000397906 PPP2R5CQ13362 524 aa12.69□□□□□ -0.38
TTC28-201ENST00000397906 NLRX1Q86UT6 975 aa12.69□□□□□ -0.38
TTC28-201ENST00000397906 TRERF1Q96PN7 1200 aa12.69□□□□□ -0.38
TTC28-201ENST00000397906 LRWD1Q9UFC0 647 aa12.69□□□□□ -0.38
TTC28-201ENST00000397906 MAPKBP1O60336 1514 aa12.69□□□□□ -0.38
TTC28-201ENST00000397906 IBTKQ9P2D0 1353 aaPredicted RBP12.69□□□□□ -0.38
TTC28-201ENST00000397906 NEURL1BA8MQ27 555 aa12.69□□□□□ -0.38
TTC28-201ENST00000397906 TTC38Q5R3I4 469 aa12.69□□□□□ -0.38
TTC28-201ENST00000397906 C6orf163Q5TEZ5 329 aa12.69□□□□□ -0.38
TTC28-201ENST00000397906 LUC7L2Q9Y383 392 aaKnown RBP12.69□□□□□ -0.38
TTC28-201ENST00000397906 USTQ9Y2C2 406 aa12.69□□□□□ -0.38
TTC28-201ENST00000397906 TMEM2Q9UHN6 1383 aa12.69□□□□□ -0.38
TTC28-201ENST00000397906 ZNF772Q68DY9 489 aaPredicted RBP12.69□□□□□ -0.38
TTC28-201ENST00000397906 DBNDD1Q9H9R9 158 aa12.69□□□□□ -0.38
TTC28-201ENST00000397906 ELP1O95163 1332 aa12.69□□□□□ -0.38
TTC28-201ENST00000397906 GOLGA8HP0CJ92 632 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms