RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 NEFLP07196 543 aa26.14■■□□□ 1.78
CLN3-207ENST00000395653 SLURP2P0DP57 97 aa26.14■■□□□ 1.78
CLN3-207ENST00000395653 GJA5P36382 358 aa26.14■■□□□ 1.78
CLN3-207ENST00000395653 TICAM2Q86XR7 235 aa26.14■■□□□ 1.78
CLN3-207ENST00000395653 SDR42E1Q8WUS8 393 aa26.14■■□□□ 1.78
CLN3-207ENST00000395653 OSBP2Q969R2 916 aa26.14■■□□□ 1.78
CLN3-207ENST00000395653 DCP1AQ9NPI6 582 aaPredicted RBP26.14■■□□□ 1.78
CLN3-207ENST00000395653 ATP8A2Q9NTI2 1148 aa26.14■■□□□ 1.78
CLN3-207ENST00000395653 NAV1Q8NEY1 1877 aa26.14■■□□□ 1.78
CLN3-207ENST00000395653 MYH1P12882 1939 aa26.14■■□□□ 1.78
CLN3-207ENST00000395653 MANSC4A6NHS7 340 aaPredicted RBP26.14■■□□□ 1.77
CLN3-207ENST00000395653 SREBF2Q12772 1141 aa26.14■■□□□ 1.77
CLN3-207ENST00000395653 TTC6Q86TZ1 520 aa26.14■■□□□ 1.77
CLN3-207ENST00000395653 FAM196BA6NMK8 535 aa26.13■■□□□ 1.77
CLN3-207ENST00000395653 CA12O43570 354 aa26.13■■□□□ 1.77
CLN3-207ENST00000395653 CTNND1O60716 968 aaKnown RBP26.13■■□□□ 1.77
CLN3-207ENST00000395653 PDE4AP27815 886 aa26.13■■□□□ 1.77
CLN3-207ENST00000395653 TM4SF4P48230 202 aa26.13■■□□□ 1.77
CLN3-207ENST00000395653 CNKSR2Q8WXI2 1034 aa26.13■■□□□ 1.77
CLN3-207ENST00000395653 OTUD5Q96G74 571 aa26.13■■□□□ 1.77
CLN3-207ENST00000395653 INHBEP58166 350 aa26.12■■□□□ 1.77
CLN3-207ENST00000395653 PPATQ06203 517 aa26.12■■□□□ 1.77
CLN3-207ENST00000395653 SCYL3Q8IZE3 742 aa26.12■■□□□ 1.77
CLN3-207ENST00000395653 CRACR2BQ8N4Y2 399 aaPredicted RBP26.12■■□□□ 1.77
CLN3-207ENST00000395653 STRBPQ96SI9 672 aaKnown RBP26.12■■□□□ 1.77
CLN3-207ENST00000395653 EHD4Q9H223 541 aa26.12■■□□□ 1.77
CLN3-207ENST00000395653 PRKAB2O43741 272 aa26.11■■□□□ 1.77
CLN3-207ENST00000395653 PPIL2Q13356 520 aa26.11■■□□□ 1.77
CLN3-207ENST00000395653 ZMYM1Q5SVZ6 1142 aa26.11■■□□□ 1.77
CLN3-207ENST00000395653 TRIM34Q9BYJ4 488 aa26.11■■□□□ 1.77
CLN3-207ENST00000395653 DNAJC18Q9H819 358 aa26.11■■□□□ 1.77
CLN3-207ENST00000395653 MCM9Q9NXL9 1143 aa26.11■■□□□ 1.77
CLN3-207ENST00000395653 SLC4A4Q9Y6R1 1079 aa26.11■■□□□ 1.77
CLN3-207ENST00000395653 TRIM6-TRIM34B2RNG4 842 aa26.1■■□□□ 1.77
CLN3-207ENST00000395653 FOXN1O15353 648 aa26.1■■□□□ 1.77
CLN3-207ENST00000395653 CENPQQ7L2Z9 268 aaPredicted RBP26.1■■□□□ 1.77
CLN3-207ENST00000395653 PICK1Q9NRD5 415 aa26.1■■□□□ 1.77
CLN3-207ENST00000395653 SERPINB13Q9UIV8 391 aa26.1■■□□□ 1.77
CLN3-207ENST00000395653 DOCK1Q14185 1865 aa26.1■■□□□ 1.77
CLN3-207ENST00000395653 M0R2C6 588 aa26.09■■□□□ 1.77
CLN3-207ENST00000395653 GPAA1O43292 621 aa26.09■■□□□ 1.77
CLN3-207ENST00000395653 POLR3DP05423 398 aaPredicted RBP26.09■■□□□ 1.77
CLN3-207ENST00000395653 SLC4A8Q2Y0W8 1093 aa26.09■■□□□ 1.77
CLN3-207ENST00000395653 DDRGK1Q96HY6 314 aa26.09■■□□□ 1.77
CLN3-207ENST00000395653 SAGE1Q9NXZ1 904 aa26.09■■□□□ 1.77
CLN3-207ENST00000395653 PLCD1P51178 756 aa26.08■■□□□ 1.77
CLN3-207ENST00000395653 GTF2A2P52657 109 aa26.08■■□□□ 1.77
CLN3-207ENST00000395653 MS4A4AQ96JQ5 239 aa26.08■■□□□ 1.77
CLN3-207ENST00000395653 TESPA1A2RU30 521 aaPredicted RBP26.07■■□□□ 1.76
CLN3-207ENST00000395653 IRF6O14896 467 aa26.07■■□□□ 1.76
CLN3-207ENST00000395653 GNAT2P19087 354 aa26.07■■□□□ 1.76
CLN3-207ENST00000395653 CAP2P40123 477 aa26.07■■□□□ 1.76
CLN3-207ENST00000395653 CTCFP49711 727 aaPredicted RBP26.07■■□□□ 1.76
CLN3-207ENST00000395653 RILPL2Q969X0 211 aa26.07■■□□□ 1.76
CLN3-207ENST00000395653 SEC62Q99442 399 aaKnown RBP26.07■■□□□ 1.76
CLN3-207ENST00000395653 PTPRAP18433 802 aa26.06■■□□□ 1.76
CLN3-207ENST00000395653 GIMAP6Q6P9H5 292 aa26.06■■□□□ 1.76
CLN3-207ENST00000395653 RNF186Q9NXI6 227 aa26.06■■□□□ 1.76
CLN3-207ENST00000395653 TAOK2Q9UL54 1235 aa26.06■■□□□ 1.76
CLN3-207ENST00000395653 RRP1BQ14684 758 aaKnown RBP26.05■■□□□ 1.76
CLN3-207ENST00000395653 AMOTL1Q8IY63 956 aa26.05■■□□□ 1.76
CLN3-207ENST00000395653 KCNH4Q9UQ05 1017 aa26.05■■□□□ 1.76
CLN3-207ENST00000395653 GSG1L2A8MUP6 293 aa26.05■■□□□ 1.76
CLN3-207ENST00000395653 GABPAQ06546 454 aa26.05■■□□□ 1.76
CLN3-207ENST00000395653 SNAPC2Q13487 334 aa26.05■■□□□ 1.76
CLN3-207ENST00000395653 TATDN1Q6P1N9 297 aa26.05■■□□□ 1.76
CLN3-207ENST00000395653 HELLSQ9NRZ9 838 aa26.05■■□□□ 1.76
CLN3-207ENST00000395653 TRPA1O75762 1119 aa26.04■■□□□ 1.76
CLN3-207ENST00000395653 ALDH1A1P00352 501 aa26.04■■□□□ 1.76
CLN3-207ENST00000395653 HSPA8P11142 646 aaKnown RBP26.04■■□□□ 1.76
CLN3-207ENST00000395653 CETPP11597 493 aa26.04■■□□□ 1.76
CLN3-207ENST00000395653 TTC22Q5TAA0 569 aa26.04■■□□□ 1.76
CLN3-207ENST00000395653 IFNL1Q8IU54 200 aa26.04■■□□□ 1.76
CLN3-207ENST00000395653 GINM1Q9NU53 330 aa26.04■■□□□ 1.76
CLN3-207ENST00000395653 ARPP21Q9UBL0 812 aaPredicted RBP26.04■■□□□ 1.76
CLN3-207ENST00000395653 ZHX2Q9Y6X8 837 aa26.04■■□□□ 1.76
CLN3-207ENST00000395653 ATAD5Q96QE3 1844 aa26.03■■□□□ 1.76
CLN3-207ENST00000395653 CCL15-CCL14A0A0B4J2E2 113 aa26.03■■□□□ 1.76
CLN3-207ENST00000395653 USP17L12C9JPN9 530 aa26.03■■□□□ 1.76
CLN3-207ENST00000395653 USP17L21D6R901 530 aa26.03■■□□□ 1.76
CLN3-207ENST00000395653 ASNSP08243 561 aa26.03■■□□□ 1.76
CLN3-207ENST00000395653 CYP2D6P10635 497 aa26.03■■□□□ 1.76
CLN3-207ENST00000395653 CCL15Q16663 113 aa26.03■■□□□ 1.76
CLN3-207ENST00000395653 C12orf60Q5U649 245 aa26.03■■□□□ 1.76
CLN3-207ENST00000395653 BRI3BPQ8WY22 251 aa26.03■■□□□ 1.76
CLN3-207ENST00000395653 CCDC136Q96JN2 1154 aa26.03■■□□□ 1.76
CLN3-207ENST00000395653 BAZ2AQ9UIF9 1905 aaKnown RBP26.03■■□□□ 1.76
CLN3-207ENST00000395653 IGF2BP3O00425 579 aaKnown RBP eCLIP26.02■■□□□ 1.76
CLN3-207ENST00000395653 CXCL11O14625 94 aa26.02■■□□□ 1.76
CLN3-207ENST00000395653 OTUD7BQ6GQQ9 843 aa26.02■■□□□ 1.76
CLN3-207ENST00000395653 TBC1D2Q9BYX2 928 aa26.02■■□□□ 1.76
CLN3-207ENST00000395653 AFG3L2Q9Y4W6 797 aa26.02■■□□□ 1.76
CLN3-207ENST00000395653 PATL2C9JE40 543 aaKnown RBP26.01■■□□□ 1.75
CLN3-207ENST00000395653 SDSP20132 328 aa26.01■■□□□ 1.75
CLN3-207ENST00000395653 SHMT1P34896 483 aa26.01■■□□□ 1.75
CLN3-207ENST00000395653 EVX2Q03828 476 aa26.01■■□□□ 1.75
CLN3-207ENST00000395653 SBK1Q52WX2 424 aa26.01■■□□□ 1.75
CLN3-207ENST00000395653 CTR9Q6PD62 1173 aa26.01■■□□□ 1.75
CLN3-207ENST00000395653 PTPN18Q99952 460 aa26.01■■□□□ 1.75
CLN3-207ENST00000395653 CFHR5Q9BXR6 569 aa26.01■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 154.4 ms