RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 HSPA4P34932 840 aa8.41□□□□□ -1.06
LIMA1-202ENST00000394943 MOGSQ13724 837 aa8.41□□□□□ -1.06
LIMA1-202ENST00000394943 ARMT1Q9H993 441 aa8.41□□□□□ -1.06
LIMA1-202ENST00000394943 U3KPZ7 1027 aaPredicted RBP8.41□□□□□ -1.06
LIMA1-202ENST00000394943 CTNND1O60716 968 aaKnown RBP8.4□□□□□ -1.06
LIMA1-202ENST00000394943 GUCY1A2P33402 732 aa8.4□□□□□ -1.06
LIMA1-202ENST00000394943 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.4□□□□□ -1.06
LIMA1-202ENST00000394943 SEC62Q99442 399 aaKnown RBP8.4□□□□□ -1.06
LIMA1-202ENST00000394943 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.4□□□□□ -1.06
LIMA1-202ENST00000394943 EVCP57679 992 aa8.4□□□□□ -1.06
LIMA1-202ENST00000394943 ANAPC15P60006 121 aa8.4□□□□□ -1.06
LIMA1-202ENST00000394943 SLFNL1Q499Z3 407 aa8.4□□□□□ -1.06
LIMA1-202ENST00000394943 NOM1Q5C9Z4 860 aaKnown RBP8.4□□□□□ -1.06
LIMA1-202ENST00000394943 TTC6Q86TZ1 520 aa8.4□□□□□ -1.06
LIMA1-202ENST00000394943 AIDAQ96BJ3 306 aa8.4□□□□□ -1.06
LIMA1-202ENST00000394943 ZNF341Q9BYN7 854 aa8.4□□□□□ -1.06
LIMA1-202ENST00000394943 JAG2Q9Y219 1238 aa8.4□□□□□ -1.06
LIMA1-202ENST00000394943 RBM25P49756 843 aaKnown RBP8.4□□□□□ -1.07
LIMA1-202ENST00000394943 DCAF15Q66K64 600 aa8.4□□□□□ -1.07
LIMA1-202ENST00000394943 CCDC17Q96LX7 622 aa8.4□□□□□ -1.07
LIMA1-202ENST00000394943 USP26Q9BXU7 913 aa8.4□□□□□ -1.07
LIMA1-202ENST00000394943 TM6SF1Q9BZW5 370 aa8.4□□□□□ -1.07
LIMA1-202ENST00000394943 MAF1Q9H063 256 aa8.4□□□□□ -1.07
LIMA1-202ENST00000394943 PLXNB2O15031 1838 aa8.39□□□□□ -1.07
LIMA1-202ENST00000394943 PLA2G6O60733 806 aa8.39□□□□□ -1.07
LIMA1-202ENST00000394943 FGAP02671 866 aa8.39□□□□□ -1.07
LIMA1-202ENST00000394943 APLP1P51693 650 aa8.39□□□□□ -1.07
LIMA1-202ENST00000394943 NOL10Q9BSC4 688 aaKnown RBP8.39□□□□□ -1.07
LIMA1-202ENST00000394943 TMOD2Q9NZR1 351 aa8.39□□□□□ -1.07
LIMA1-202ENST00000394943 GTF3C3Q9Y5Q9 886 aa8.39□□□□□ -1.07
LIMA1-202ENST00000394943 SNCAIPQ9Y6H5 919 aa8.39□□□□□ -1.07
LIMA1-202ENST00000394943 ADGRA2Q96PE1 1338 aa8.39□□□□□ -1.07
LIMA1-202ENST00000394943 ADM5C9JUS6 153 aa8.39□□□□□ -1.07
LIMA1-202ENST00000394943 PRKAB2O43741 272 aa8.39□□□□□ -1.07
LIMA1-202ENST00000394943 ZBTB48P10074 688 aaPredicted RBP8.39□□□□□ -1.07
LIMA1-202ENST00000394943 RRP1BQ14684 758 aaKnown RBP8.39□□□□□ -1.07
LIMA1-202ENST00000394943 VPS53Q5VIR6 699 aa8.39□□□□□ -1.07
LIMA1-202ENST00000394943 KRT26Q7Z3Y9 468 aa8.39□□□□□ -1.07
LIMA1-202ENST00000394943 MAP3K14Q99558 947 aa8.39□□□□□ -1.07
LIMA1-202ENST00000394943 CTNNA3Q9UI47 895 aa8.39□□□□□ -1.07
LIMA1-202ENST00000394943 PALD1Q9ULE6 856 aa8.39□□□□□ -1.07
LIMA1-202ENST00000394943 SLC4A4Q9Y6R1 1079 aa8.39□□□□□ -1.07
LIMA1-202ENST00000394943 LRRC37A2A6NM11 1700 aa8.39□□□□□ -1.07
LIMA1-202ENST00000394943 SPDYE5A6NIY4 337 aa8.39□□□□□ -1.07
LIMA1-202ENST00000394943 SLC10A3P09131 477 aa8.39□□□□□ -1.07
LIMA1-202ENST00000394943 RCAN1P53805 252 aa8.39□□□□□ -1.07
LIMA1-202ENST00000394943 PTH1RQ03431 593 aa8.39□□□□□ -1.07
LIMA1-202ENST00000394943 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.39□□□□□ -1.07
LIMA1-202ENST00000394943 TGFBRAP1Q8WUH2 860 aa8.39□□□□□ -1.07
LIMA1-202ENST00000394943 TMEM39BQ9GZU3 492 aa8.39□□□□□ -1.07
LIMA1-202ENST00000394943 MGAMO43451 1857 aa8.38□□□□□ -1.07
LIMA1-202ENST00000394943 CAP2P40123 477 aa8.38□□□□□ -1.07
LIMA1-202ENST00000394943 PLCD1P51178 756 aa8.38□□□□□ -1.07
LIMA1-202ENST00000394943 PPARAQ07869 468 aa8.38□□□□□ -1.07
LIMA1-202ENST00000394943 PPP4R3BQ5MIZ7 849 aa8.38□□□□□ -1.07
LIMA1-202ENST00000394943 LBX2Q6XYB7 198 aa8.38□□□□□ -1.07
LIMA1-202ENST00000394943 SAPCD2Q86UD0 394 aa8.38□□□□□ -1.07
LIMA1-202ENST00000394943 SULF1Q8IWU6 871 aa8.38□□□□□ -1.07
LIMA1-202ENST00000394943 DIAPH3Q9NSV4 1193 aa8.38□□□□□ -1.07
LIMA1-202ENST00000394943 IRF6O14896 467 aa8.38□□□□□ -1.07
LIMA1-202ENST00000394943 RASA1P20936 1047 aa8.38□□□□□ -1.07
LIMA1-202ENST00000394943 NBPF12Q5TAG4 269 aaPredicted RBP8.38□□□□□ -1.07
LIMA1-202ENST00000394943 USP48Q86UV5 1035 aa8.38□□□□□ -1.07
LIMA1-202ENST00000394943 SIAH1Q8IUQ4 282 aa8.38□□□□□ -1.07
LIMA1-202ENST00000394943 NEDD1Q8NHV4 660 aa8.38□□□□□ -1.07
LIMA1-202ENST00000394943 GLIS2Q9BZE0 524 aaPredicted RBP8.38□□□□□ -1.07
LIMA1-202ENST00000394943 F8W031 263 aaPredicted RBP8.38□□□□□ -1.07
LIMA1-202ENST00000394943 EXOSC10Q01780 885 aaKnown RBP8.38□□□□□ -1.07
LIMA1-202ENST00000394943 PPATQ06203 517 aa8.38□□□□□ -1.07
LIMA1-202ENST00000394943 PPIL2Q13356 520 aa8.38□□□□□ -1.07
LIMA1-202ENST00000394943 RCSD1Q6JBY9 416 aa8.38□□□□□ -1.07
LIMA1-202ENST00000394943 SCYL3Q8IZE3 742 aa8.38□□□□□ -1.07
LIMA1-202ENST00000394943 NACAP1Q9BZK3 213 aa8.38□□□□□ -1.07
LIMA1-202ENST00000394943 SERPINB13Q9UIV8 391 aa8.38□□□□□ -1.07
LIMA1-202ENST00000394943 AFG3L2Q9Y4W6 797 aa8.38□□□□□ -1.07
LIMA1-202ENST00000394943 TMEM88BA6NKF7 163 aa8.37□□□□□ -1.07
LIMA1-202ENST00000394943 SNHG28P0DPA3 235 aa8.37□□□□□ -1.07
LIMA1-202ENST00000394943 CDAN1Q8IWY9 1227 aa8.37□□□□□ -1.07
LIMA1-202ENST00000394943 MB21D2Q8IYB1 491 aaPredicted RBP8.37□□□□□ -1.07
LIMA1-202ENST00000394943 MIGA1Q8NAN2 632 aa8.37□□□□□ -1.07
LIMA1-202ENST00000394943 NYAP2Q9P242 653 aa8.37□□□□□ -1.07
LIMA1-202ENST00000394943 TRIM6-TRIM34B2RNG4 842 aa8.37□□□□□ -1.07
LIMA1-202ENST00000394943 TM4SF4P48230 202 aa8.37□□□□□ -1.07
LIMA1-202ENST00000394943 MAP3K9P80192 1104 aa8.37□□□□□ -1.07
LIMA1-202ENST00000394943 CCDC178Q5BJE1 867 aa8.37□□□□□ -1.07
LIMA1-202ENST00000394943 SKAP1Q86WV1 359 aa8.37□□□□□ -1.07
LIMA1-202ENST00000394943 RASAL3Q86YV0 1011 aa8.37□□□□□ -1.07
LIMA1-202ENST00000394943 RGS22Q8NE09 1264 aa8.37□□□□□ -1.07
LIMA1-202ENST00000394943 GMCL1P1Q8NEA9 526 aa8.37□□□□□ -1.07
LIMA1-202ENST00000394943 RILPL2Q969X0 211 aa8.37□□□□□ -1.07
LIMA1-202ENST00000394943 TTC14Q96N46 770 aa8.37□□□□□ -1.07
LIMA1-202ENST00000394943 HLA-DOAP06340 250 aa8.36□□□□□ -1.07
LIMA1-202ENST00000394943 CDK8P49336 464 aa8.36□□□□□ -1.07
LIMA1-202ENST00000394943 CCDC129Q6ZRS4 1044 aa8.36□□□□□ -1.07
LIMA1-202ENST00000394943 ANKRD13AQ8IZ07 590 aa8.36□□□□□ -1.07
LIMA1-202ENST00000394943 DNAJC5GQ8N7S2 189 aa8.36□□□□□ -1.07
LIMA1-202ENST00000394943 JMYQ8N9B5 988 aa8.36□□□□□ -1.07
LIMA1-202ENST00000394943 SDR42E1Q8WUS8 393 aa8.36□□□□□ -1.07
LIMA1-202ENST00000394943 GBA2Q9HCG7 927 aaPredicted RBP8.36□□□□□ -1.07
LIMA1-202ENST00000394943 GOLGB1Q14789 3259 aaKnown RBP8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms