RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 CATIPQ7Z7H3 387 aa12.9□□□□□ -0.35
TCOF1-203ENST00000394269 SGMS1Q86VZ5 419 aa12.9□□□□□ -0.35
TCOF1-203ENST00000394269 MRPS27Q92552 414 aaKnown RBP12.9□□□□□ -0.35
TCOF1-203ENST00000394269 TRIM5Q9C035 493 aa12.9□□□□□ -0.35
TCOF1-203ENST00000394269 VPS54Q9P1Q0 977 aa12.9□□□□□ -0.35
TCOF1-203ENST00000394269 ZNF804AQ7Z570 1209 aa12.89□□□□□ -0.35
TCOF1-203ENST00000394269 DIS3L2Q8IYB7 885 aaKnown RBP12.89□□□□□ -0.35
TCOF1-203ENST00000394269 SH3RF3Q8TEJ3 882 aaPredicted RBP12.89□□□□□ -0.35
TCOF1-203ENST00000394269 CBX8Q9HC52 389 aa12.89□□□□□ -0.35
TCOF1-203ENST00000394269 BECN2A8MW95 431 aa12.89□□□□□ -0.35
TCOF1-203ENST00000394269 SLC44A5Q8NCS7 719 aa12.89□□□□□ -0.35
TCOF1-203ENST00000394269 PDLIM2Q96JY6 352 aa12.89□□□□□ -0.35
TCOF1-203ENST00000394269 FUCA2Q9BTY2 467 aa12.89□□□□□ -0.35
TCOF1-203ENST00000394269 RTEL1Q9NZ71 1219 aa12.89□□□□□ -0.35
TCOF1-203ENST00000394269 GGA1Q9UJY5 639 aa12.89□□□□□ -0.35
TCOF1-203ENST00000394269 XDHP47989 1333 aa12.89□□□□□ -0.35
TCOF1-203ENST00000394269 AP5Z1O43299 807 aa12.88□□□□□ -0.35
TCOF1-203ENST00000394269 PLEKHA8P1O95397 391 aa12.88□□□□□ -0.35
TCOF1-203ENST00000394269 FAM160A1Q05DH4 1040 aa12.88□□□□□ -0.35
TCOF1-203ENST00000394269 BRAPQ7Z569 592 aa12.88□□□□□ -0.35
TCOF1-203ENST00000394269 FAM200AQ8TCP9 573 aa12.88□□□□□ -0.35
TCOF1-203ENST00000394269 CCDC39Q9UFE4 941 aa12.88□□□□□ -0.35
TCOF1-203ENST00000394269 ATRNO75882 1429 aa12.88□□□□□ -0.35
TCOF1-203ENST00000394269 ANKRD36CQ5JPF3 1778 aa12.88□□□□□ -0.35
TCOF1-203ENST00000394269 WDR19Q8NEZ3 1342 aa12.88□□□□□ -0.35
TCOF1-203ENST00000394269 CLCN1P35523 988 aa12.88□□□□□ -0.35
TCOF1-203ENST00000394269 EN1Q05925 392 aaPredicted RBP12.88□□□□□ -0.35
TCOF1-203ENST00000394269 DDR1Q08345 913 aa12.88□□□□□ -0.35
TCOF1-203ENST00000394269 PROM2Q8N271 834 aa12.88□□□□□ -0.35
TCOF1-203ENST00000394269 TMTC2Q8N394 836 aa12.88□□□□□ -0.35
TCOF1-203ENST00000394269 RBM17Q96I25 401 aaKnown RBP12.88□□□□□ -0.35
TCOF1-203ENST00000394269 STX8Q9UNK0 236 aa12.88□□□□□ -0.35
TCOF1-203ENST00000394269 CCDC196A0A1B0GTZ2 297 aa12.88□□□□□ -0.35
TCOF1-203ENST00000394269 GOLGA6L19H0YKK7 550 aa12.88□□□□□ -0.35
TCOF1-203ENST00000394269 DNTTIP2Q5QJE6 756 aaKnown RBP12.88□□□□□ -0.35
TCOF1-203ENST00000394269 SPTY2D1Q68D10 685 aaPredicted RBP12.88□□□□□ -0.35
TCOF1-203ENST00000394269 C17orf53Q8N3J3 647 aaPredicted RBP12.88□□□□□ -0.35
TCOF1-203ENST00000394269 KCNG4Q8TDN1 519 aa12.88□□□□□ -0.35
TCOF1-203ENST00000394269 OXER1Q8TDS5 423 aa12.88□□□□□ -0.35
TCOF1-203ENST00000394269 ZNF622Q969S3 477 aaKnown RBP eCLIP12.88□□□□□ -0.351e-6■■□□□ 12.2
TCOF1-203ENST00000394269 CABP5Q9NP86 173 aa12.88□□□□□ -0.35
TCOF1-203ENST00000394269 SLC3A2P08195 630 aaKnown RBP12.87□□□□□ -0.35
TCOF1-203ENST00000394269 GTF2IP78347 998 aa12.87□□□□□ -0.35
TCOF1-203ENST00000394269 TFAP4Q01664 338 aa12.87□□□□□ -0.35
TCOF1-203ENST00000394269 MFSD14BQ5SR56 506 aa12.87□□□□□ -0.35
TCOF1-203ENST00000394269 CRACR2BQ8N4Y2 399 aaPredicted RBP12.87□□□□□ -0.35
TCOF1-203ENST00000394269 PDILTQ8N807 584 aa12.87□□□□□ -0.35
TCOF1-203ENST00000394269 FBXO41Q8TF61 875 aa12.87□□□□□ -0.35
TCOF1-203ENST00000394269 WDHD1O75717 1129 aaPredicted RBP12.87□□□□□ -0.35
TCOF1-203ENST00000394269 PDE4BQ07343 736 aa12.87□□□□□ -0.35
TCOF1-203ENST00000394269 SNW1Q13573 536 aaKnown RBP12.87□□□□□ -0.35
TCOF1-203ENST00000394269 DOK7Q18PE1 504 aa12.87□□□□□ -0.35
TCOF1-203ENST00000394269 ADALQ6DHV7 355 aa12.87□□□□□ -0.35
TCOF1-203ENST00000394269 WDR66Q8TBY9 1149 aa12.87□□□□□ -0.35
TCOF1-203ENST00000394269 LEMD3Q9Y2U8 911 aa12.87□□□□□ -0.35
TCOF1-203ENST00000394269 SPEF2Q9C093 1822 aa12.87□□□□□ -0.35
TCOF1-203ENST00000394269 SEMA3EO15041 775 aa12.87□□□□□ -0.35
TCOF1-203ENST00000394269 IFNAR1P17181 557 aa12.87□□□□□ -0.35
TCOF1-203ENST00000394269 PICALMQ13492 652 aa12.87□□□□□ -0.35
TCOF1-203ENST00000394269 UVSSAQ2YD98 709 aa12.87□□□□□ -0.35
TCOF1-203ENST00000394269 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.87□□□□□ -0.35
TCOF1-203ENST00000394269 CD209Q9NNX6 404 aa12.87□□□□□ -0.35
TCOF1-203ENST00000394269 POLLQ9UGP5 575 aa12.87□□□□□ -0.35
TCOF1-203ENST00000394269 FMNL1O95466 1100 aaPredicted RBP12.86□□□□□ -0.35
TCOF1-203ENST00000394269 C11orf57Q6ZUT1 292 aaPredicted RBP12.86□□□□□ -0.35
TCOF1-203ENST00000394269 MXD3Q9BW11 206 aa12.86□□□□□ -0.35
TCOF1-203ENST00000394269 BRIP1Q9BX63 1249 aa12.86□□□□□ -0.35
TCOF1-203ENST00000394269 NWD2Q9ULI1 1742 aa12.86□□□□□ -0.35
TCOF1-203ENST00000394269 USP17L3A6NCW0 530 aa12.86□□□□□ -0.35
TCOF1-203ENST00000394269 USP17L4A6NCW7 530 aa12.86□□□□□ -0.35
TCOF1-203ENST00000394269 ONECUT3O60422 494 aaPredicted RBP12.86□□□□□ -0.35
TCOF1-203ENST00000394269 ZNF202O95125 648 aa12.86□□□□□ -0.35
TCOF1-203ENST00000394269 BAG3O95817 575 aa12.86□□□□□ -0.35
TCOF1-203ENST00000394269 USP17L1Q7RTZ2 530 aa12.86□□□□□ -0.35
TCOF1-203ENST00000394269 CTCFLQ8NI51 663 aaPredicted RBP12.86□□□□□ -0.35
TCOF1-203ENST00000394269 WASF1Q92558 559 aa12.86□□□□□ -0.35
TCOF1-203ENST00000394269 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.86□□□□□ -0.35
TCOF1-203ENST00000394269 AMOTL1Q8IY63 956 aa12.85□□□□□ -0.35
TCOF1-203ENST00000394269 LAMA4Q16363 1823 aa12.85□□□□□ -0.35
TCOF1-203ENST00000394269 FAM205CA6NFA0 338 aa12.85□□□□□ -0.35
TCOF1-203ENST00000394269 ZNF444Q8N0Y2 327 aaPredicted RBP12.85□□□□□ -0.35
TCOF1-203ENST00000394269 POLR3EQ9NVU0 708 aa12.85□□□□□ -0.35
TCOF1-203ENST00000394269 DEXIO95424 95 aa12.85□□□□□ -0.35
TCOF1-203ENST00000394269 PFKFB1P16118 471 aa12.85□□□□□ -0.35
TCOF1-203ENST00000394269 BTDP43251 543 aa12.85□□□□□ -0.35
TCOF1-203ENST00000394269 PLCD1P51178 756 aa12.85□□□□□ -0.35
TCOF1-203ENST00000394269 ATL3Q6DD88 541 aa12.85□□□□□ -0.35
TCOF1-203ENST00000394269 NOSTRINQ8IVI9 506 aa12.85□□□□□ -0.35
TCOF1-203ENST00000394269 ATP8A2Q9NTI2 1148 aa12.85□□□□□ -0.35
TCOF1-203ENST00000394269 NOL7Q9UMY1 257 aaKnown RBP12.85□□□□□ -0.35
TCOF1-203ENST00000394269 RAD21O60216 631 aa12.84□□□□□ -0.35
TCOF1-203ENST00000394269 TSPY3P0CV98 308 aa12.84□□□□□ -0.35
TCOF1-203ENST00000394269 TSPY8P0CW00 308 aa12.84□□□□□ -0.35
TCOF1-203ENST00000394269 ADRA2BP18089 450 aa12.84□□□□□ -0.35
TCOF1-203ENST00000394269 SYKP43405 635 aa12.84□□□□□ -0.35
TCOF1-203ENST00000394269 SEC23AQ15436 765 aa12.84□□□□□ -0.35
TCOF1-203ENST00000394269 TDRD7Q8NHU6 1098 aaKnown RBP12.84□□□□□ -0.35
TCOF1-203ENST00000394269 SCNN1DP51172 638 aa12.84□□□□□ -0.35
TCOF1-203ENST00000394269 KIAA2012Q0VF49 1180 aa12.84□□□□□ -0.35
TCOF1-203ENST00000394269 SLC39A14Q15043 492 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms