RNA–Protein interactions for RNA: ENST00000376659.9

TRIM39-202, Transcript of tripartite motif containing 39, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM39, Length 3,535 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-202ENST00000376659 ME1P48163 572 aa11.13□□□□□ -0.63
TRIM39-202ENST00000376659 ARMCX5Q6P1M9 558 aa11.13□□□□□ -0.63
TRIM39-202ENST00000376659 TMEM139Q8IV31 216 aa11.13□□□□□ -0.63
TRIM39-202ENST00000376659 CRACR2BQ8N4Y2 399 aaPredicted RBP11.13□□□□□ -0.63
TRIM39-202ENST00000376659 AOPEPQ8N6M6 819 aa11.13□□□□□ -0.63
TRIM39-202ENST00000376659 CNNM2Q9H8M5 875 aa11.13□□□□□ -0.63
TRIM39-202ENST00000376659 ANO10Q9NW15 660 aa11.13□□□□□ -0.63
TRIM39-202ENST00000376659 ZBTB43O43298 467 aa11.13□□□□□ -0.63
TRIM39-202ENST00000376659 KCNJ6P48051 423 aa11.13□□□□□ -0.63
TRIM39-202ENST00000376659 RALYLQ86SE5 291 aaKnown RBP11.13□□□□□ -0.63
TRIM39-202ENST00000376659 RBBP6Q7Z6E9 1792 aaKnown RBP11.13□□□□□ -0.63
TRIM39-202ENST00000376659 EARS2Q5JPH6 523 aaKnown RBP11.13□□□□□ -0.63
TRIM39-202ENST00000376659 AIDAQ96BJ3 306 aa11.13□□□□□ -0.63
TRIM39-202ENST00000376659 ACSBG1Q96GR2 724 aa11.13□□□□□ -0.63
TRIM39-202ENST00000376659 FAM84BQ96KN1 310 aaPredicted RBP11.13□□□□□ -0.63
TRIM39-202ENST00000376659 BRIP1Q9BX63 1249 aa11.13□□□□□ -0.63
TRIM39-202ENST00000376659 MINPP1Q9UNW1 487 aa11.13□□□□□ -0.63
TRIM39-202ENST00000376659 SNED1Q8TER0 1413 aa11.12□□□□□ -0.63
TRIM39-202ENST00000376659 ADAMTS3O15072 1205 aa11.12□□□□□ -0.63
TRIM39-202ENST00000376659 PTMAP06454 111 aaKnown RBP11.12□□□□□ -0.63
TRIM39-202ENST00000376659 PPARAQ07869 468 aa11.12□□□□□ -0.63
TRIM39-202ENST00000376659 NOSTRINQ8IVI9 506 aa11.12□□□□□ -0.63
TRIM39-202ENST00000376659 PHF20Q9BVI0 1012 aa11.12□□□□□ -0.63
TRIM39-202ENST00000376659 FOXP1Q9H334 677 aaPredicted RBP11.12□□□□□ -0.63
TRIM39-202ENST00000376659 ACTN4O43707 911 aaKnown RBP11.12□□□□□ -0.63
TRIM39-202ENST00000376659 PDE4BQ07343 736 aa11.12□□□□□ -0.63
TRIM39-202ENST00000376659 TBC1D9BQ66K14 1250 aa11.12□□□□□ -0.63
TRIM39-202ENST00000376659 CCDC73Q6ZRK6 1079 aa11.12□□□□□ -0.63
TRIM39-202ENST00000376659 KRT23Q9C075 422 aa11.12□□□□□ -0.63
TRIM39-202ENST00000376659 ATAD5Q96QE3 1844 aa11.12□□□□□ -0.63
TRIM39-202ENST00000376659 A0A087X0B3 334 aa11.12□□□□□ -0.63
TRIM39-202ENST00000376659 RIOK3O14730 519 aaKnown RBP11.12□□□□□ -0.63
TRIM39-202ENST00000376659 KINO60870 393 aaKnown RBP11.12□□□□□ -0.63
TRIM39-202ENST00000376659 MAP3K12Q12852 859 aa11.12□□□□□ -0.63
TRIM39-202ENST00000376659 TMEM67Q5HYA8 995 aa11.12□□□□□ -0.63
TRIM39-202ENST00000376659 APTXQ7Z2E3 356 aaKnown RBP11.12□□□□□ -0.63
TRIM39-202ENST00000376659 MICU3Q86XE3 530 aa11.12□□□□□ -0.63
TRIM39-202ENST00000376659 DHX37Q8IY37 1157 aaKnown RBP11.12□□□□□ -0.63
TRIM39-202ENST00000376659 ENAHQ8N8S7 591 aaPredicted RBP11.12□□□□□ -0.63
TRIM39-202ENST00000376659 TSC1Q92574 1164 aa11.12□□□□□ -0.63
TRIM39-202ENST00000376659 CLIC6Q96NY7 704 aa11.12□□□□□ -0.63
TRIM39-202ENST00000376659 NIP7Q9Y221 180 aaKnown RBP eCLIP11.12□□□□□ -0.63
TRIM39-202ENST00000376659 CNTNAP5Q8WYK1 1306 aa11.11□□□□□ -0.63
TRIM39-202ENST00000376659 GOLGA6L4A6NEF3 574 aa11.11□□□□□ -0.63
TRIM39-202ENST00000376659 CDKL5O76039 1030 aa11.11□□□□□ -0.63
TRIM39-202ENST00000376659 UBE4AQ14139 1066 aa11.11□□□□□ -0.63
TRIM39-202ENST00000376659 SH3RF1Q7Z6J0 888 aa11.11□□□□□ -0.63
TRIM39-202ENST00000376659 PSME4Q14997 1843 aa11.11□□□□□ -0.63
TRIM39-202ENST00000376659 ZNF18P17022 549 aa11.11□□□□□ -0.63
TRIM39-202ENST00000376659 TROAPQ12815 778 aa11.11□□□□□ -0.63
TRIM39-202ENST00000376659 TBX2Q13207 712 aaPredicted RBP11.11□□□□□ -0.63
TRIM39-202ENST00000376659 SYCP1Q15431 976 aa11.11□□□□□ -0.63
TRIM39-202ENST00000376659 LONRF3Q496Y0 759 aa11.11□□□□□ -0.63
TRIM39-202ENST00000376659 ZNF579Q8NAF0 562 aaKnown RBP11.11□□□□□ -0.63
TRIM39-202ENST00000376659 OXER1Q8TDS5 423 aa11.11□□□□□ -0.63
TRIM39-202ENST00000376659 CELF1Q92879 486 aaKnown RBP11.11□□□□□ -0.63
TRIM39-202ENST00000376659 NSUN4Q96CB9 384 aaKnown RBP11.11□□□□□ -0.63
TRIM39-202ENST00000376659 GOLGA8AA7E2F4 631 aa11.1□□□□□ -0.63
TRIM39-202ENST00000376659 M0R2N6 131 aa11.1□□□□□ -0.63
TRIM39-202ENST00000376659 FOXN1O15353 648 aa11.1□□□□□ -0.63
TRIM39-202ENST00000376659 CUTAO60888 179 aa11.1□□□□□ -0.63
TRIM39-202ENST00000376659 PTPREP23469 700 aa11.1□□□□□ -0.63
TRIM39-202ENST00000376659 RC3H1Q5TC82 1133 aaKnown RBP11.1□□□□□ -0.63
TRIM39-202ENST00000376659 CTR9Q6PD62 1173 aa11.1□□□□□ -0.63
TRIM39-202ENST00000376659 IMPACTQ9P2X3 320 aa11.1□□□□□ -0.63
TRIM39-202ENST00000376659 C10orf71Q711Q0 1435 aa11.1□□□□□ -0.63
TRIM39-202ENST00000376659 GYG1P46976 350 aa11.1□□□□□ -0.63
TRIM39-202ENST00000376659 PRDM4Q9UKN5 801 aa11.1□□□□□ -0.63
TRIM39-202ENST00000376659 SLC4A4Q9Y6R1 1079 aa11.1□□□□□ -0.63
TRIM39-202ENST00000376659 RGPD3A6NKT7 1758 aaPredicted RBP11.1□□□□□ -0.63
TRIM39-202ENST00000376659 RGPD4Q7Z3J3 1758 aa11.1□□□□□ -0.63
TRIM39-202ENST00000376659 GOLGA6L6A8MZA4 724 aa11.1□□□□□ -0.63
TRIM39-202ENST00000376659 E4F1Q66K89 784 aaPredicted RBP11.1□□□□□ -0.63
TRIM39-202ENST00000376659 SDR42E1Q8WUS8 393 aa11.1□□□□□ -0.63
TRIM39-202ENST00000376659 DPF2Q92785 391 aa11.1□□□□□ -0.63
TRIM39-202ENST00000376659 TRIM5Q9C035 493 aa11.1□□□□□ -0.63
TRIM39-202ENST00000376659 NAPBQ9H115 298 aa11.1□□□□□ -0.63
TRIM39-202ENST00000376659 PRR29P0C7W0 189 aa11.09□□□□□ -0.63
TRIM39-202ENST00000376659 STK38Q15208 465 aa11.09□□□□□ -0.63
TRIM39-202ENST00000376659 VPS72Q15906 364 aa11.09□□□□□ -0.63
TRIM39-202ENST00000376659 SLC35G1Q2M3R5 365 aa11.09□□□□□ -0.63
TRIM39-202ENST00000376659 KRBA2Q6ZNG9 492 aa11.09□□□□□ -0.63
TRIM39-202ENST00000376659 ZNF654Q8IZM8 581 aa11.09□□□□□ -0.63
TRIM39-202ENST00000376659 CDC5LQ99459 802 aaKnown RBP11.09□□□□□ -0.63
TRIM39-202ENST00000376659 MYH7BA7E2Y1 1941 aa11.09□□□□□ -0.63
TRIM39-202ENST00000376659 MARCKSP29966 332 aaPredicted RBP11.09□□□□□ -0.63
TRIM39-202ENST00000376659 DYNLL1P63167 89 aaKnown RBP11.09□□□□□ -0.63
TRIM39-202ENST00000376659 NCBP1Q09161 790 aaKnown RBP11.09□□□□□ -0.63
TRIM39-202ENST00000376659 PNOCQ13519 176 aa11.09□□□□□ -0.63
TRIM39-202ENST00000376659 CEP57L1Q8IYX8 460 aa11.09□□□□□ -0.63
TRIM39-202ENST00000376659 SYTL4Q96C24 671 aaPredicted RBP11.09□□□□□ -0.63
TRIM39-202ENST00000376659 TNKSO95271 1327 aa11.09□□□□□ -0.63
TRIM39-202ENST00000376659 FAM205CA6NFA0 338 aa11.09□□□□□ -0.63
TRIM39-202ENST00000376659 BTBD18B2RXH4 712 aa11.09□□□□□ -0.63
TRIM39-202ENST00000376659 ORC4O43929 436 aa11.09□□□□□ -0.63
TRIM39-202ENST00000376659 IARSP41252 1262 aaKnown RBP11.09□□□□□ -0.63
TRIM39-202ENST00000376659 MORC3Q14149 939 aa11.09□□□□□ -0.63
TRIM39-202ENST00000376659 RCSD1Q6JBY9 416 aa11.09□□□□□ -0.63
TRIM39-202ENST00000376659 SMIM5Q71RC9 77 aa11.09□□□□□ -0.63
TRIM39-202ENST00000376659 MIGA1Q8NAN2 632 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms