RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 VPS18Q9P253 973 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 CAPN9O14815 690 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 KCNA1Q09470 495 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 DNAJC21Q5F1R6 531 aaKnown RBP5.14□□□□□ -1.59
SCN1A-202ENST00000375405 RASEFQ8IZ41 740 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 EXD1Q8NHP7 514 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 ZNF653Q96CK0 615 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 EPAS1Q99814 870 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 HPS4Q9NQG7 708 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 TMOD4Q9NZQ9 345 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 TRPC4Q9UBN4 977 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 LRFN2Q9ULH4 789 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 TMEM247A6NEH6 219 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 NEMP1O14524 444 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 STARD3NLO95772 234 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 ARF4P18085 180 aaPredicted RBP5.14□□□□□ -1.59
SCN1A-202ENST00000375405 SF3A3Q12874 501 aaKnown RBP eCLIP5.14□□□□□ -1.592e-17■■■■■ 37.8
SCN1A-202ENST00000375405 CCDC62Q6P9F0 684 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 MPRIPQ6WCQ1 1025 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 CHST3Q7LGC8 479 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 APPL2Q8NEU8 664 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 CDC5LQ99459 802 aaKnown RBP5.14□□□□□ -1.59
SCN1A-202ENST00000375405 GDPD2Q9HCC8 539 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 CHCHD3Q9NX63 227 aaKnown RBP5.14□□□□□ -1.59
SCN1A-202ENST00000375405 CABP1Q9NZU7 370 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 DBNLQ9UJU6 430 aaKnown RBP5.14□□□□□ -1.59
SCN1A-202ENST00000375405 SPEF1Q9Y4P9 236 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 AKNAQ7Z591 1439 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 DCTN3O75935 186 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 CAPN1P07384 714 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 PTPN9P43378 593 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 ANKRD1Q15327 319 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 TTC23Q5W5X9 447 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 KSR1Q8IVT5 923 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 ST13P5Q8NFI4 369 aaPredicted RBP5.14□□□□□ -1.59
SCN1A-202ENST00000375405 TEKT1Q969V4 418 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 CDCA7LQ96GN5 454 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 KLHL25Q9H0H3 589 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 ARHGEF3Q9NR81 526 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 DDX19BQ9UMR2 479 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 GPRASP1Q5JY77 1395 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 SMCO2A6NFE2 343 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 E9PMD0 336 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 MTHFSP49914 203 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 SLC44A4Q53GD3 710 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 MFSD4BQ5TF39 518 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 SERBP1Q8NC51 408 aaKnown RBP eCLIP5.14□□□□□ -1.59
SCN1A-202ENST00000375405 MCUQ8NE86 351 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 MCUR1Q96AQ8 359 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 FHDC1Q9C0D6 1143 aaPredicted RBP5.14□□□□□ -1.59
SCN1A-202ENST00000375405 AKAP2Q9Y2D5 859 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 USH1CQ9Y6N9 552 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 TSPY2A6NKD2 308 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 GSTA4O15217 222 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 OPHN1O60890 802 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 PTGS1P23219 599 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 FYB2Q5VWT5 728 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 METTL13Q8N6R0 699 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 C1orf131Q8NDD1 294 aaKnown RBP5.14□□□□□ -1.59
SCN1A-202ENST00000375405 SLC24A3Q9HC58 644 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 G3BP2Q9UN86 482 aaKnown RBP5.14□□□□□ -1.59
SCN1A-202ENST00000375405 ZEB2O60315 1214 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 CCNB2O95067 398 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 MAP3K11Q16584 847 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 ELMSAN1Q6PJG2 1045 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 SESTD1Q86VW0 696 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 ZNF496Q96IT1 587 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-202ENST00000375405 TTC25Q96NG3 672 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 STX8Q9UNK0 236 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 CCDC7Q96M83 1385 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 ANO4Q32M45 955 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 CCDC93Q567U6 631 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 NOSTRINQ8IVI9 506 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 C18orf25Q96B23 403 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-202ENST00000375405 PIDD1Q9HB75 910 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 C6orf50Q9HD87 102 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 PRDM11Q9NQV5 511 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 ABT1Q9ULW3 272 aaKnown RBP5.13□□□□□ -1.59
SCN1A-202ENST00000375405 MAGED2Q9UNF1 606 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-202ENST00000375405 KIF27Q86VH2 1401 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 SYNJ2BP-COX16A0A087WUM0 186 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 PALM2-AKAP2B1ALY0 433 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-202ENST00000375405 PRDM1O75626 825 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 RNASELQ05823 741 aaKnown RBP5.13□□□□□ -1.59
SCN1A-202ENST00000375405 Q3C1V9 767 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 WDR44Q5JSH3 913 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 RSBN1LQ6PCB5 846 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-202ENST00000375405 CCDC121Q6ZUS5 278 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 CCDC83Q8IWF9 413 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 MAGEB10Q96LZ2 347 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-202ENST00000375405 SMAD5Q99717 465 aaKnown RBP5.13□□□□□ -1.59
SCN1A-202ENST00000375405 KAT14Q9H8E8 782 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 COX16Q9P0S2 106 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 HMGB3O15347 200 aaKnown RBP5.13□□□□□ -1.59
SCN1A-202ENST00000375405 GLRX3O76003 335 aaKnown RBP5.13□□□□□ -1.59
SCN1A-202ENST00000375405 ARPP19P56211 112 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 SESN3P58005 492 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 KRT85P78386 507 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 ARHGAP44Q17R89 818 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 ADCK5Q3MIX3 580 aa5.13□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms