RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 GTF2A1P52655 376 aaPredicted RBP12.82□□□□□ -0.36
PTPRF-203ENST00000372407 MXRA7P84157 204 aa12.82□□□□□ -0.36
PTPRF-203ENST00000372407 RAPGEF1Q13905 1077 aa12.82□□□□□ -0.36
PTPRF-203ENST00000372407 TMTC1Q8IUR5 882 aa12.82□□□□□ -0.36
PTPRF-203ENST00000372407 PUM3Q15397 648 aaKnown RBP12.81□□□□□ -0.36
PTPRF-203ENST00000372407 CSGALNACT2Q8N6G5 542 aa12.81□□□□□ -0.36
PTPRF-203ENST00000372407 CCDC26Q8TAB7 109 aa12.81□□□□□ -0.36
PTPRF-203ENST00000372407 XAGE2Q96GT9 111 aa12.81□□□□□ -0.36
PTPRF-203ENST00000372407 CCDC114Q96M63 670 aa12.81□□□□□ -0.36
PTPRF-203ENST00000372407 STK32BQ9NY57 414 aa12.81□□□□□ -0.36
PTPRF-203ENST00000372407 USP19O94966 1318 aa12.81□□□□□ -0.36
PTPRF-203ENST00000372407 TMEM110-MUSTN1A8MSY1 372 aa12.81□□□□□ -0.36
PTPRF-203ENST00000372407 KRT9P35527 623 aa12.81□□□□□ -0.36
PTPRF-203ENST00000372407 CYP26C1Q6V0L0 522 aa12.81□□□□□ -0.36
PTPRF-203ENST00000372407 SMC6Q96SB8 1091 aa12.81□□□□□ -0.36
PTPRF-203ENST00000372407 UNC13BO14795 1591 aa12.81□□□□□ -0.36
PTPRF-203ENST00000372407 LMTK2Q8IWU2 1503 aa12.81□□□□□ -0.36
PTPRF-203ENST00000372407 ITGA6P23229 1130 aa12.81□□□□□ -0.36
PTPRF-203ENST00000372407 CNNM4Q6P4Q7 775 aa12.81□□□□□ -0.36
PTPRF-203ENST00000372407 RTCBQ9Y3I0 505 aaKnown RBP12.81□□□□□ -0.36
PTPRF-203ENST00000372407 NLRP12P59046 1061 aa12.81□□□□□ -0.36
PTPRF-203ENST00000372407 PARP10Q53GL7 1025 aa12.81□□□□□ -0.36
PTPRF-203ENST00000372407 KRT40Q6A162 431 aa12.81□□□□□ -0.36
PTPRF-203ENST00000372407 CEP83Q9Y592 693 aa12.81□□□□□ -0.36
PTPRF-203ENST00000372407 POLD1P28340 1107 aa12.8□□□□□ -0.36
PTPRF-203ENST00000372407 GCKRQ14397 625 aa12.8□□□□□ -0.36
PTPRF-203ENST00000372407 DCAF17Q5H9S7 520 aaPredicted RBP12.8□□□□□ -0.36
PTPRF-203ENST00000372407 CCDC25Q86WR0 208 aa12.8□□□□□ -0.36
PTPRF-203ENST00000372407 CEP57Q86XR8 500 aa12.8□□□□□ -0.36
PTPRF-203ENST00000372407 SMAP1Q8IYB5 467 aaPredicted RBP12.8□□□□□ -0.36
PTPRF-203ENST00000372407 ZBTB9Q96C00 473 aa12.8□□□□□ -0.36
PTPRF-203ENST00000372407 CTNND2Q9UQB3 1225 aa12.8□□□□□ -0.36
PTPRF-203ENST00000372407 ADGRL3Q9HAR2 1447 aa12.8□□□□□ -0.36
PTPRF-203ENST00000372407 KIDINS220Q9ULH0 1771 aa12.8□□□□□ -0.36
PTPRF-203ENST00000372407 CDC37L1Q7L3B6 337 aa12.8□□□□□ -0.36
PTPRF-203ENST00000372407 CCDC50Q8IVM0 306 aa12.8□□□□□ -0.36
PTPRF-203ENST00000372407 JAKMIP2Q96AA8 810 aa12.8□□□□□ -0.36
PTPRF-203ENST00000372407 SUCLG2Q96I99 432 aa12.8□□□□□ -0.36
PTPRF-203ENST00000372407 NAP1L3Q99457 506 aaPredicted RBP12.8□□□□□ -0.36
PTPRF-203ENST00000372407 KIAA0232Q92628 1395 aa12.8□□□□□ -0.36
PTPRF-203ENST00000372407 SYNMO15061 1565 aa12.8□□□□□ -0.36
PTPRF-203ENST00000372407 SMIM23A6NLE4 172 aa12.8□□□□□ -0.36
PTPRF-203ENST00000372407 CETN3O15182 167 aa12.8□□□□□ -0.36
PTPRF-203ENST00000372407 TTC38Q5R3I4 469 aa12.8□□□□□ -0.36
PTPRF-203ENST00000372407 PIK3AP1Q6ZUJ8 805 aa12.8□□□□□ -0.36
PTPRF-203ENST00000372407 NUP58Q9BVL2 599 aa12.8□□□□□ -0.36
PTPRF-203ENST00000372407 SAMD15Q9P1V8 674 aa12.8□□□□□ -0.36
PTPRF-203ENST00000372407 MAPK8IP1Q9UQF2 711 aa12.8□□□□□ -0.36
PTPRF-203ENST00000372407 CEP152O94986 1710 aa12.79□□□□□ -0.36
PTPRF-203ENST00000372407 PAK1Q13153 545 aa12.79□□□□□ -0.36
PTPRF-203ENST00000372407 C8orf74Q6P047 294 aa12.79□□□□□ -0.36
PTPRF-203ENST00000372407 C17orf53Q8N3J3 647 aaPredicted RBP12.79□□□□□ -0.36
PTPRF-203ENST00000372407 SYNRGQ9UMZ2 1314 aa12.79□□□□□ -0.36
PTPRF-203ENST00000372407 B4DLN1 442 aa12.79□□□□□ -0.36
PTPRF-203ENST00000372407 PPP1R7Q15435 360 aa12.79□□□□□ -0.36
PTPRF-203ENST00000372407 TEX11Q8IYF3 940 aa12.79□□□□□ -0.36
PTPRF-203ENST00000372407 C10orf67Q8IYJ2 551 aa12.79□□□□□ -0.36
PTPRF-203ENST00000372407 ARMT1Q9H993 441 aa12.79□□□□□ -0.36
PTPRF-203ENST00000372407 JAK2O60674 1132 aa12.79□□□□□ -0.36
PTPRF-203ENST00000372407 APBA3O96018 575 aa12.79□□□□□ -0.36
PTPRF-203ENST00000372407 MYCNP04198 464 aaPredicted RBP12.79□□□□□ -0.36
PTPRF-203ENST00000372407 MSANTD4Q8NCY6 345 aa12.79□□□□□ -0.36
PTPRF-203ENST00000372407 LRRC45Q96CN5 670 aa12.79□□□□□ -0.36
PTPRF-203ENST00000372407 LGR6Q9HBX8 967 aa12.79□□□□□ -0.36
PTPRF-203ENST00000372407 KIF24Q5T7B8 1368 aa12.79□□□□□ -0.36
PTPRF-203ENST00000372407 A6NNZ2 444 aa12.79□□□□□ -0.36
PTPRF-203ENST00000372407 PDE8AO60658 829 aa12.79□□□□□ -0.36
PTPRF-203ENST00000372407 TUBB8Q3ZCM7 444 aa12.79□□□□□ -0.36
PTPRF-203ENST00000372407 CCNL1Q9UK58 526 aaPredicted RBP12.79□□□□□ -0.36
PTPRF-203ENST00000372407 FRMD4BQ9Y2L6 1034 aa12.79□□□□□ -0.36
PTPRF-203ENST00000372407 CAMSAP1Q5T5Y3 1602 aa12.78□□□□□ -0.36
PTPRF-203ENST00000372407 EPB41P11171 864 aaKnown RBP12.78□□□□□ -0.36
PTPRF-203ENST00000372407 ATP5JP18859 108 aa12.78□□□□□ -0.36
PTPRF-203ENST00000372407 ELF2Q15723 593 aa12.78□□□□□ -0.36
PTPRF-203ENST00000372407 TTC31Q49AM3 519 aaPredicted RBP12.78□□□□□ -0.36
PTPRF-203ENST00000372407 SPATA24Q86W54 205 aa12.78□□□□□ -0.36
PTPRF-203ENST00000372407 KCNK9Q9NPC2 374 aa12.78□□□□□ -0.36
PTPRF-203ENST00000372407 PRR36Q9H6K5 1346 aa12.78□□□□□ -0.36
PTPRF-203ENST00000372407 PRDM1O75626 825 aa12.78□□□□□ -0.36
PTPRF-203ENST00000372407 ATP2A2P16615 1042 aaKnown RBP12.78□□□□□ -0.36
PTPRF-203ENST00000372407 MAGEA1P43355 309 aa12.78□□□□□ -0.36
PTPRF-203ENST00000372407 SSH3Q8TE77 659 aa12.78□□□□□ -0.36
PTPRF-203ENST00000372407 ZNF594Q96JF6 807 aaPredicted RBP12.78□□□□□ -0.36
PTPRF-203ENST00000372407 GLT8D2Q9H1C3 349 aa12.78□□□□□ -0.36
PTPRF-203ENST00000372407 CROCC2H7BZ55 1655 aa12.78□□□□□ -0.36
PTPRF-203ENST00000372407 NDUFAB1O14561 156 aa12.77□□□□□ -0.36
PTPRF-203ENST00000372407 ACTN4O43707 911 aaKnown RBP12.77□□□□□ -0.36
PTPRF-203ENST00000372407 HIBADHP31937 336 aaKnown RBP12.77□□□□□ -0.36
PTPRF-203ENST00000372407 GABPB1Q06547 395 aaPredicted RBP12.77□□□□□ -0.36
PTPRF-203ENST00000372407 SETDB1Q15047 1291 aa12.77□□□□□ -0.36
PTPRF-203ENST00000372407 SEL1L2Q5TEA6 688 aa12.77□□□□□ -0.36
PTPRF-203ENST00000372407 AFAP1L1Q8TED9 768 aa12.77□□□□□ -0.36
PTPRF-203ENST00000372407 UBLCP1Q8WVY7 318 aaPredicted RBP12.77□□□□□ -0.36
PTPRF-203ENST00000372407 LPIN2Q92539 896 aa12.77□□□□□ -0.36
PTPRF-203ENST00000372407 RASSF4Q9H2L5 321 aa12.77□□□□□ -0.36
PTPRF-203ENST00000372407 SERPINA10Q9UK55 444 aa12.77□□□□□ -0.36
PTPRF-203ENST00000372407 JAG2Q9Y219 1238 aa12.77□□□□□ -0.36
PTPRF-203ENST00000372407 POSTNQ15063 836 aa12.77□□□□□ -0.36
PTPRF-203ENST00000372407 SLC9C1Q4G0N8 1177 aa12.77□□□□□ -0.36
PTPRF-203ENST00000372407 HAUS3Q68CZ6 603 aa12.77□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms