RNA–Protein interactions for RNA: ENST00000366744.5

MRPL55-216, Transcript of mitochondrial ribosomal protein L55, human

APPRIS P1 TSL 3 BASIC

Gene MRPL55, Length 726 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MRPL55-216	ENST00000366744	IRF6	O14896	467 aa		11.25	□□□□□ -0.61
MRPL55-216	ENST00000366744	TBC1D12	O60347	775 aa		11.25	□□□□□ -0.61
MRPL55-216	ENST00000366744	GJA5	P36382	358 aa		11.25	□□□□□ -0.61
MRPL55-216	ENST00000366744	DYNLL1	P63167	89 aa	Known RBP	11.25	□□□□□ -0.61
MRPL55-216	ENST00000366744	HDAC1	Q13547	482 aa	Predicted RBP	11.25	□□□□□ -0.61
MRPL55-216	ENST00000366744	DGKZ	Q13574	1117 aa		11.25	□□□□□ -0.61
MRPL55-216	ENST00000366744	IFFO2	Q5TF58	517 aa		11.25	□□□□□ -0.61
MRPL55-216	ENST00000366744	SH3BP5L	Q7L8J4	393 aa		11.25	□□□□□ -0.61
MRPL55-216	ENST00000366744	TTC6	Q86TZ1	520 aa		11.25	□□□□□ -0.61
MRPL55-216	ENST00000366744	CFHR5	Q9BXR6	569 aa		11.25	□□□□□ -0.61
MRPL55-216	ENST00000366744	TBC1D2	Q9BYX2	928 aa		11.25	□□□□□ -0.61
MRPL55-216	ENST00000366744	RWDD1	Q9H446	243 aa	Predicted RBP	11.25	□□□□□ -0.61
MRPL55-216	ENST00000366744	AS3MT	Q9HBK9	375 aa		11.25	□□□□□ -0.61
MRPL55-216	ENST00000366744	ZFYVE28	Q9HCC9	887 aa		11.25	□□□□□ -0.61
MRPL55-216	ENST00000366744	ZCCHC17	Q9NP64	241 aa	Known RBP	11.25	□□□□□ -0.61
MRPL55-216	ENST00000366744	SAP30BP	Q9UHR5	308 aa	Known RBP	11.25	□□□□□ -0.61
MRPL55-216	ENST00000366744	FAM196B	A6NMK8	535 aa		11.24	□□□□□ -0.61
MRPL55-216	ENST00000366744	GPR25	O00155	361 aa		11.24	□□□□□ -0.61
MRPL55-216	ENST00000366744	FKTN	O75072	461 aa		11.24	□□□□□ -0.61
MRPL55-216	ENST00000366744	GLRX3	O76003	335 aa	Known RBP	11.24	□□□□□ -0.61
MRPL55-216	ENST00000366744	MX1	P20591	662 aa		11.24	□□□□□ -0.61
MRPL55-216	ENST00000366744	ARHGEF6	Q15052	776 aa		11.24	□□□□□ -0.61
MRPL55-216	ENST00000366744	NOM1	Q5C9Z4	860 aa	Known RBP	11.24	□□□□□ -0.61
MRPL55-216	ENST00000366744	CTU1	Q7Z7A3	348 aa	Known RBP	11.24	□□□□□ -0.61
MRPL55-216	ENST00000366744	BRI3BP	Q8WY22	251 aa		11.24	□□□□□ -0.61
MRPL55-216	ENST00000366744	PALD1	Q9ULE6	856 aa		11.24	□□□□□ -0.61
MRPL55-216	ENST00000366744	SUPT16H	Q9Y5B9	1047 aa	Known RBP	11.24	□□□□□ -0.61
MRPL55-216	ENST00000366744	TESPA1	A2RU30	521 aa	Predicted RBP	11.23	□□□□□ -0.61
MRPL55-216	ENST00000366744	CAPN15	O75808	1086 aa		11.23	□□□□□ -0.61
MRPL55-216	ENST00000366744	MBD4	O95243	580 aa		11.23	□□□□□ -0.61
MRPL55-216	ENST00000366744	POLR3D	P05423	398 aa	Predicted RBP	11.23	□□□□□ -0.61
MRPL55-216	ENST00000366744	ZFY	P08048	801 aa	Predicted RBP	11.23	□□□□□ -0.61
MRPL55-216	ENST00000366744	ASNS	P08243	561 aa		11.23	□□□□□ -0.61
MRPL55-216	ENST00000366744	PTPRA	P18433	802 aa		11.23	□□□□□ -0.61
MRPL55-216	ENST00000366744	ADD2	P35612	726 aa		11.23	□□□□□ -0.61
MRPL55-216	ENST00000366744	CRHR2	Q13324	411 aa		11.23	□□□□□ -0.61
MRPL55-216	ENST00000366744	UBE3C	Q15386	1083 aa		11.23	□□□□□ -0.61
MRPL55-216	ENST00000366744	SLC4A8	Q2Y0W8	1093 aa		11.23	□□□□□ -0.61
MRPL55-216	ENST00000366744	ANKRD45	Q5TZF3	282 aa		11.23	□□□□□ -0.61
MRPL55-216	ENST00000366744	FASTKD5	Q7L8L6	764 aa	Known RBP	11.23	□□□□□ -0.61
MRPL55-216	ENST00000366744	FOXP4	Q8IVH2	680 aa	Predicted RBP	11.23	□□□□□ -0.61
MRPL55-216	ENST00000366744	ZNF296	Q8WUU4	475 aa	Predicted RBP	11.23	□□□□□ -0.61
MRPL55-216	ENST00000366744	EDC3	Q96F86	508 aa	Known RBP	11.23	□□□□□ -0.61
MRPL55-216	ENST00000366744	ERO1A	Q96HE7	468 aa		11.23	□□□□□ -0.61
MRPL55-216	ENST00000366744	MS4A4A	Q96JQ5	239 aa		11.23	□□□□□ -0.61
MRPL55-216	ENST00000366744	PARK7	Q99497	189 aa	Known RBP	11.23	□□□□□ -0.61
MRPL55-216	ENST00000366744	MCM9	Q9NXL9	1143 aa		11.23	□□□□□ -0.61
MRPL55-216	ENST00000366744	SERPINB13	Q9UIV8	391 aa		11.23	□□□□□ -0.61
MRPL55-216	ENST00000366744	KCNH4	Q9UQ05	1017 aa		11.23	□□□□□ -0.61
MRPL55-216	ENST00000366744	ZHX2	Q9Y6X8	837 aa		11.23	□□□□□ -0.61
MRPL55-216	ENST00000366744	TRIM75P	A6NK02	468 aa		11.22	□□□□□ -0.61
MRPL55-216	ENST00000366744	PHF20L1	A8MW92	1017 aa		11.22	□□□□□ -0.61
MRPL55-216	ENST00000366744	CXCL11	O14625	94 aa		11.22	□□□□□ -0.61
MRPL55-216	ENST00000366744	KIF22	Q14807	665 aa		11.22	□□□□□ -0.61
MRPL55-216	ENST00000366744	PKN2	Q16513	984 aa	Known RBP	11.22	□□□□□ -0.61
MRPL55-216	ENST00000366744	TSHZ3	Q63HK5	1081 aa		11.22	□□□□□ -0.61
MRPL55-216	ENST00000366744	GADL1	Q6ZQY3	521 aa		11.22	□□□□□ -0.61
MRPL55-216	ENST00000366744	RIOK1	Q9BRS2	568 aa	Known RBP	11.22	□□□□□ -0.61
MRPL55-216	ENST00000366744	FSD1	Q9BTV5	496 aa		11.22	□□□□□ -0.61
MRPL55-216	ENST00000366744	EHD4	Q9H223	541 aa		11.22	□□□□□ -0.61
MRPL55-216	ENST00000366744	GINM1	Q9NU53	330 aa		11.22	□□□□□ -0.61
MRPL55-216	ENST00000366744	PNMA3	Q9UL41	463 aa		11.22	□□□□□ -0.61
MRPL55-216	ENST00000366744	MYH4	Q9Y623	1939 aa		11.21	□□□□□ -0.61
MRPL55-216	ENST00000366744	TCRBV5S4A2T	A0A5A2	114 aa		11.21	□□□□□ -0.61
MRPL55-216	ENST00000366744	USP17L5	A8MUK1	530 aa		11.21	□□□□□ -0.61
MRPL55-216	ENST00000366744	CAP2	P40123	477 aa		11.21	□□□□□ -0.61
MRPL55-216	ENST00000366744	MAP3K10	Q02779	954 aa		11.21	□□□□□ -0.61
MRPL55-216	ENST00000366744	PABPC4	Q13310	644 aa	Known RBP eCLIP	11.21	□□□□□ -0.61	4e-7	■■■■□ 25.7
MRPL55-216	ENST00000366744	ANKRD23	Q86SG2	305 aa		11.21	□□□□□ -0.61
MRPL55-216	ENST00000366744	FAM43A	Q8N2R8	423 aa		11.21	□□□□□ -0.61
MRPL55-216	ENST00000366744	LCORL	Q8N3X6	602 aa		11.21	□□□□□ -0.61
MRPL55-216	ENST00000366744	KBTBD3	Q8NAB2	608 aa		11.21	□□□□□ -0.61
MRPL55-216	ENST00000366744	EXOC6	Q8TAG9	804 aa		11.21	□□□□□ -0.61
MRPL55-216	ENST00000366744	ABHD8	Q96I13	439 aa		11.21	□□□□□ -0.61
MRPL55-216	ENST00000366744	FEZ1	Q99689	392 aa		11.21	□□□□□ -0.61
MRPL55-216	ENST00000366744	MCOLN1	Q9GZU1	580 aa		11.21	□□□□□ -0.61
MRPL55-216	ENST00000366744	ARMT1	Q9H993	441 aa		11.21	□□□□□ -0.61
MRPL55-216	ENST00000366744	ATP8A2	Q9NTI2	1148 aa		11.21	□□□□□ -0.61
MRPL55-216	ENST00000366744	TAOK2	Q9UL54	1235 aa		11.21	□□□□□ -0.61
MRPL55-216	ENST00000366744	ZSWIM8	A7E2V4	1837 aa		11.21	□□□□□ -0.62
MRPL55-216	ENST00000366744		A0A0G2JLL6	359 aa	Predicted RBP	11.2	□□□□□ -0.62
MRPL55-216	ENST00000366744	BTBD19	C9JJ37	291 aa		11.2	□□□□□ -0.62
MRPL55-216	ENST00000366744	PDHX	O00330	501 aa		11.2	□□□□□ -0.62
MRPL55-216	ENST00000366744	SP3	Q02447	781 aa		11.2	□□□□□ -0.62
MRPL55-216	ENST00000366744	PRRT2	Q7Z6L0	340 aa	Predicted RBP	11.2	□□□□□ -0.62
MRPL55-216	ENST00000366744	ZNF280C	Q8ND82	737 aa		11.2	□□□□□ -0.62
MRPL55-216	ENST00000366744	SMCR8	Q8TEV9	937 aa	Predicted RBP	11.2	□□□□□ -0.62
MRPL55-216	ENST00000366744	SDR42E1	Q8WUS8	393 aa		11.2	□□□□□ -0.62
MRPL55-216	ENST00000366744	APPBP2	Q92624	585 aa		11.2	□□□□□ -0.62
MRPL55-216	ENST00000366744	PTPN18	Q99952	460 aa		11.2	□□□□□ -0.62
MRPL55-216	ENST00000366744	CABP5	Q9NP86	173 aa		11.2	□□□□□ -0.62
MRPL55-216	ENST00000366744	TMOD4	Q9NZQ9	345 aa		11.2	□□□□□ -0.62
MRPL55-216	ENST00000366744	ZBTB21	Q9ULJ3	1066 aa		11.2	□□□□□ -0.62
MRPL55-216	ENST00000366744	SLC4A4	Q9Y6R1	1079 aa		11.2	□□□□□ -0.62
MRPL55-216	ENST00000366744	RBBP6	Q7Z6E9	1792 aa	Known RBP	11.19	□□□□□ -0.62
MRPL55-216	ENST00000366744	RNF113A	O15541	343 aa	Known RBP	11.19	□□□□□ -0.62
MRPL55-216	ENST00000366744	GDF11	O95390	407 aa		11.19	□□□□□ -0.62
MRPL55-216	ENST00000366744	GNAT2	P19087	354 aa		11.19	□□□□□ -0.62
MRPL55-216	ENST00000366744	PROCA1	Q8NCQ7	364 aa	Predicted RBP	11.19	□□□□□ -0.62
MRPL55-216	ENST00000366744	LNPK	Q9C0E8	428 aa		11.19	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms