RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 IFRD2Q12894 506 aaPredicted RBP17.44■□□□□ 0.38
PTPRF-201ENST00000359947 SMC1BQ8NDV3 1235 aa17.44■□□□□ 0.38
PTPRF-201ENST00000359947 RDH13Q8NBN7 331 aa17.44■□□□□ 0.38
PTPRF-201ENST00000359947 USTQ9Y2C2 406 aa17.44■□□□□ 0.38
PTPRF-201ENST00000359947 ABCC10Q5T3U5 1492 aa17.44■□□□□ 0.38
PTPRF-201ENST00000359947 ALAS1P13196 640 aa17.44■□□□□ 0.38
PTPRF-201ENST00000359947 TNFAIP3P21580 790 aa17.44■□□□□ 0.38
PTPRF-201ENST00000359947 MKRN3Q13064 507 aaKnown RBP17.44■□□□□ 0.38
PTPRF-201ENST00000359947 OTUD7AQ8TE49 926 aaPredicted RBP17.44■□□□□ 0.38
PTPRF-201ENST00000359947 APPBP2Q92624 585 aa17.44■□□□□ 0.38
PTPRF-201ENST00000359947 CRCPO75575 148 aa17.43■□□□□ 0.38
PTPRF-201ENST00000359947 GYG1P46976 350 aa17.43■□□□□ 0.38
PTPRF-201ENST00000359947 RPS8P62241 208 aaKnown RBP17.43■□□□□ 0.38
PTPRF-201ENST00000359947 ZNF569Q5MCW4 686 aa17.43■□□□□ 0.38
PTPRF-201ENST00000359947 KCNK9Q9NPC2 374 aa17.43■□□□□ 0.38
PTPRF-201ENST00000359947 USP19O94966 1318 aa17.43■□□□□ 0.38
PTPRF-201ENST00000359947 SLC27A2O14975 620 aa17.43■□□□□ 0.38
PTPRF-201ENST00000359947 CALCRLQ16602 461 aa17.43■□□□□ 0.38
PTPRF-201ENST00000359947 SNX29Q8TEQ0 813 aa17.43■□□□□ 0.38
PTPRF-201ENST00000359947 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.43■□□□□ 0.389e-7■■□□□ 12
PTPRF-201ENST00000359947 V9GYY5 206 aaPredicted RBP17.43■□□□□ 0.38
PTPRF-201ENST00000359947 PLCD1P51178 756 aa17.43■□□□□ 0.38
PTPRF-201ENST00000359947 POLR2DO15514 142 aaKnown RBP17.43■□□□□ 0.38
PTPRF-201ENST00000359947 CALUO43852 315 aaPredicted RBP17.43■□□□□ 0.38
PTPRF-201ENST00000359947 MAP7D1Q3KQU3 841 aa17.43■□□□□ 0.38
PTPRF-201ENST00000359947 CMTR1Q8N1G2 835 aaKnown RBP17.43■□□□□ 0.38
PTPRF-201ENST00000359947 LUC7L2Q9Y383 392 aaKnown RBP17.43■□□□□ 0.38
PTPRF-201ENST00000359947 RPS6KB1P23443 525 aa17.43■□□□□ 0.38
PTPRF-201ENST00000359947 CCDC6Q16204 474 aa17.43■□□□□ 0.38
PTPRF-201ENST00000359947 KLHL40Q2TBA0 621 aa17.43■□□□□ 0.38
PTPRF-201ENST00000359947 FAM200AQ8TCP9 573 aa17.43■□□□□ 0.38
PTPRF-201ENST00000359947 MRPL44Q9H9J2 332 aaKnown RBP17.43■□□□□ 0.38
PTPRF-201ENST00000359947 PRPF6O94906 941 aaKnown RBP17.43■□□□□ 0.38
PTPRF-201ENST00000359947 MROH5Q6ZUA9 1318 aa17.43■□□□□ 0.38
PTPRF-201ENST00000359947 SBNO1A3KN83 1393 aa17.42■□□□□ 0.38
PTPRF-201ENST00000359947 ANGEL1Q9UNK9 670 aaKnown RBP17.42■□□□□ 0.38
PTPRF-201ENST00000359947 ARHGEF10O15013 1369 aa17.42■□□□□ 0.38
PTPRF-201ENST00000359947 SLU7O95391 586 aaKnown RBP17.42■□□□□ 0.38
PTPRF-201ENST00000359947 NELFCDQ8IXH7 590 aa17.42■□□□□ 0.38
PTPRF-201ENST00000359947 EXOC7Q9UPT5 735 aa17.42■□□□□ 0.38
PTPRF-201ENST00000359947 DNAJC21Q5F1R6 531 aaKnown RBP17.42■□□□□ 0.38
PTPRF-201ENST00000359947 SEL1L2Q5TEA6 688 aa17.42■□□□□ 0.38
PTPRF-201ENST00000359947 FAM204AQ9H8W3 233 aa17.42■□□□□ 0.38
PTPRF-201ENST00000359947 DNM3Q9UQ16 869 aa17.42■□□□□ 0.38
PTPRF-201ENST00000359947 KCNJ14Q9UNX9 436 aa17.42■□□□□ 0.38
PTPRF-201ENST00000359947 ATF5Q9Y2D1 282 aaPredicted RBP17.42■□□□□ 0.38
PTPRF-201ENST00000359947 CD19P15391 556 aa17.41■□□□□ 0.38
PTPRF-201ENST00000359947 GCKRQ14397 625 aa17.41■□□□□ 0.38
PTPRF-201ENST00000359947 INF2Q27J81 1249 aa17.41■□□□□ 0.38
PTPRF-201ENST00000359947 ATP2A2P16615 1042 aaKnown RBP17.41■□□□□ 0.38
PTPRF-201ENST00000359947 PFDN4Q9NQP4 134 aa17.41■□□□□ 0.38
PTPRF-201ENST00000359947 CTSWP56202 376 aa17.41■□□□□ 0.38
PTPRF-201ENST00000359947 IGBP1P78318 339 aa17.41■□□□□ 0.38
PTPRF-201ENST00000359947 NLRX1Q86UT6 975 aa17.41■□□□□ 0.38
PTPRF-201ENST00000359947 TMEM87BQ96K49 555 aa17.41■□□□□ 0.38
PTPRF-201ENST00000359947 RXRBP28702 533 aa17.41■□□□□ 0.38
PTPRF-201ENST00000359947 UVSSAQ2YD98 709 aa17.41■□□□□ 0.38
PTPRF-201ENST00000359947 HERC4Q5GLZ8 1057 aaPredicted RBP17.41■□□□□ 0.38
PTPRF-201ENST00000359947 AS3MTQ9HBK9 375 aa17.41■□□□□ 0.38
PTPRF-201ENST00000359947 CFAP157Q5JU67 520 aa17.41■□□□□ 0.38
PTPRF-201ENST00000359947 SLC5A4Q9NY91 659 aa17.41■□□□□ 0.38
PTPRF-201ENST00000359947 CLRN2A0PK11 232 aa17.41■□□□□ 0.38
PTPRF-201ENST00000359947 UTP14CQ5TAP6 766 aaKnown RBP17.41■□□□□ 0.38
PTPRF-201ENST00000359947 SESTD1Q86VW0 696 aa17.41■□□□□ 0.38
PTPRF-201ENST00000359947 ZFYVE9O95405 1425 aa17.41■□□□□ 0.38
PTPRF-201ENST00000359947 CNNM4Q6P4Q7 775 aa17.4■□□□□ 0.38
PTPRF-201ENST00000359947 LRRC47Q8N1G4 583 aaKnown RBP17.4■□□□□ 0.38
PTPRF-201ENST00000359947 GTPBP4Q9BZE4 634 aaKnown RBP17.4■□□□□ 0.38
PTPRF-201ENST00000359947 RHOXF2BP0C7M4 288 aa17.4■□□□□ 0.38
PTPRF-201ENST00000359947 TNFAIP1Q13829 316 aa17.4■□□□□ 0.38
PTPRF-201ENST00000359947 CCT6BQ92526 530 aa17.4■□□□□ 0.38
PTPRF-201ENST00000359947 RHOXF2Q9BQY4 288 aa17.4■□□□□ 0.38
PTPRF-201ENST00000359947 MAP3K1Q13233 1512 aa17.4■□□□□ 0.38
PTPRF-201ENST00000359947 ATRIPQ8WXE1 791 aa17.4■□□□□ 0.38
PTPRF-201ENST00000359947 DKC1O60832 514 aaKnown RBP eCLIP17.4■□□□□ 0.385e-7■■■■■ 33.7
PTPRF-201ENST00000359947 TBC1D8BQ0IIM8 1120 aa17.4■□□□□ 0.38
PTPRF-201ENST00000359947 TTC38Q5R3I4 469 aa17.4■□□□□ 0.38
PTPRF-201ENST00000359947 FAM102BQ5T8I3 360 aa17.4■□□□□ 0.38
PTPRF-201ENST00000359947 ANKRD35Q8N283 1001 aa17.4■□□□□ 0.38
PTPRF-201ENST00000359947 LRMPQ12912 555 aa17.4■□□□□ 0.38
PTPRF-201ENST00000359947 MED10Q9BTT4 135 aa17.4■□□□□ 0.38
PTPRF-201ENST00000359947 IL13P35225 146 aa17.39■□□□□ 0.38
PTPRF-201ENST00000359947 BCAMP50895 628 aa17.39■□□□□ 0.38
PTPRF-201ENST00000359947 ATXN8OSP0DMR3 200 aa17.39■□□□□ 0.37
PTPRF-201ENST00000359947 USPL1Q5W0Q7 1092 aa17.39■□□□□ 0.37
PTPRF-201ENST00000359947 SDR42E1Q8WUS8 393 aa17.39■□□□□ 0.37
PTPRF-201ENST00000359947 LRWD1Q9UFC0 647 aa17.39■□□□□ 0.37
PTPRF-201ENST00000359947 NUP153P49790 1475 aaKnown RBP17.39■□□□□ 0.37
PTPRF-201ENST00000359947 TNNI1P19237 187 aa17.39■□□□□ 0.37
PTPRF-201ENST00000359947 ERCC5P28715 1186 aaPredicted RBP17.39■□□□□ 0.37
PTPRF-201ENST00000359947 PPARDQ03181 441 aa17.39■□□□□ 0.37
PTPRF-201ENST00000359947 TBC1D22AQ8WUA7 517 aa17.39■□□□□ 0.37
PTPRF-201ENST00000359947 VPS54Q9P1Q0 977 aa17.39■□□□□ 0.37
PTPRF-201ENST00000359947 ZBTB24O43167 697 aaPredicted RBP17.39■□□□□ 0.37
PTPRF-201ENST00000359947 ARID4AP29374 1257 aaPredicted RBP17.39■□□□□ 0.37
PTPRF-201ENST00000359947 KIAA1524Q8TCG1 905 aa17.39■□□□□ 0.37
PTPRF-201ENST00000359947 STAMQ92783 540 aa17.39■□□□□ 0.37
PTPRF-201ENST00000359947 SBDSQ9Y3A5 250 aaKnown RBP eCLIP17.39■□□□□ 0.37
PTPRF-201ENST00000359947 Q3C1V9 767 aa17.39■□□□□ 0.37
PTPRF-201ENST00000359947 ZBTB40Q9NUA8 1239 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms