RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 PHF20L1A8MW92 1017 aa20.45■□□□□ 0.86
CLN3-203ENST00000357806 CHGBP05060 677 aa20.45■□□□□ 0.86
CLN3-203ENST00000357806 GJA5P36382 358 aa20.45■□□□□ 0.86
CLN3-203ENST00000357806 CTCFP49711 727 aaPredicted RBP20.45■□□□□ 0.86
CLN3-203ENST00000357806 OTUD5Q96G74 571 aa20.45■□□□□ 0.86
CLN3-203ENST00000357806 ARMT1Q9H993 441 aa20.45■□□□□ 0.86
CLN3-203ENST00000357806 RNF113AO15541 343 aaKnown RBP20.44■□□□□ 0.86
CLN3-203ENST00000357806 CNKSR2Q8WXI2 1034 aa20.44■□□□□ 0.86
CLN3-203ENST00000357806 APPBP2Q92624 585 aa20.44■□□□□ 0.86
CLN3-203ENST00000357806 TRIM34Q9BYJ4 488 aa20.44■□□□□ 0.86
CLN3-203ENST00000357806 SAGE1Q9NXZ1 904 aa20.44■□□□□ 0.86
CLN3-203ENST00000357806 CASP8AP2Q9UKL3 1982 aa20.44■□□□□ 0.86
CLN3-203ENST00000357806 FAM196BA6NMK8 535 aa20.43■□□□□ 0.86
CLN3-203ENST00000357806 SLURP2P0DP57 97 aa20.43■□□□□ 0.86
CLN3-203ENST00000357806 TM4SF4P48230 202 aa20.43■□□□□ 0.86
CLN3-203ENST00000357806 INHBEP58166 350 aa20.43■□□□□ 0.86
CLN3-203ENST00000357806 SCYL3Q8IZE3 742 aa20.43■□□□□ 0.86
CLN3-203ENST00000357806 CRACR2BQ8N4Y2 399 aaPredicted RBP20.43■□□□□ 0.86
CLN3-203ENST00000357806 SDR42E1Q8WUS8 393 aa20.43■□□□□ 0.86
CLN3-203ENST00000357806 EVI5LQ96CN4 794 aa20.43■□□□□ 0.86
CLN3-203ENST00000357806 PUS7LQ9H0K6 701 aaKnown RBP20.43■□□□□ 0.86
CLN3-203ENST00000357806 CTNND1O60716 968 aaKnown RBP20.43■□□□□ 0.86
CLN3-203ENST00000357806 CENPBP07199 599 aaPredicted RBP20.43■□□□□ 0.86
CLN3-203ENST00000357806 PPATQ06203 517 aa20.43■□□□□ 0.86
CLN3-203ENST00000357806 PPIL2Q13356 520 aa20.43■□□□□ 0.86
CLN3-203ENST00000357806 SLC4A8Q2Y0W8 1093 aa20.43■□□□□ 0.86
CLN3-203ENST00000357806 FOXP4Q8IVH2 680 aaPredicted RBP20.43■□□□□ 0.86
CLN3-203ENST00000357806 PLEKHM2Q8IWE5 1019 aa20.43■□□□□ 0.86
CLN3-203ENST00000357806 OSBPL3Q9H4L5 887 aa20.43■□□□□ 0.86
CLN3-203ENST00000357806 PICK1Q9NRD5 415 aa20.43■□□□□ 0.86
CLN3-203ENST00000357806 TTC6Q86TZ1 520 aa20.42■□□□□ 0.86
CLN3-203ENST00000357806 METTL16Q86W50 562 aaKnown RBP20.42■□□□□ 0.86
CLN3-203ENST00000357806 DCP1AQ9NPI6 582 aaPredicted RBP20.42■□□□□ 0.86
CLN3-203ENST00000357806 ATP8A2Q9NTI2 1148 aa20.42■□□□□ 0.86
CLN3-203ENST00000357806 LOC285556D6RIA3 1793 aa20.42■□□□□ 0.86
CLN3-203ENST00000357806 HSPA8P11142 646 aaKnown RBP20.41■□□□□ 0.86
CLN3-203ENST00000357806 GTF2A2P52657 109 aa20.41■□□□□ 0.86
CLN3-203ENST00000357806 DDRGK1Q96HY6 314 aa20.41■□□□□ 0.86
CLN3-203ENST00000357806 EHD4Q9H223 541 aa20.41■□□□□ 0.86
CLN3-203ENST00000357806 RNF186Q9NXI6 227 aa20.41■□□□□ 0.86
CLN3-203ENST00000357806 MCM9Q9NXL9 1143 aa20.41■□□□□ 0.86
CLN3-203ENST00000357806 POLR3DP05423 398 aaPredicted RBP20.4■□□□□ 0.86
CLN3-203ENST00000357806 OSBP2Q969R2 916 aa20.4■□□□□ 0.86
CLN3-203ENST00000357806 DNAJC18Q9H819 358 aa20.4■□□□□ 0.86
CLN3-203ENST00000357806 SERPINB13Q9UIV8 391 aa20.4■□□□□ 0.86
CLN3-203ENST00000357806 SLC4A4Q9Y6R1 1079 aa20.4■□□□□ 0.86
CLN3-203ENST00000357806 TRIM6-TRIM34B2RNG4 842 aa20.39■□□□□ 0.85
CLN3-203ENST00000357806 IRF6O14896 467 aa20.39■□□□□ 0.85
CLN3-203ENST00000357806 TRPA1O75762 1119 aa20.39■□□□□ 0.85
CLN3-203ENST00000357806 NEFLP07196 543 aa20.39■□□□□ 0.85
CLN3-203ENST00000357806 MS4A4AQ96JQ5 239 aa20.39■□□□□ 0.85
CLN3-203ENST00000357806 TSKSQ9UJT2 592 aa20.39■□□□□ 0.85
CLN3-203ENST00000357806 TESPA1A2RU30 521 aaPredicted RBP20.38■□□□□ 0.85
CLN3-203ENST00000357806 GPAA1O43292 621 aa20.38■□□□□ 0.85
CLN3-203ENST00000357806 PRKAB2O43741 272 aa20.38■□□□□ 0.85
CLN3-203ENST00000357806 ALDH1A1P00352 501 aa20.38■□□□□ 0.85
CLN3-203ENST00000357806 CAP2P40123 477 aa20.38■□□□□ 0.85
CLN3-203ENST00000357806 LBX1P52954 281 aa20.38■□□□□ 0.85
CLN3-203ENST00000357806 SNAPC2Q13487 334 aa20.38■□□□□ 0.85
CLN3-203ENST00000357806 IFNL1Q8IU54 200 aa20.38■□□□□ 0.85
CLN3-203ENST00000357806 AMOTL1Q8IY63 956 aa20.38■□□□□ 0.85
CLN3-203ENST00000357806 STRBPQ96SI9 672 aaKnown RBP20.38■□□□□ 0.85
CLN3-203ENST00000357806 CCL15-CCL14A0A0B4J2E2 113 aa20.37■□□□□ 0.85
CLN3-203ENST00000357806 M0R2C6 588 aa20.37■□□□□ 0.85
CLN3-203ENST00000357806 PTPRAP18433 802 aa20.37■□□□□ 0.85
CLN3-203ENST00000357806 CCL15Q16663 113 aa20.37■□□□□ 0.85
CLN3-203ENST00000357806 ZMYM1Q5SVZ6 1142 aa20.37■□□□□ 0.85
CLN3-203ENST00000357806 OTUD7BQ6GQQ9 843 aa20.37■□□□□ 0.85
CLN3-203ENST00000357806 TICAM2Q86XR7 235 aa20.37■□□□□ 0.85
CLN3-203ENST00000357806 PRDM10Q9NQV6 1147 aa20.37■□□□□ 0.85
CLN3-203ENST00000357806 IGF2BP3O00425 579 aaKnown RBP eCLIP20.37■□□□□ 0.85
CLN3-203ENST00000357806 CETPP11597 493 aa20.37■□□□□ 0.85
CLN3-203ENST00000357806 GNAT2P19087 354 aa20.37■□□□□ 0.85
CLN3-203ENST00000357806 PLCD1P51178 756 aa20.37■□□□□ 0.85
CLN3-203ENST00000357806 RILPL2Q969X0 211 aa20.37■□□□□ 0.85
CLN3-203ENST00000357806 KCNH4Q9UQ05 1017 aa20.37■□□□□ 0.85
CLN3-203ENST00000357806 PDE4AP27815 886 aa20.36■□□□□ 0.85
CLN3-203ENST00000357806 BRI3BPQ8WY22 251 aa20.36■□□□□ 0.85
CLN3-203ENST00000357806 TBC1D2Q9BYX2 928 aa20.36■□□□□ 0.85
CLN3-203ENST00000357806 ARPP21Q9UBL0 812 aaPredicted RBP20.36■□□□□ 0.85
CLN3-203ENST00000357806 ZHX2Q9Y6X8 837 aa20.36■□□□□ 0.85
CLN3-203ENST00000357806 ASNSP08243 561 aa20.35■□□□□ 0.85
CLN3-203ENST00000357806 RRP1BQ14684 758 aaKnown RBP20.35■□□□□ 0.85
CLN3-203ENST00000357806 CENPQQ7L2Z9 268 aaPredicted RBP20.35■□□□□ 0.85
CLN3-203ENST00000357806 SEC62Q99442 399 aaKnown RBP20.35■□□□□ 0.85
CLN3-203ENST00000357806 CFHR5Q9BXR6 569 aa20.35■□□□□ 0.85
CLN3-203ENST00000357806 GINM1Q9NU53 330 aa20.35■□□□□ 0.85
CLN3-203ENST00000357806 FRMD4AQ9P2Q2 1039 aaPredicted RBP20.35■□□□□ 0.85
CLN3-203ENST00000357806 TAOK2Q9UL54 1235 aa20.35■□□□□ 0.85
CLN3-203ENST00000357806 CXCL11O14625 94 aa20.34■□□□□ 0.85
CLN3-203ENST00000357806 GABPAQ06546 454 aa20.34■□□□□ 0.85
CLN3-203ENST00000357806 TATDN1Q6P1N9 297 aa20.34■□□□□ 0.85
CLN3-203ENST00000357806 GIMAP6Q6P9H5 292 aa20.34■□□□□ 0.85
CLN3-203ENST00000357806 PTPN18Q99952 460 aa20.34■□□□□ 0.85
CLN3-203ENST00000357806 AFG3L2Q9Y4W6 797 aa20.34■□□□□ 0.85
CLN3-203ENST00000357806 LAMA4Q16363 1823 aa20.33■□□□□ 0.85
CLN3-203ENST00000357806 GSG1L2A8MUP6 293 aa20.33■□□□□ 0.85
CLN3-203ENST00000357806 GDF11O95390 407 aa20.33■□□□□ 0.85
CLN3-203ENST00000357806 CYP2D6P10635 497 aa20.33■□□□□ 0.85
CLN3-203ENST00000357806 AS3MTQ9HBK9 375 aa20.33■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms