RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 MAP7D1Q3KQU3 841 aa8.25□□□□□ -1.09
VPS13A-202ENST00000357409 TTC6Q86TZ1 520 aa8.25□□□□□ -1.09
VPS13A-202ENST00000357409 FERMT1Q9BQL6 677 aa8.25□□□□□ -1.09
VPS13A-202ENST00000357409 MAP3K19Q56UN5 1328 aa8.25□□□□□ -1.09
VPS13A-202ENST00000357409 ABCC5O15440 1437 aa8.25□□□□□ -1.09
VPS13A-202ENST00000357409 TRIM75PA6NK02 468 aa8.25□□□□□ -1.09
VPS13A-202ENST00000357409 SPTLC2O15270 562 aa8.25□□□□□ -1.09
VPS13A-202ENST00000357409 HERC4Q5GLZ8 1057 aaPredicted RBP8.25□□□□□ -1.09
VPS13A-202ENST00000357409 SV2BQ7L1I2 683 aa8.25□□□□□ -1.09
VPS13A-202ENST00000357409 AZI2Q9H6S1 392 aa8.25□□□□□ -1.09
VPS13A-202ENST00000357409 C19orf44Q9H6X5 657 aa8.25□□□□□ -1.09
VPS13A-202ENST00000357409 DLATP10515 647 aaKnown RBP8.24□□□□□ -1.09
VPS13A-202ENST00000357409 SYT1P21579 422 aa8.24□□□□□ -1.09
VPS13A-202ENST00000357409 CDC25AP30304 524 aa8.24□□□□□ -1.09
VPS13A-202ENST00000357409 POLA2Q14181 598 aa8.24□□□□□ -1.09
VPS13A-202ENST00000357409 GPKOWQ92917 476 aaPredicted RBP eCLIP8.24□□□□□ -1.095e-9■■■□□ 17.4
VPS13A-202ENST00000357409 GPAA1O43292 621 aa8.24□□□□□ -1.09
VPS13A-202ENST00000357409 ZWINTO95229 277 aa8.24□□□□□ -1.09
VPS13A-202ENST00000357409 DENND2CQ68D51 928 aa8.24□□□□□ -1.09
VPS13A-202ENST00000357409 CCT6BQ92526 530 aa8.24□□□□□ -1.09
VPS13A-202ENST00000357409 ARHGEF10LQ9HCE6 1279 aa8.24□□□□□ -1.09
VPS13A-202ENST00000357409 FAM8A1Q9UBU6 413 aa8.24□□□□□ -1.09
VPS13A-202ENST00000357409 PSMA7O14818 248 aa8.24□□□□□ -1.09
VPS13A-202ENST00000357409 BUB1O43683 1085 aa8.24□□□□□ -1.09
VPS13A-202ENST00000357409 SPOPO43791 374 aa8.24□□□□□ -1.09
VPS13A-202ENST00000357409 GTPBP6O43824 516 aaPredicted RBP8.24□□□□□ -1.09
VPS13A-202ENST00000357409 HPDP32754 393 aaPredicted RBP8.24□□□□□ -1.09
VPS13A-202ENST00000357409 YARSP54577 528 aaKnown RBP8.24□□□□□ -1.09
VPS13A-202ENST00000357409 PRR16Q569H4 304 aa8.24□□□□□ -1.09
VPS13A-202ENST00000357409 ZNF513Q8N8E2 541 aaPredicted RBP8.24□□□□□ -1.09
VPS13A-202ENST00000357409 CCDC42Q96M95 316 aa8.24□□□□□ -1.09
VPS13A-202ENST00000357409 CARD14Q9BXL6 1004 aa8.24□□□□□ -1.09
VPS13A-202ENST00000357409 ZCWPW1Q9H0M4 648 aa8.24□□□□□ -1.09
VPS13A-202ENST00000357409 ANKFY1Q9P2R3 1169 aa8.24□□□□□ -1.09
VPS13A-202ENST00000357409 HSPA1LP34931 641 aa8.24□□□□□ -1.09
VPS13A-202ENST00000357409 BANK1Q8NDB2 785 aa8.24□□□□□ -1.09
VPS13A-202ENST00000357409 IQCEQ6IPM2 695 aa8.24□□□□□ -1.09
VPS13A-202ENST00000357409 NBPF3Q9H094 633 aa8.24□□□□□ -1.09
VPS13A-202ENST00000357409 RNF217Q8TC41 542 aa8.24□□□□□ -1.09
VPS13A-202ENST00000357409 EPSTI1Q96J88 318 aa8.24□□□□□ -1.09
VPS13A-202ENST00000357409 PTPRCP08575 1304 aa8.24□□□□□ -1.09
VPS13A-202ENST00000357409 CCDC66A2RUB6 948 aa8.24□□□□□ -1.09
VPS13A-202ENST00000357409 VAMP4O75379 141 aa8.24□□□□□ -1.09
VPS13A-202ENST00000357409 TXLNBQ8N3L3 684 aa8.24□□□□□ -1.09
VPS13A-202ENST00000357409 TMTC4Q5T4D3 741 aa8.23□□□□□ -1.09
VPS13A-202ENST00000357409 FAM204AQ9H8W3 233 aa8.23□□□□□ -1.09
VPS13A-202ENST00000357409 SFMBT1Q9UHJ3 866 aa8.23□□□□□ -1.09
VPS13A-202ENST00000357409 ERBB3P21860 1342 aa8.23□□□□□ -1.09
VPS13A-202ENST00000357409 M0QZ92 97 aa8.23□□□□□ -1.09
VPS13A-202ENST00000357409 CCDC155Q8N6L0 562 aa8.23□□□□□ -1.09
VPS13A-202ENST00000357409 ERMNQ8TAM6 284 aa8.23□□□□□ -1.09
VPS13A-202ENST00000357409 RIOK1Q9BRS2 568 aaKnown RBP8.23□□□□□ -1.09
VPS13A-202ENST00000357409 MRPL44Q9H9J2 332 aaKnown RBP8.23□□□□□ -1.09
VPS13A-202ENST00000357409 TAB2Q9NYJ8 693 aa8.23□□□□□ -1.09
VPS13A-202ENST00000357409 SEC23IPQ9Y6Y8 1000 aaKnown RBP8.23□□□□□ -1.09
VPS13A-202ENST00000357409 WDR44Q5JSH3 913 aa8.23□□□□□ -1.09
VPS13A-202ENST00000357409 ERLEC1Q96DZ1 483 aa8.23□□□□□ -1.09
VPS13A-202ENST00000357409 ZBED2Q9BTP6 218 aa8.23□□□□□ -1.09
VPS13A-202ENST00000357409 VPS18Q9P253 973 aa8.23□□□□□ -1.09
VPS13A-202ENST00000357409 DENND2AQ9ULE3 1009 aa8.23□□□□□ -1.09
VPS13A-202ENST00000357409 SKILP12757 684 aa8.23□□□□□ -1.09
VPS13A-202ENST00000357409 STX1AQ16623 288 aa8.23□□□□□ -1.09
VPS13A-202ENST00000357409 ALDH1L2Q3SY69 923 aa8.23□□□□□ -1.09
VPS13A-202ENST00000357409 NAA15Q9BXJ9 866 aaKnown RBP8.23□□□□□ -1.09
VPS13A-202ENST00000357409 PALD1Q9ULE6 856 aa8.23□□□□□ -1.09
VPS13A-202ENST00000357409 AKT3Q9Y243 479 aa8.23□□□□□ -1.09
VPS13A-202ENST00000357409 PPIP5K1Q6PFW1 1433 aa8.23□□□□□ -1.09
VPS13A-202ENST00000357409 PIK3R4Q99570 1358 aa8.23□□□□□ -1.09
VPS13A-202ENST00000357409 CAPN9O14815 690 aa8.23□□□□□ -1.09
VPS13A-202ENST00000357409 VIMP08670 466 aaKnown RBP8.23□□□□□ -1.09
VPS13A-202ENST00000357409 TBC1D8BQ0IIM8 1120 aa8.23□□□□□ -1.09
VPS13A-202ENST00000357409 ZNF394Q53GI3 561 aa8.23□□□□□ -1.09
VPS13A-202ENST00000357409 CEP85Q6P2H3 762 aa8.23□□□□□ -1.09
VPS13A-202ENST00000357409 CLIC6Q96NY7 704 aa8.23□□□□□ -1.09
VPS13A-202ENST00000357409 CPVLQ9H3G5 476 aa8.23□□□□□ -1.09
VPS13A-202ENST00000357409 SLAIN2Q9P270 581 aa8.23□□□□□ -1.09
VPS13A-202ENST00000357409 SPDYE2BA6NHP3 402 aa8.23□□□□□ -1.09
VPS13A-202ENST00000357409 FLOT1O75955 427 aa8.23□□□□□ -1.09
VPS13A-202ENST00000357409 SPDYE6P0CI01 402 aa8.23□□□□□ -1.09
VPS13A-202ENST00000357409 KIF5AQ12840 1032 aa8.23□□□□□ -1.09
VPS13A-202ENST00000357409 LRRC41Q15345 812 aa8.23□□□□□ -1.09
VPS13A-202ENST00000357409 SYNDIG1Q9H7V2 258 aa8.23□□□□□ -1.09
VPS13A-202ENST00000357409 ZBBXA8MT70 800 aa8.22□□□□□ -1.09
VPS13A-202ENST00000357409 FMNL1O95466 1100 aaPredicted RBP8.22□□□□□ -1.09
VPS13A-202ENST00000357409 CYLC1P35663 651 aaPredicted RBP8.22□□□□□ -1.09
VPS13A-202ENST00000357409 MYLK4Q86YV6 388 aaPredicted RBP8.22□□□□□ -1.09
VPS13A-202ENST00000357409 SELENOOQ9BVL4 669 aa8.22□□□□□ -1.09
VPS13A-202ENST00000357409 CLIC2O15247 247 aa8.22□□□□□ -1.09
VPS13A-202ENST00000357409 UPP2O95045 317 aa8.22□□□□□ -1.09
VPS13A-202ENST00000357409 U2AF2P26368 475 aaKnown RBP eCLIP8.22□□□□□ -1.091e-6■■□□□ 14.5
VPS13A-202ENST00000357409 MFSD14BQ5SR56 506 aa8.22□□□□□ -1.09
VPS13A-202ENST00000357409 ZNF496Q96IT1 587 aaPredicted RBP8.22□□□□□ -1.09
VPS13A-202ENST00000357409 FTOQ9C0B1 505 aaKnown RBP eCLIP8.22□□□□□ -1.09
VPS13A-202ENST00000357409 C14orf93Q9H972 538 aaKnown RBP8.22□□□□□ -1.09
VPS13A-202ENST00000357409 KIF4AO95239 1232 aa8.22□□□□□ -1.09
VPS13A-202ENST00000357409 XKR9Q5GH70 373 aa8.22□□□□□ -1.09
VPS13A-202ENST00000357409 TTC19Q6DKK2 380 aaPredicted RBP8.22□□□□□ -1.09
VPS13A-202ENST00000357409 COA7Q96BR5 231 aa8.22□□□□□ -1.09
VPS13A-202ENST00000357409 STX10O60499 249 aa8.22□□□□□ -1.09
VPS13A-202ENST00000357409 MCUQ8NE86 351 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms