RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 PPANQ9NQ55 473 aaKnown RBP21.83■■□□□ 1.09
CCDC88B-202ENST00000356786 SREK1Q8WXA9 508 aaKnown RBP21.83■■□□□ 1.08
CCDC88B-202ENST00000356786 PDE11AQ9HCR9 933 aa21.83■■□□□ 1.08
CCDC88B-202ENST00000356786 NDUFB9Q9Y6M9 179 aa21.83■■□□□ 1.08
CCDC88B-202ENST00000356786 PSDA5PKW4 1024 aaPredicted RBP21.82■■□□□ 1.08
CCDC88B-202ENST00000356786 CFAP221Q4G0U5 840 aa21.82■■□□□ 1.08
CCDC88B-202ENST00000356786 CACTINQ8WUQ7 758 aaKnown RBP21.82■■□□□ 1.08
CCDC88B-202ENST00000356786 FEZ2Q9UHY8 353 aaPredicted RBP21.82■■□□□ 1.08
CCDC88B-202ENST00000356786 UTP11Q9Y3A2 253 aaKnown RBP21.82■■□□□ 1.08
CCDC88B-202ENST00000356786 MAP3K5Q99683 1374 aa21.82■■□□□ 1.08
CCDC88B-202ENST00000356786 KBTBD3Q8NAB2 608 aa21.82■■□□□ 1.08
CCDC88B-202ENST00000356786 SYNCQ9H7C4 482 aa21.82■■□□□ 1.08
CCDC88B-202ENST00000356786 PFKFB1P16118 471 aa21.82■■□□□ 1.08
CCDC88B-202ENST00000356786 FERMT1Q9BQL6 677 aa21.82■■□□□ 1.08
CCDC88B-202ENST00000356786 DDX21Q9NR30 783 aaKnown RBP eCLIP21.82■■□□□ 1.08
CCDC88B-202ENST00000356786 TPCN1Q9ULQ1 816 aa21.82■■□□□ 1.08
CCDC88B-202ENST00000356786 PTPRTO14522 1441 aa21.82■■□□□ 1.08
CCDC88B-202ENST00000356786 ERCC6L2Q5T890 1561 aa21.82■■□□□ 1.08
CCDC88B-202ENST00000356786 MBD4O95243 580 aa21.82■■□□□ 1.08
CCDC88B-202ENST00000356786 ATP5DP30049 168 aa21.82■■□□□ 1.08
CCDC88B-202ENST00000356786 LETM2Q2VYF4 491 aa21.82■■□□□ 1.08
CCDC88B-202ENST00000356786 KRT71Q3SY84 523 aa21.82■■□□□ 1.08
CCDC88B-202ENST00000356786 DNAI2Q9GZS0 605 aa21.82■■□□□ 1.08
CCDC88B-202ENST00000356786 SEL1L2Q5TEA6 688 aa21.81■■□□□ 1.08
CCDC88B-202ENST00000356786 HLA-DOAP06340 250 aa21.81■■□□□ 1.08
CCDC88B-202ENST00000356786 CEP85LQ5SZL2 805 aa21.81■■□□□ 1.08
CCDC88B-202ENST00000356786 CACNA2D3Q8IZS8 1091 aa21.81■■□□□ 1.08
CCDC88B-202ENST00000356786 NFATC2IPQ8NCF5 419 aa21.81■■□□□ 1.08
CCDC88B-202ENST00000356786 MICAL1Q8TDZ2 1067 aa21.81■■□□□ 1.08
CCDC88B-202ENST00000356786 V9GY48 417 aaPredicted RBP21.81■■□□□ 1.08
CCDC88B-202ENST00000356786 VWA3BQ502W6 1294 aa21.81■■□□□ 1.08
CCDC88B-202ENST00000356786 PLEKHA4Q9H4M7 779 aa21.81■■□□□ 1.08
CCDC88B-202ENST00000356786 ZCCHC11Q5TAX3 1644 aaKnown RBP21.8■■□□□ 1.08
CCDC88B-202ENST00000356786 PTH1RQ03431 593 aa21.8■■□□□ 1.08
CCDC88B-202ENST00000356786 SF3B2Q13435 895 aaKnown RBP21.8■■□□□ 1.08
CCDC88B-202ENST00000356786 NEDD9Q14511 834 aa21.8■■□□□ 1.08
CCDC88B-202ENST00000356786 PIK3AP1Q6ZUJ8 805 aa21.8■■□□□ 1.08
CCDC88B-202ENST00000356786 APBB1IPQ7Z5R6 666 aaPredicted RBP21.8■■□□□ 1.08
CCDC88B-202ENST00000356786 TDRD7Q8NHU6 1098 aaKnown RBP21.8■■□□□ 1.08
CCDC88B-202ENST00000356786 ZNF526Q8TF50 670 aaPredicted RBP21.8■■□□□ 1.08
CCDC88B-202ENST00000356786 MED4Q9NPJ6 270 aa21.8■■□□□ 1.08
CCDC88B-202ENST00000356786 RABGGTAQ92696 567 aa21.8■■□□□ 1.08
CCDC88B-202ENST00000356786 MYL10Q9BUA6 226 aa21.8■■□□□ 1.08
CCDC88B-202ENST00000356786 PPFIA4O75335 1185 aa21.8■■□□□ 1.08
CCDC88B-202ENST00000356786 RRP36Q96EU6 259 aaKnown RBP21.8■■□□□ 1.08
CCDC88B-202ENST00000356786 MCM9Q9NXL9 1143 aa21.8■■□□□ 1.08
CCDC88B-202ENST00000356786 RPL13P26373 211 aaKnown RBP21.8■■□□□ 1.08
CCDC88B-202ENST00000356786 IL13P35225 146 aa21.8■■□□□ 1.08
CCDC88B-202ENST00000356786 LRRC59Q96AG4 307 aaKnown RBP21.8■■□□□ 1.08
CCDC88B-202ENST00000356786 CCDC51Q96ER9 411 aa21.8■■□□□ 1.08
CCDC88B-202ENST00000356786 ABCC4O15439 1325 aa21.8■■□□□ 1.08
CCDC88B-202ENST00000356786 SEC31AO94979 1220 aaKnown RBP21.79■■□□□ 1.08
CCDC88B-202ENST00000356786 ATP1A2P50993 1020 aa21.79■■□□□ 1.08
CCDC88B-202ENST00000356786 FANCLQ9NW38 375 aa21.79■■□□□ 1.08
CCDC88B-202ENST00000356786 ERBB4Q15303 1308 aa21.79■■□□□ 1.08
CCDC88B-202ENST00000356786 APPBP2Q92624 585 aa21.79■■□□□ 1.08
CCDC88B-202ENST00000356786 RPGRQ92834 1020 aaKnown RBP21.79■■□□□ 1.08
CCDC88B-202ENST00000356786 RBM28Q9NW13 759 aaKnown RBP21.79■■□□□ 1.08
CCDC88B-202ENST00000356786 SSH2Q76I76 1423 aa21.79■■□□□ 1.08
CCDC88B-202ENST00000356786 FAM13AO94988 1023 aa21.79■■□□□ 1.08
CCDC88B-202ENST00000356786 CNNM4Q6P4Q7 775 aa21.79■■□□□ 1.08
CCDC88B-202ENST00000356786 OR8K1Q8NGG5 319 aa21.79■■□□□ 1.08
CCDC88B-202ENST00000356786 FAM71BQ8TC56 605 aa21.79■■□□□ 1.08
CCDC88B-202ENST00000356786 SERTAD1Q9UHV2 236 aa21.79■■□□□ 1.08
CCDC88B-202ENST00000356786 RRP15Q9Y3B9 282 aaKnown RBP21.79■■□□□ 1.08
CCDC88B-202ENST00000356786 TSNAXIP1Q2TAA8 658 aa21.79■■□□□ 1.08
CCDC88B-202ENST00000356786 TTC38Q5R3I4 469 aa21.79■■□□□ 1.08
CCDC88B-202ENST00000356786 CAPS2Q9BXY5 557 aa21.79■■□□□ 1.08
CCDC88B-202ENST00000356786 GPAA1O43292 621 aa21.78■■□□□ 1.08
CCDC88B-202ENST00000356786 SPOPO43791 374 aa21.78■■□□□ 1.08
CCDC88B-202ENST00000356786 IFIH1Q9BYX4 1025 aaKnown RBP21.78■■□□□ 1.08
CCDC88B-202ENST00000356786 USP19O94966 1318 aa21.78■■□□□ 1.08
CCDC88B-202ENST00000356786 EYA2O00167 538 aa21.78■■□□□ 1.08
CCDC88B-202ENST00000356786 ERCC3P19447 782 aa21.78■■□□□ 1.08
CCDC88B-202ENST00000356786 GSTO1P78417 241 aa21.78■■□□□ 1.08
CCDC88B-202ENST00000356786 CCDC65Q8IXS2 484 aa21.78■■□□□ 1.08
CCDC88B-202ENST00000356786 MAP3K19Q56UN5 1328 aa21.78■■□□□ 1.08
CCDC88B-202ENST00000356786 ZSWIM6Q9HCJ5 1215 aa21.78■■□□□ 1.08
CCDC88B-202ENST00000356786 PPP1R13BQ96KQ4 1090 aa21.77■■□□□ 1.08
CCDC88B-202ENST00000356786 RGS12O14924 1447 aa21.77■■□□□ 1.08
CCDC88B-202ENST00000356786 NELFBQ8WX92 580 aa21.77■■□□□ 1.08
CCDC88B-202ENST00000356786 COMMD10Q9Y6G5 202 aa21.77■■□□□ 1.08
CCDC88B-202ENST00000356786 ZFYVE16Q7Z3T8 1539 aa21.77■■□□□ 1.08
CCDC88B-202ENST00000356786 KCNJ14Q9UNX9 436 aa21.77■■□□□ 1.08
CCDC88B-202ENST00000356786 GUCY2FP51841 1108 aa21.77■■□□□ 1.08
CCDC88B-202ENST00000356786 CCDC38Q502W7 563 aa21.77■■□□□ 1.08
CCDC88B-202ENST00000356786 TACO1Q9BSH4 297 aaKnown RBP21.77■■□□□ 1.08
CCDC88B-202ENST00000356786 GBP1P32455 592 aa21.76■■□□□ 1.07
CCDC88B-202ENST00000356786 CCT5P48643 541 aa21.76■■□□□ 1.07
CCDC88B-202ENST00000356786 CCDC97Q96F63 343 aaPredicted RBP21.76■■□□□ 1.07
CCDC88B-202ENST00000356786 TRPM2O94759 1503 aa21.76■■□□□ 1.07
CCDC88B-202ENST00000356786 RPS6KA1Q15418 735 aa21.76■■□□□ 1.07
CCDC88B-202ENST00000356786 EDC3Q96F86 508 aaKnown RBP21.76■■□□□ 1.07
CCDC88B-202ENST00000356786 CROCCP2Q86T23 111 aa21.76■■□□□ 1.07
CCDC88B-202ENST00000356786 ARHGEF2Q92974 986 aaKnown RBP21.76■■□□□ 1.07
CCDC88B-202ENST00000356786 ATP8B1O43520 1251 aa21.76■■□□□ 1.07
CCDC88B-202ENST00000356786 ATP2A2P16615 1042 aaKnown RBP21.76■■□□□ 1.07
CCDC88B-202ENST00000356786 PCDHA7Q9UN72 937 aa21.76■■□□□ 1.07
CCDC88B-202ENST00000356786 ADAMTS2O95450 1211 aa21.75■■□□□ 1.07
CCDC88B-202ENST00000356786 ZNF827Q17R98 1081 aa21.75■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms