RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 PPP2R5DQ14738 602 aa9.72□□□□□ -0.85
RTN3-202ENST00000339997 POSTNQ15063 836 aa9.72□□□□□ -0.85
RTN3-202ENST00000339997 E2F5Q15329 346 aa9.72□□□□□ -0.85
RTN3-202ENST00000339997 SECISBP2LQ93073 1101 aaKnown RBP9.72□□□□□ -0.85
RTN3-202ENST00000339997 ZCCHC17Q9NP64 241 aaKnown RBP9.72□□□□□ -0.85
RTN3-202ENST00000339997 RASAL2Q9UJF2 1139 aa9.72□□□□□ -0.85
RTN3-202ENST00000339997 TEX14Q8IWB6 1497 aa9.71□□□□□ -0.85
RTN3-202ENST00000339997 IRS4O14654 1257 aaPredicted RBP9.71□□□□□ -0.85
RTN3-202ENST00000339997 NLRP12P59046 1061 aa9.71□□□□□ -0.85
RTN3-202ENST00000339997 CYP26C1Q6V0L0 522 aa9.71□□□□□ -0.85
RTN3-202ENST00000339997 RRAGAQ7L523 313 aa9.71□□□□□ -0.85
RTN3-202ENST00000339997 DZIP3Q86Y13 1208 aaKnown RBP9.71□□□□□ -0.85
RTN3-202ENST00000339997 ANGEL1Q9UNK9 670 aaKnown RBP9.71□□□□□ -0.85
RTN3-202ENST00000339997 A0A1B0GUA9 196 aa9.71□□□□□ -0.85
RTN3-202ENST00000339997 PPP4R3AQ6IN85 833 aa9.71□□□□□ -0.85
RTN3-202ENST00000339997 INTS8Q75QN2 995 aaKnown RBP9.71□□□□□ -0.85
RTN3-202ENST00000339997 EAF2Q96CJ1 260 aaPredicted RBP9.71□□□□□ -0.85
RTN3-202ENST00000339997 DNAI2Q9GZS0 605 aa9.71□□□□□ -0.85
RTN3-202ENST00000339997 FAM114A2Q9NRY5 505 aa9.71□□□□□ -0.85
RTN3-202ENST00000339997 STIM2Q9P246 746 aa9.71□□□□□ -0.85
RTN3-202ENST00000339997 DNMT1P26358 1616 aaKnown RBP9.71□□□□□ -0.85
RTN3-202ENST00000339997 MAGI1Q96QZ7 1491 aaPredicted RBP9.71□□□□□ -0.86
RTN3-202ENST00000339997 RIMBP2O15034 1052 aa9.71□□□□□ -0.86
RTN3-202ENST00000339997 ABCB4P21439 1286 aa9.71□□□□□ -0.86
RTN3-202ENST00000339997 SETDB1Q15047 1291 aa9.71□□□□□ -0.86
RTN3-202ENST00000339997 SEPT14Q6ZU15 432 aa9.71□□□□□ -0.86
RTN3-202ENST00000339997 C11orf57Q6ZUT1 292 aaPredicted RBP9.71□□□□□ -0.86
RTN3-202ENST00000339997 FMNL3Q8IVF7 1028 aa9.71□□□□□ -0.86
RTN3-202ENST00000339997 PPP2R2CQ9Y2T4 447 aa9.71□□□□□ -0.86
RTN3-202ENST00000339997 A0A1W2PP64 1363 aa9.71□□□□□ -0.86
RTN3-202ENST00000339997 CEP85LQ5SZL2 805 aa9.71□□□□□ -0.86
RTN3-202ENST00000339997 ZNF354CQ86Y25 554 aa9.71□□□□□ -0.86
RTN3-202ENST00000339997 CFAP57Q96MR6 1250 aa9.71□□□□□ -0.86
RTN3-202ENST00000339997 MYO5CQ9NQX4 1742 aa9.7□□□□□ -0.86
RTN3-202ENST00000339997 CCNT1O60563 726 aaKnown RBP9.7□□□□□ -0.86
RTN3-202ENST00000339997 BMP15O95972 392 aa9.7□□□□□ -0.86
RTN3-202ENST00000339997 TUBB4AP04350 444 aa9.7□□□□□ -0.86
RTN3-202ENST00000339997 CLTAP09496 248 aa9.7□□□□□ -0.86
RTN3-202ENST00000339997 ZAP70P43403 619 aa9.7□□□□□ -0.86
RTN3-202ENST00000339997 SESN3P58005 492 aa9.7□□□□□ -0.86
RTN3-202ENST00000339997 LACTBP83111 547 aaPredicted RBP9.7□□□□□ -0.86
RTN3-202ENST00000339997 DPCR1Q3MIW9 517 aa9.7□□□□□ -0.86
RTN3-202ENST00000339997 RILPL1Q5EBL4 403 aa9.7□□□□□ -0.86
RTN3-202ENST00000339997 MYSM1Q5VVJ2 828 aa9.7□□□□□ -0.86
RTN3-202ENST00000339997 PPP1R21Q6ZMI0 780 aa9.7□□□□□ -0.86
RTN3-202ENST00000339997 SMARCC2Q8TAQ2 1214 aa9.7□□□□□ -0.86
RTN3-202ENST00000339997 PYM1Q9BRP8 204 aaKnown RBP9.7□□□□□ -0.86
RTN3-202ENST00000339997 PLVAPQ9BX97 442 aa9.7□□□□□ -0.86
RTN3-202ENST00000339997 PCDHA7Q9UN72 937 aa9.7□□□□□ -0.86
RTN3-202ENST00000339997 BTBD18B2RXH4 712 aa9.7□□□□□ -0.86
RTN3-202ENST00000339997 HSPA1LP34931 641 aa9.7□□□□□ -0.86
RTN3-202ENST00000339997 PAK1Q13153 545 aa9.7□□□□□ -0.86
RTN3-202ENST00000339997 GRAMD1CQ8IYS0 662 aa9.7□□□□□ -0.86
RTN3-202ENST00000339997 DPH5Q9H2P9 285 aa9.7□□□□□ -0.86
RTN3-202ENST00000339997 C6orf50Q9HD87 102 aa9.7□□□□□ -0.86
RTN3-202ENST00000339997 TTF2Q9UNY4 1162 aaKnown RBP9.7□□□□□ -0.86
RTN3-202ENST00000339997 CLIC4Q9Y696 253 aa9.7□□□□□ -0.86
RTN3-202ENST00000339997 TXNDC9O14530 226 aa9.7□□□□□ -0.86
RTN3-202ENST00000339997 FAM13AO94988 1023 aa9.7□□□□□ -0.86
RTN3-202ENST00000339997 CDC25AP30304 524 aa9.7□□□□□ -0.86
RTN3-202ENST00000339997 CXCR5P32302 372 aa9.7□□□□□ -0.86
RTN3-202ENST00000339997 HS2ST1Q7LGA3 356 aa9.7□□□□□ -0.86
RTN3-202ENST00000339997 USP44Q9H0E7 712 aa9.7□□□□□ -0.86
RTN3-202ENST00000339997 MTRF1LQ9UGC7 380 aaKnown RBP9.7□□□□□ -0.86
RTN3-202ENST00000339997 PRAG1Q86YV5 1406 aa9.7□□□□□ -0.86
RTN3-202ENST00000339997 TTC21AQ8NDW8 1320 aa9.7□□□□□ -0.86
RTN3-202ENST00000339997 IFNAR2P48551 515 aa9.7□□□□□ -0.86
RTN3-202ENST00000339997 CCDC152Q4G0S7 254 aa9.7□□□□□ -0.86
RTN3-202ENST00000339997 HERC4Q5GLZ8 1057 aaPredicted RBP9.7□□□□□ -0.86
RTN3-202ENST00000339997 FAM47AQ5JRC9 791 aa9.7□□□□□ -0.86
RTN3-202ENST00000339997 XAGE2Q96GT9 111 aa9.7□□□□□ -0.86
RTN3-202ENST00000339997 NKIRAS1Q9NYS0 192 aa9.7□□□□□ -0.86
RTN3-202ENST00000339997 USTQ9Y2C2 406 aa9.7□□□□□ -0.86
RTN3-202ENST00000339997 SAR1BQ9Y6B6 198 aa9.7□□□□□ -0.86
RTN3-202ENST00000339997 BICDL2A1A5D9 508 aa9.69□□□□□ -0.86
RTN3-202ENST00000339997 E7EWF7 191 aa9.69□□□□□ -0.86
RTN3-202ENST00000339997 DMTNQ08495 405 aa9.69□□□□□ -0.86
RTN3-202ENST00000339997 B4GALNT4Q76KP1 1039 aa9.69□□□□□ -0.86
RTN3-202ENST00000339997 ERMNQ8TAM6 284 aa9.69□□□□□ -0.86
RTN3-202ENST00000339997 NELFBQ8WX92 580 aa9.69□□□□□ -0.86
RTN3-202ENST00000339997 ASIC3Q9UHC3 531 aa9.69□□□□□ -0.86
RTN3-202ENST00000339997 LDHCP07864 332 aa9.69□□□□□ -0.86
RTN3-202ENST00000339997 KRT5P13647 590 aa9.69□□□□□ -0.86
RTN3-202ENST00000339997 ATP6V1AP38606 617 aa9.69□□□□□ -0.86
RTN3-202ENST00000339997 DDX17Q92841 729 aaKnown RBP9.69□□□□□ -0.86
RTN3-202ENST00000339997 SIRT1Q96EB6 747 aa9.69□□□□□ -0.86
RTN3-202ENST00000339997 IFIH1Q9BYX4 1025 aaKnown RBP9.69□□□□□ -0.86
RTN3-202ENST00000339997 GJB4Q9NTQ9 266 aa9.69□□□□□ -0.86
RTN3-202ENST00000339997 FAN1Q9Y2M0 1017 aa9.69□□□□□ -0.86
RTN3-202ENST00000339997 RALGAPBQ86X10 1494 aa9.69□□□□□ -0.86
RTN3-202ENST00000339997 LARGE1O95461 756 aa9.69□□□□□ -0.86
RTN3-202ENST00000339997 ZYXQ15942 572 aaKnown RBP9.69□□□□□ -0.86
RTN3-202ENST00000339997 ARHGAP44Q17R89 818 aa9.69□□□□□ -0.86
RTN3-202ENST00000339997 SLC9C1Q4G0N8 1177 aa9.69□□□□□ -0.86
RTN3-202ENST00000339997 SV2BQ7L1I2 683 aa9.69□□□□□ -0.86
RTN3-202ENST00000339997 SDAD1Q9NVU7 687 aaKnown RBP eCLIP9.69□□□□□ -0.86
RTN3-202ENST00000339997 MRC2Q9UBG0 1479 aa9.69□□□□□ -0.86
RTN3-202ENST00000339997 PABPN1LA6NDY0 278 aaKnown RBP9.68□□□□□ -0.86
RTN3-202ENST00000339997 AKAP4Q5JQC9 854 aa9.68□□□□□ -0.86
RTN3-202ENST00000339997 TTC38Q5R3I4 469 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms