RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 MAP3K10Q02779 954 aa6.46□□□□□ -1.37
CSDE1-202ENST00000339438 PDS5AQ29RF7 1337 aaKnown RBP6.46□□□□□ -1.37
CSDE1-202ENST00000339438 GOLGA6L1Q8N7Z2 621 aa6.46□□□□□ -1.37
CSDE1-202ENST00000339438 USP44Q9H0E7 712 aa6.46□□□□□ -1.37
CSDE1-202ENST00000339438 ANKZF1Q9H8Y5 726 aa6.46□□□□□ -1.37
CSDE1-202ENST00000339438 TSPYL4Q9UJ04 414 aa6.46□□□□□ -1.37
CSDE1-202ENST00000339438 LIMCH1Q9UPQ0 1083 aa6.46□□□□□ -1.37
CSDE1-202ENST00000339438 VWA3AA6NCI4 1184 aa6.46□□□□□ -1.38
CSDE1-202ENST00000339438 TUBB4AP04350 444 aa6.46□□□□□ -1.38
CSDE1-202ENST00000339438 PCCAP05165 728 aaPredicted RBP6.46□□□□□ -1.38
CSDE1-202ENST00000339438 HNRNPH1P31943 449 aaKnown RBP6.46□□□□□ -1.38
CSDE1-202ENST00000339438 TRDNQ13061 729 aa6.46□□□□□ -1.38
CSDE1-202ENST00000339438 LONRF2Q1L5Z9 754 aa6.46□□□□□ -1.38
CSDE1-202ENST00000339438 LRRFIP1Q32MZ4 808 aaKnown RBP6.46□□□□□ -1.38
CSDE1-202ENST00000339438 MNS1Q8NEH6 495 aa6.46□□□□□ -1.38
CSDE1-202ENST00000339438 MEIS3Q99687 375 aa6.46□□□□□ -1.38
CSDE1-202ENST00000339438 CARD6Q9BX69 1037 aa6.46□□□□□ -1.38
CSDE1-202ENST00000339438 SPON1Q9HCB6 807 aa6.46□□□□□ -1.38
CSDE1-202ENST00000339438 DDX19AQ9NUU7 478 aaKnown RBP6.46□□□□□ -1.38
CSDE1-202ENST00000339438 IMPACTQ9P2X3 320 aa6.46□□□□□ -1.38
CSDE1-202ENST00000339438 ATP6V1DQ9Y5K8 247 aa6.46□□□□□ -1.38
CSDE1-202ENST00000339438 MRFAP1Q9Y605 127 aa6.46□□□□□ -1.38
CSDE1-202ENST00000339438 ZNFX1Q9P2E3 1918 aaKnown RBP6.46□□□□□ -1.38
CSDE1-202ENST00000339438 PPP1R12AO14974 1030 aaPredicted RBP6.46□□□□□ -1.38
CSDE1-202ENST00000339438 CAVIN2O95810 425 aa6.46□□□□□ -1.38
CSDE1-202ENST00000339438 SCP2P22307 547 aa6.46□□□□□ -1.38
CSDE1-202ENST00000339438 MAP2K2P36507 400 aa6.46□□□□□ -1.38
CSDE1-202ENST00000339438 ERFEQ4G0M1 354 aa6.46□□□□□ -1.38
CSDE1-202ENST00000339438 HSP90AB3PQ58FF7 597 aa6.46□□□□□ -1.38
CSDE1-202ENST00000339438 LEO1Q8WVC0 666 aaPredicted RBP6.46□□□□□ -1.38
CSDE1-202ENST00000339438 UBXN4Q92575 508 aa6.46□□□□□ -1.38
CSDE1-202ENST00000339438 DEF6Q9H4E7 631 aa6.46□□□□□ -1.38
CSDE1-202ENST00000339438 DNAI1Q9UI46 699 aa6.46□□□□□ -1.38
CSDE1-202ENST00000339438 MED23Q9ULK4 1368 aa6.45□□□□□ -1.38
CSDE1-202ENST00000339438 AOX1Q06278 1338 aa6.45□□□□□ -1.38
CSDE1-202ENST00000339438 GNPATO15228 680 aa6.45□□□□□ -1.38
CSDE1-202ENST00000339438 ZBTB7AO95365 584 aa6.45□□□□□ -1.38
CSDE1-202ENST00000339438 CPA1P15085 419 aa6.45□□□□□ -1.38
CSDE1-202ENST00000339438 EVCP57679 992 aa6.45□□□□□ -1.38
CSDE1-202ENST00000339438 ZBTB38Q8NAP3 1195 aaPredicted RBP6.45□□□□□ -1.38
CSDE1-202ENST00000339438 MKRN1Q9UHC7 482 aaKnown RBP6.45□□□□□ -1.38
CSDE1-202ENST00000339438 RAB21Q9UL25 225 aa6.45□□□□□ -1.38
CSDE1-202ENST00000339438 L1RE1Q9UN81 338 aa6.45□□□□□ -1.38
CSDE1-202ENST00000339438 SH3BP1Q9Y3L3 701 aa6.45□□□□□ -1.38
CSDE1-202ENST00000339438 RIPOR2Q9Y4F9 1068 aa6.45□□□□□ -1.38
CSDE1-202ENST00000339438 CHD9Q3L8U1 2897 aa6.45□□□□□ -1.38
CSDE1-202ENST00000339438 COL4A6Q14031 1691 aa6.45□□□□□ -1.38
CSDE1-202ENST00000339438 A0A087WWV3 80 aa6.45□□□□□ -1.38
CSDE1-202ENST00000339438 PRPF6O94906 941 aaKnown RBP6.45□□□□□ -1.38
CSDE1-202ENST00000339438 ADD1P35611 737 aaKnown RBP6.45□□□□□ -1.38
CSDE1-202ENST00000339438 ME3Q16798 604 aa6.45□□□□□ -1.38
CSDE1-202ENST00000339438 NOM1Q5C9Z4 860 aaKnown RBP6.45□□□□□ -1.38
CSDE1-202ENST00000339438 SLC4A10Q6U841 1118 aa6.45□□□□□ -1.38
CSDE1-202ENST00000339438 NLGN1Q8N2Q7 840 aa6.45□□□□□ -1.38
CSDE1-202ENST00000339438 TBC1D22AQ8WUA7 517 aa6.45□□□□□ -1.38
CSDE1-202ENST00000339438 PDE11AQ9HCR9 933 aa6.45□□□□□ -1.38
CSDE1-202ENST00000339438 ANO2Q9NQ90 1003 aa6.45□□□□□ -1.38
CSDE1-202ENST00000339438 ARGLU1Q9NWB6 273 aaPredicted RBP6.45□□□□□ -1.38
CSDE1-202ENST00000339438 ZNF330Q9Y3S2 320 aaPredicted RBP6.45□□□□□ -1.38
CSDE1-202ENST00000339438 ANXA1P04083 346 aa6.45□□□□□ -1.38
CSDE1-202ENST00000339438 MMP10P09238 476 aa6.45□□□□□ -1.38
CSDE1-202ENST00000339438 FNTAP49354 379 aa6.45□□□□□ -1.38
CSDE1-202ENST00000339438 C1orf141Q5JVX7 400 aa6.45□□□□□ -1.38
CSDE1-202ENST00000339438 CCDC30Q5VVM6 783 aa6.45□□□□□ -1.38
CSDE1-202ENST00000339438 FAM43BQ6ZT52 329 aaPredicted RBP6.45□□□□□ -1.38
CSDE1-202ENST00000339438 API5Q9BZZ5 524 aaKnown RBP6.45□□□□□ -1.38
CSDE1-202ENST00000339438 A0A087WUV0 522 aaPredicted RBP6.44□□□□□ -1.38
CSDE1-202ENST00000339438 CCDC151A5D8V7 595 aa6.44□□□□□ -1.38
CSDE1-202ENST00000339438 KLHL33A6NCF5 533 aa6.44□□□□□ -1.38
CSDE1-202ENST00000339438 SHOX2O60902 331 aaPredicted RBP6.44□□□□□ -1.38
CSDE1-202ENST00000339438 RTN2O75298 545 aa6.44□□□□□ -1.38
CSDE1-202ENST00000339438 PIP4K2AP48426 406 aaPredicted RBP6.44□□□□□ -1.38
CSDE1-202ENST00000339438 MAP2K1Q02750 393 aaPredicted RBP6.44□□□□□ -1.38
CSDE1-202ENST00000339438 TEFQ10587 303 aa6.44□□□□□ -1.38
CSDE1-202ENST00000339438 TWISTNBQ3B726 338 aaPredicted RBP6.44□□□□□ -1.38
CSDE1-202ENST00000339438 ADCK5Q3MIX3 580 aa6.44□□□□□ -1.38
CSDE1-202ENST00000339438 JMYQ8N9B5 988 aa6.44□□□□□ -1.38
CSDE1-202ENST00000339438 ANKRD20A12PQ8NF67 263 aa6.44□□□□□ -1.38
CSDE1-202ENST00000339438 ENGASEQ8NFI3 743 aa6.44□□□□□ -1.38
CSDE1-202ENST00000339438 TTLL11Q8NHH1 800 aa6.44□□□□□ -1.38
CSDE1-202ENST00000339438 MIEF2Q96C03 454 aa6.44□□□□□ -1.38
CSDE1-202ENST00000339438 CPLX2Q6PUV4 134 aaKnown RBP6.44□□□□□ -1.38
CSDE1-202ENST00000339438 STAG1Q8WVM7 1258 aa6.44□□□□□ -1.38
CSDE1-202ENST00000339438 RABGGTAQ92696 567 aa6.44□□□□□ -1.38
CSDE1-202ENST00000339438 WDR24Q96S15 920 aa6.44□□□□□ -1.38
CSDE1-202ENST00000339438 GOLPH3LQ9H4A5 285 aa6.44□□□□□ -1.38
CSDE1-202ENST00000339438 PLEKHA4Q9H4M7 779 aa6.44□□□□□ -1.38
CSDE1-202ENST00000339438 SUGCTQ9HAC7 445 aa6.44□□□□□ -1.38
CSDE1-202ENST00000339438 STK32BQ9NY57 414 aa6.44□□□□□ -1.38
CSDE1-202ENST00000339438 MCM8Q9UJA3 840 aa6.44□□□□□ -1.38
CSDE1-202ENST00000339438 FAN1Q9Y2M0 1017 aa6.44□□□□□ -1.38
CSDE1-202ENST00000339438 ITGBL1O95965 494 aaPredicted RBP6.44□□□□□ -1.38
CSDE1-202ENST00000339438 TPM1P09493 284 aa6.44□□□□□ -1.38
CSDE1-202ENST00000339438 GSDMDP57764 484 aa6.44□□□□□ -1.38
CSDE1-202ENST00000339438 TRAPPC3LQ5T215 181 aa6.44□□□□□ -1.38
CSDE1-202ENST00000339438 CCDC83Q8IWF9 413 aa6.44□□□□□ -1.38
CSDE1-202ENST00000339438 PRPF38AQ8NAV1 312 aaKnown RBP6.44□□□□□ -1.38
CSDE1-202ENST00000339438 PNKPQ96T60 521 aa6.44□□□□□ -1.38
CSDE1-202ENST00000339438 ARFGAP3Q9NP61 516 aa6.44□□□□□ -1.38
CSDE1-202ENST00000339438 CHMP3Q9Y3E7 222 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms