RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 NCKAP5LQ9HCH0 1330 aa14.06□□□□□ -0.16
SDC3-201ENST00000336798 PTPROQ16827 1216 aa14.06□□□□□ -0.16
SDC3-201ENST00000336798 BRAPQ7Z569 592 aa14.06□□□□□ -0.16
SDC3-201ENST00000336798 ELP1O95163 1332 aa14.06□□□□□ -0.16
SDC3-201ENST00000336798 PTPN23Q9H3S7 1636 aa14.06□□□□□ -0.16
SDC3-201ENST00000336798 NEDD9Q14511 834 aa14.06□□□□□ -0.16
SDC3-201ENST00000336798 BRDTQ58F21 947 aaPredicted RBP14.06□□□□□ -0.16
SDC3-201ENST00000336798 GSDMBQ8TAX9 411 aa14.06□□□□□ -0.16
SDC3-201ENST00000336798 SUDS3Q9H7L9 328 aaPredicted RBP14.06□□□□□ -0.16
SDC3-201ENST00000336798 CTTNBP2NLQ9P2B4 639 aa14.06□□□□□ -0.16
SDC3-201ENST00000336798 ASIC3Q9UHC3 531 aa14.06□□□□□ -0.16
SDC3-201ENST00000336798 GGA1Q9UJY5 639 aa14.06□□□□□ -0.16
SDC3-201ENST00000336798 NCOA1Q15788 1441 aa14.06□□□□□ -0.16
SDC3-201ENST00000336798 STK10O94804 968 aaKnown RBP14.06□□□□□ -0.16
SDC3-201ENST00000336798 SETSIPP0DME0 302 aa14.06□□□□□ -0.16
SDC3-201ENST00000336798 ARHGAP44Q17R89 818 aa14.06□□□□□ -0.16
SDC3-201ENST00000336798 CCDC170Q8IYT3 715 aa14.06□□□□□ -0.16
SDC3-201ENST00000336798 CSGALNACT2Q8N6G5 542 aa14.06□□□□□ -0.16
SDC3-201ENST00000336798 LINS1Q8NG48 757 aa14.06□□□□□ -0.16
SDC3-201ENST00000336798 AZI2Q9H6S1 392 aa14.06□□□□□ -0.16
SDC3-201ENST00000336798 IL16Q14005 1332 aa14.06□□□□□ -0.16
SDC3-201ENST00000336798 FYB2Q5VWT5 728 aa14.06□□□□□ -0.16
SDC3-201ENST00000336798 ARHGEF2Q92974 986 aaKnown RBP14.06□□□□□ -0.16
SDC3-201ENST00000336798 BEGAINQ9BUH8 593 aa14.06□□□□□ -0.16
SDC3-201ENST00000336798 ZBTB12Q9Y330 459 aaPredicted RBP14.06□□□□□ -0.16
SDC3-201ENST00000336798 PRPF6O94906 941 aaKnown RBP14.05□□□□□ -0.16
SDC3-201ENST00000336798 EVCP57679 992 aa14.05□□□□□ -0.16
SDC3-201ENST00000336798 LACTBP83111 547 aaPredicted RBP14.05□□□□□ -0.16
SDC3-201ENST00000336798 CNGA4Q8IV77 575 aa14.05□□□□□ -0.16
SDC3-201ENST00000336798 METTL13Q8N6R0 699 aa14.05□□□□□ -0.16
SDC3-201ENST00000336798 PHKBQ93100 1093 aa14.05□□□□□ -0.16
SDC3-201ENST00000336798 BLZF1Q9H2G9 400 aa14.05□□□□□ -0.16
SDC3-201ENST00000336798 NSD2O96028 1365 aa14.05□□□□□ -0.16
SDC3-201ENST00000336798 SPDYE16A6NNV3 312 aaPredicted RBP14.05□□□□□ -0.16
SDC3-201ENST00000336798 SPDYE2Q495Y8 402 aa14.05□□□□□ -0.16
SDC3-201ENST00000336798 C8orf74Q6P047 294 aa14.05□□□□□ -0.16
SDC3-201ENST00000336798 C4orf50Q6ZRC1 276 aa14.05□□□□□ -0.16
SDC3-201ENST00000336798 MAPKAPK5Q8IW41 473 aa14.05□□□□□ -0.16
SDC3-201ENST00000336798 MGARPQ8TDB4 240 aa14.05□□□□□ -0.16
SDC3-201ENST00000336798 STK32BQ9NY57 414 aa14.05□□□□□ -0.16
SDC3-201ENST00000336798 TNRQ92752 1358 aa14.05□□□□□ -0.16
SDC3-201ENST00000336798 MYL5Q02045 173 aa14.05□□□□□ -0.16
SDC3-201ENST00000336798 FAM173BQ6P4H8 233 aa14.05□□□□□ -0.16
SDC3-201ENST00000336798 PAGR1Q9BTK6 254 aa14.05□□□□□ -0.16
SDC3-201ENST00000336798 PPP1R12CQ9BZL4 782 aa14.05□□□□□ -0.16
SDC3-201ENST00000336798 TTC41PQ6P2S7 1318 aa14.05□□□□□ -0.16
SDC3-201ENST00000336798 CNNM4Q6P4Q7 775 aa14.05□□□□□ -0.16
SDC3-201ENST00000336798 POLKQ9UBT6 870 aa14.05□□□□□ -0.16
SDC3-201ENST00000336798 PLCD1P51178 756 aa14.05□□□□□ -0.16
SDC3-201ENST00000336798 SNX29Q8TEQ0 813 aa14.05□□□□□ -0.16
SDC3-201ENST00000336798 CSRNP2Q9H175 543 aa14.05□□□□□ -0.16
SDC3-201ENST00000336798 FAM184BQ9ULE4 1060 aa14.05□□□□□ -0.16
SDC3-201ENST00000336798 DPP8Q6V1X1 898 aaPredicted RBP14.04□□□□□ -0.16
SDC3-201ENST00000336798 PPFIBP2Q8ND30 876 aa14.04□□□□□ -0.16
SDC3-201ENST00000336798 MED10Q9BTT4 135 aa14.04□□□□□ -0.16
SDC3-201ENST00000336798 MRPL44Q9H9J2 332 aaKnown RBP14.04□□□□□ -0.16
SDC3-201ENST00000336798 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.04□□□□□ -0.16
SDC3-201ENST00000336798 CEP120Q8N960 986 aa14.04□□□□□ -0.16
SDC3-201ENST00000336798 TAB2Q9NYJ8 693 aa14.04□□□□□ -0.16
SDC3-201ENST00000336798 LPXNO60711 386 aa14.04□□□□□ -0.16
SDC3-201ENST00000336798 FAM47AQ5JRC9 791 aa14.04□□□□□ -0.16
SDC3-201ENST00000336798 TAB3Q8N5C8 712 aaPredicted RBP14.04□□□□□ -0.16
SDC3-201ENST00000336798 MIPOL1Q8TD10 442 aa14.04□□□□□ -0.16
SDC3-201ENST00000336798 TGFBRAP1Q8WUH2 860 aa14.04□□□□□ -0.16
SDC3-201ENST00000336798 XAGE2Q96GT9 111 aa14.04□□□□□ -0.16
SDC3-201ENST00000336798 SYNRGQ9UMZ2 1314 aa14.04□□□□□ -0.16
SDC3-201ENST00000336798 CEP104O60308 925 aa14.04□□□□□ -0.16
SDC3-201ENST00000336798 CHMLP26374 656 aa14.04□□□□□ -0.16
SDC3-201ENST00000336798 HDXQ7Z353 690 aa14.04□□□□□ -0.16
SDC3-201ENST00000336798 M0QZ92 97 aa14.04□□□□□ -0.16
SDC3-201ENST00000336798 RNMTO43148 476 aaKnown RBP14.04□□□□□ -0.16
SDC3-201ENST00000336798 HERC4Q5GLZ8 1057 aaPredicted RBP14.04□□□□□ -0.16
SDC3-201ENST00000336798 UBL4BQ8N7F7 174 aa14.04□□□□□ -0.16
SDC3-201ENST00000336798 ARHGAP45Q92619 1136 aa14.04□□□□□ -0.16
SDC3-201ENST00000336798 ST7Q9NRC1 585 aa14.04□□□□□ -0.16
SDC3-201ENST00000336798 TXNDC9O14530 226 aa14.03□□□□□ -0.16
SDC3-201ENST00000336798 ZBED4O75132 1171 aa14.03□□□□□ -0.16
SDC3-201ENST00000336798 CNGA1P29973 690 aa14.03□□□□□ -0.16
SDC3-201ENST00000336798 SLC1A4P43007 532 aa14.03□□□□□ -0.16
SDC3-201ENST00000336798 KCNJ14Q9UNX9 436 aa14.03□□□□□ -0.16
SDC3-201ENST00000336798 TOPBP1Q92547 1522 aa14.03□□□□□ -0.16
SDC3-201ENST00000336798 ATP11AP98196 1134 aa14.03□□□□□ -0.16
SDC3-201ENST00000336798 HAUS3Q68CZ6 603 aa14.03□□□□□ -0.16
SDC3-201ENST00000336798 NSMCE1Q8WV22 266 aa14.03□□□□□ -0.16
SDC3-201ENST00000336798 EXOC7Q9UPT5 735 aa14.03□□□□□ -0.16
SDC3-201ENST00000336798 EXOC3O60645 756 aa14.03□□□□□ -0.16
SDC3-201ENST00000336798 CCDC125Q86Z20 511 aa14.03□□□□□ -0.16
SDC3-201ENST00000336798 PRPF31Q8WWY3 499 aaKnown RBP14.03□□□□□ -0.16
SDC3-201ENST00000336798 RSRC1Q96IZ7 334 aaKnown RBP14.03□□□□□ -0.16
SDC3-201ENST00000336798 TPH2Q8IWU9 490 aa14.03□□□□□ -0.16
SDC3-201ENST00000336798 RIOK1Q9BRS2 568 aaKnown RBP14.03□□□□□ -0.16
SDC3-201ENST00000336798 KCNH3Q9ULD8 1083 aa14.03□□□□□ -0.16
SDC3-201ENST00000336798 DHX29Q7Z478 1369 aaKnown RBP14.03□□□□□ -0.16
SDC3-201ENST00000336798 TBC1D8O95759 1140 aa14.03□□□□□ -0.16
SDC3-201ENST00000336798 SESTD1Q86VW0 696 aa14.03□□□□□ -0.16
SDC3-201ENST00000336798 FEZ2Q9UHY8 353 aaPredicted RBP14.03□□□□□ -0.16
SDC3-201ENST00000336798 ZKSCAN5Q9Y2L8 839 aa14.03□□□□□ -0.16
SDC3-201ENST00000336798 MAP3K5Q99683 1374 aa14.03□□□□□ -0.16
SDC3-201ENST00000336798 DEXIO95424 95 aa14.02□□□□□ -0.16
SDC3-201ENST00000336798 RPS6KB1P23443 525 aa14.02□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms