RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 PNPLA7Q6ZV29 1317 aa7.82□□□□□ -1.16
SF3B1-201ENST00000335508 HOXA10P31260 410 aaPredicted RBP7.82□□□□□ -1.16
SF3B1-201ENST00000335508 STX1AQ16623 288 aa7.82□□□□□ -1.16
SF3B1-201ENST00000335508 HS2ST1Q7LGA3 356 aa7.82□□□□□ -1.16
SF3B1-201ENST00000335508 FAM43AQ8N2R8 423 aa7.82□□□□□ -1.16
SF3B1-201ENST00000335508 TGFBRAP1Q8WUH2 860 aa7.82□□□□□ -1.16
SF3B1-201ENST00000335508 CSADQ9Y600 493 aa7.82□□□□□ -1.16
SF3B1-201ENST00000335508 TBCAO75347 108 aaKnown RBP7.82□□□□□ -1.16
SF3B1-201ENST00000335508 USP17L8P0C7I0 530 aa7.82□□□□□ -1.16
SF3B1-201ENST00000335508 FDX1P10109 184 aa7.82□□□□□ -1.16
SF3B1-201ENST00000335508 BRDTQ58F21 947 aaPredicted RBP7.82□□□□□ -1.16
SF3B1-201ENST00000335508 CT47A1Q5JQC4 288 aaPredicted RBP7.82□□□□□ -1.16
SF3B1-201ENST00000335508 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.82□□□□□ -1.16
SF3B1-201ENST00000335508 DTHD1Q6ZMT9 781 aa7.82□□□□□ -1.16
SF3B1-201ENST00000335508 FAM114A1Q8IWE2 563 aa7.82□□□□□ -1.16
SF3B1-201ENST00000335508 ICA1Q05084 483 aa7.82□□□□□ -1.16
SF3B1-201ENST00000335508 GPR162Q16538 588 aa7.82□□□□□ -1.16
SF3B1-201ENST00000335508 FKBP15Q5T1M5 1219 aa7.82□□□□□ -1.16
SF3B1-201ENST00000335508 HAUS3Q68CZ6 603 aa7.82□□□□□ -1.16
SF3B1-201ENST00000335508 MSL1Q68DK7 614 aa7.82□□□□□ -1.16
SF3B1-201ENST00000335508 SYCE3A1L190 88 aa7.82□□□□□ -1.16
SF3B1-201ENST00000335508 SYCP1Q15431 976 aa7.82□□□□□ -1.16
SF3B1-201ENST00000335508 JAG2Q9Y219 1238 aa7.82□□□□□ -1.16
SF3B1-201ENST00000335508 GJA3Q9Y6H8 435 aa7.82□□□□□ -1.16
SF3B1-201ENST00000335508 USP17L3A6NCW0 530 aa7.81□□□□□ -1.16
SF3B1-201ENST00000335508 USP17L4A6NCW7 530 aa7.81□□□□□ -1.16
SF3B1-201ENST00000335508 GSDMDP57764 484 aa7.81□□□□□ -1.16
SF3B1-201ENST00000335508 USP17L1Q7RTZ2 530 aa7.81□□□□□ -1.16
SF3B1-201ENST00000335508 FILIP1Q7Z7B0 1213 aa7.81□□□□□ -1.16
SF3B1-201ENST00000335508 USP25Q9UHP3 1055 aa7.81□□□□□ -1.16
SF3B1-201ENST00000335508 ARID4AP29374 1257 aaPredicted RBP7.81□□□□□ -1.16
SF3B1-201ENST00000335508 KRT2P35908 639 aa7.81□□□□□ -1.16
SF3B1-201ENST00000335508 PTH1RQ03431 593 aa7.81□□□□□ -1.16
SF3B1-201ENST00000335508 TEX2Q8IWB9 1127 aa7.81□□□□□ -1.16
SF3B1-201ENST00000335508 CCDC144CPQ8IYA2 1237 aa7.81□□□□□ -1.16
SF3B1-201ENST00000335508 PDCL3Q9H2J4 239 aa7.81□□□□□ -1.16
SF3B1-201ENST00000335508 NDUFB9Q9Y6M9 179 aa7.81□□□□□ -1.16
SF3B1-201ENST00000335508 IVNS1ABPQ9Y6Y0 642 aa7.81□□□□□ -1.16
SF3B1-201ENST00000335508 RDXP35241 583 aaKnown RBP7.81□□□□□ -1.16
SF3B1-201ENST00000335508 ANO1Q5XXA6 986 aa7.81□□□□□ -1.16
SF3B1-201ENST00000335508 FAM84BQ96KN1 310 aaPredicted RBP7.81□□□□□ -1.16
SF3B1-201ENST00000335508 TMOD4Q9NZQ9 345 aa7.81□□□□□ -1.16
SF3B1-201ENST00000335508 DNM1Q05193 864 aaKnown RBP7.81□□□□□ -1.16
SF3B1-201ENST00000335508 ANTXR1Q9H6X2 564 aa7.81□□□□□ -1.16
SF3B1-201ENST00000335508 TLR7Q9NYK1 1049 aaKnown RBP7.81□□□□□ -1.16
SF3B1-201ENST00000335508 MEGF6O75095 1541 aa7.81□□□□□ -1.16
SF3B1-201ENST00000335508 COL3A1P02461 1466 aaPredicted RBP7.81□□□□□ -1.16
SF3B1-201ENST00000335508 KLRF2D3W0D1 207 aa7.81□□□□□ -1.16
SF3B1-201ENST00000335508 MCAMP43121 646 aa7.81□□□□□ -1.16
SF3B1-201ENST00000335508 RFX5P48382 616 aaPredicted RBP7.81□□□□□ -1.16
SF3B1-201ENST00000335508 TMEM132AQ24JP5 1023 aa7.81□□□□□ -1.16
SF3B1-201ENST00000335508 ASPRV1Q53RT3 343 aa7.81□□□□□ -1.16
SF3B1-201ENST00000335508 TNS2Q63HR2 1409 aa7.81□□□□□ -1.16
SF3B1-201ENST00000335508 FMNL3Q8IVF7 1028 aa7.81□□□□□ -1.16
SF3B1-201ENST00000335508 ZSCAN10Q96SZ4 725 aaPredicted RBP7.81□□□□□ -1.16
SF3B1-201ENST00000335508 SEC62Q99442 399 aaKnown RBP7.81□□□□□ -1.16
SF3B1-201ENST00000335508 LARP6Q9BRS8 491 aaKnown RBP7.81□□□□□ -1.16
SF3B1-201ENST00000335508 AMNQ9BXJ7 453 aa7.81□□□□□ -1.16
SF3B1-201ENST00000335508 GDPD2Q9HCC8 539 aa7.81□□□□□ -1.16
SF3B1-201ENST00000335508 CPA1P15085 419 aa7.8□□□□□ -1.16
SF3B1-201ENST00000335508 TRIM21P19474 475 aaKnown RBP7.8□□□□□ -1.16
SF3B1-201ENST00000335508 ATG9AQ7Z3C6 839 aa7.8□□□□□ -1.16
SF3B1-201ENST00000335508 CERKLQ49MI3 558 aaPredicted RBP7.8□□□□□ -1.16
SF3B1-201ENST00000335508 PALD1Q9ULE6 856 aa7.8□□□□□ -1.16
SF3B1-201ENST00000335508 CUTAO60888 179 aa7.8□□□□□ -1.16
SF3B1-201ENST00000335508 RBM10P98175 930 aaKnown RBP7.8□□□□□ -1.16
SF3B1-201ENST00000335508 FOXO4P98177 505 aa7.8□□□□□ -1.16
SF3B1-201ENST00000335508 CHST3Q7LGC8 479 aa7.8□□□□□ -1.16
SF3B1-201ENST00000335508 FBXO41Q8TF61 875 aa7.8□□□□□ -1.16
SF3B1-201ENST00000335508 GCFC2P16383 781 aaKnown RBP7.8□□□□□ -1.16
SF3B1-201ENST00000335508 RAB11FIP4Q86YS3 637 aa7.8□□□□□ -1.16
SF3B1-201ENST00000335508 IQSEC2Q5JU85 1478 aa7.8□□□□□ -1.16
SF3B1-201ENST00000335508 ADD1P35611 737 aaKnown RBP7.8□□□□□ -1.16
SF3B1-201ENST00000335508 TBC1D9BQ66K14 1250 aa7.8□□□□□ -1.16
SF3B1-201ENST00000335508 PI16Q6UXB8 463 aa7.8□□□□□ -1.16
SF3B1-201ENST00000335508 GOLGA6L1Q8N7Z2 621 aa7.8□□□□□ -1.16
SF3B1-201ENST00000335508 WWC3Q9ULE0 1092 aa7.8□□□□□ -1.16
SF3B1-201ENST00000335508 MED23Q9ULK4 1368 aa7.79□□□□□ -1.16
SF3B1-201ENST00000335508 STRIP1Q5VSL9 837 aa7.79□□□□□ -1.16
SF3B1-201ENST00000335508 SGMS1Q86VZ5 419 aa7.79□□□□□ -1.16
SF3B1-201ENST00000335508 HERC5Q9UII4 1024 aaKnown RBP7.79□□□□□ -1.16
SF3B1-201ENST00000335508 PPLO60437 1756 aa7.79□□□□□ -1.16
SF3B1-201ENST00000335508 ESPNB1AK53 854 aa7.79□□□□□ -1.16
SF3B1-201ENST00000335508 ZBED4O75132 1171 aa7.79□□□□□ -1.16
SF3B1-201ENST00000335508 ZSCAN30Q86W11 494 aa7.79□□□□□ -1.16
SF3B1-201ENST00000335508 NEDD1Q8NHV4 660 aa7.79□□□□□ -1.16
SF3B1-201ENST00000335508 CTAGE1Q96RT6 745 aa7.79□□□□□ -1.16
SF3B1-201ENST00000335508 CLIP2Q9UDT6 1046 aa7.79□□□□□ -1.16
SF3B1-201ENST00000335508 SCG2P13521 617 aa7.79□□□□□ -1.16
SF3B1-201ENST00000335508 PRDX5P30044 214 aa7.79□□□□□ -1.16
SF3B1-201ENST00000335508 HOXA7P31268 230 aaPredicted RBP7.79□□□□□ -1.16
SF3B1-201ENST00000335508 ADCY7P51828 1080 aa7.79□□□□□ -1.16
SF3B1-201ENST00000335508 GPS2Q13227 327 aa7.79□□□□□ -1.16
SF3B1-201ENST00000335508 RRAGBQ5VZM2 374 aa7.79□□□□□ -1.16
SF3B1-201ENST00000335508 SLFN13Q68D06 897 aa7.79□□□□□ -1.16
SF3B1-201ENST00000335508 CSRNP1Q96S65 589 aa7.79□□□□□ -1.16
SF3B1-201ENST00000335508 A0A1W2PQ27 194 aa7.79□□□□□ -1.16
SF3B1-201ENST00000335508 A0A1W2PQ64 194 aa7.79□□□□□ -1.16
SF3B1-201ENST00000335508 A0A1W2PQD8 194 aa7.79□□□□□ -1.16
SF3B1-201ENST00000335508 TUBB4AP04350 444 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms