RNA–Protein interactions for RNA: ENST00000316707.10

PTPN13-201, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 7,546 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-201ENST00000316707 INTS13Q9NVM9 706 aa5.41□□□□□ -1.54
PTPN13-201ENST00000316707 RMND1Q9NWS8 449 aa5.41□□□□□ -1.54
PTPN13-201ENST00000316707 TMEM94Q12767 1356 aa5.41□□□□□ -1.54
PTPN13-201ENST00000316707 INPP5BP32019 993 aa5.4□□□□□ -1.54
PTPN13-201ENST00000316707 CYLC1P35663 651 aaPredicted RBP5.4□□□□□ -1.54
PTPN13-201ENST00000316707 TTF1Q15361 905 aaPredicted RBP5.4□□□□□ -1.54
PTPN13-201ENST00000316707 PROSER3Q2NL68 480 aa5.4□□□□□ -1.54
PTPN13-201ENST00000316707 SPATA20Q8TB22 786 aa5.4□□□□□ -1.54
PTPN13-201ENST00000316707 STAG1Q8WVM7 1258 aa5.4□□□□□ -1.54
PTPN13-201ENST00000316707 CNNM2Q9H8M5 875 aa5.4□□□□□ -1.54
PTPN13-201ENST00000316707 ADD3Q9UEY8 706 aaKnown RBP5.4□□□□□ -1.54
PTPN13-201ENST00000316707 MYO6Q9UM54 1294 aa5.4□□□□□ -1.54
PTPN13-201ENST00000316707 SAR1BQ9Y6B6 198 aa5.4□□□□□ -1.54
PTPN13-201ENST00000316707 GOLGA8KD6RF30 607 aa5.4□□□□□ -1.54
PTPN13-201ENST00000316707 H0YHG0 523 aa5.4□□□□□ -1.54
PTPN13-201ENST00000316707 MAP2K2P36507 400 aa5.4□□□□□ -1.54
PTPN13-201ENST00000316707 LONRF3Q496Y0 759 aa5.4□□□□□ -1.54
PTPN13-201ENST00000316707 EMBQ6PCB8 327 aa5.4□□□□□ -1.54
PTPN13-201ENST00000316707 GOLGA6CA6NDK9 693 aa5.4□□□□□ -1.54
PTPN13-201ENST00000316707 RHOXF2BP0C7M4 288 aa5.4□□□□□ -1.54
PTPN13-201ENST00000316707 GOLGA6DP0CG33 693 aa5.4□□□□□ -1.54
PTPN13-201ENST00000316707 CDKAL1Q5VV42 579 aa5.4□□□□□ -1.54
PTPN13-201ENST00000316707 TMED8Q6PL24 325 aaPredicted RBP5.4□□□□□ -1.54
PTPN13-201ENST00000316707 MICALL1Q8N3F8 863 aa5.4□□□□□ -1.54
PTPN13-201ENST00000316707 RAPGEF4Q8WZA2 1011 aa5.4□□□□□ -1.54
PTPN13-201ENST00000316707 RHOXF2Q9BQY4 288 aa5.4□□□□□ -1.54
PTPN13-201ENST00000316707 GNL3Q9BVP2 549 aaKnown RBP eCLIP5.4□□□□□ -1.54
PTPN13-201ENST00000316707 GOLGA6AQ9NYA3 693 aa5.4□□□□□ -1.54
PTPN13-201ENST00000316707 CEP170BQ9Y4F5 1589 aaPredicted RBP5.4□□□□□ -1.54
PTPN13-201ENST00000316707 CPDO75976 1380 aa5.4□□□□□ -1.54
PTPN13-201ENST00000316707 TRIM75PA6NK02 468 aa5.4□□□□□ -1.55
PTPN13-201ENST00000316707 GOLGA8AA7E2F4 631 aa5.4□□□□□ -1.55
PTPN13-201ENST00000316707 FANCGO15287 622 aa5.4□□□□□ -1.55
PTPN13-201ENST00000316707 MMP14P50281 582 aa5.4□□□□□ -1.55
PTPN13-201ENST00000316707 APOA5Q6Q788 366 aa5.4□□□□□ -1.55
PTPN13-201ENST00000316707 RAD9BQ6WBX8 426 aa5.4□□□□□ -1.55
PTPN13-201ENST00000316707 NFXL1Q6ZNB6 911 aa5.4□□□□□ -1.55
PTPN13-201ENST00000316707 DIS3L2Q8IYB7 885 aaKnown RBP5.4□□□□□ -1.55
PTPN13-201ENST00000316707 SLC35F6Q8N357 371 aa5.4□□□□□ -1.55
PTPN13-201ENST00000316707 RETREG2Q8NC44 543 aa5.4□□□□□ -1.55
PTPN13-201ENST00000316707 OR8K1Q8NGG5 319 aa5.4□□□□□ -1.55
PTPN13-201ENST00000316707 PLBD2Q8NHP8 589 aa5.4□□□□□ -1.55
PTPN13-201ENST00000316707 KLHDC4Q8TBB5 520 aa5.4□□□□□ -1.55
PTPN13-201ENST00000316707 EPC1Q9H2F5 836 aa5.4□□□□□ -1.55
PTPN13-201ENST00000316707 LUC7L2Q9Y383 392 aaKnown RBP5.4□□□□□ -1.55
PTPN13-201ENST00000316707 C3P01024 1663 aa5.4□□□□□ -1.55
PTPN13-201ENST00000316707 PHACTR2O75167 634 aa5.4□□□□□ -1.55
PTPN13-201ENST00000316707 AKAP17AQ02040 695 aaKnown RBP5.4□□□□□ -1.55
PTPN13-201ENST00000316707 SSRP1Q08945 709 aaKnown RBP5.4□□□□□ -1.55
PTPN13-201ENST00000316707 MLECQ14165 292 aa5.4□□□□□ -1.55
PTPN13-201ENST00000316707 EPHA10Q5JZY3 1008 aa5.4□□□□□ -1.55
PTPN13-201ENST00000316707 ZNF790Q6PG37 636 aa5.4□□□□□ -1.55
PTPN13-201ENST00000316707 LRRC31Q6UY01 552 aa5.4□□□□□ -1.55
PTPN13-201ENST00000316707 ZNF662Q6ZS27 426 aa5.4□□□□□ -1.55
PTPN13-201ENST00000316707 NFATC2IPQ8NCF5 419 aa5.4□□□□□ -1.55
PTPN13-201ENST00000316707 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP5.4□□□□□ -1.55
PTPN13-201ENST00000316707 LCMT1Q9UIC8 334 aa5.4□□□□□ -1.55
PTPN13-201ENST00000316707 HPS5Q9UPZ3 1129 aa5.4□□□□□ -1.55
PTPN13-201ENST00000316707 TMEM232C9JQI7 657 aa5.4□□□□□ -1.55
PTPN13-201ENST00000316707 THEMISQ8N1K5 641 aaPredicted RBP5.4□□□□□ -1.55
PTPN13-201ENST00000316707 PNKPQ96T60 521 aa5.4□□□□□ -1.55
PTPN13-201ENST00000316707 RNF14Q9UBS8 474 aa5.4□□□□□ -1.55
PTPN13-201ENST00000316707 LIMA1Q9UHB6 759 aaKnown RBP5.4□□□□□ -1.55
PTPN13-201ENST00000316707 MAN1B1Q9UKM7 699 aa5.4□□□□□ -1.55
PTPN13-201ENST00000316707 SRPRBQ9Y5M8 271 aaKnown RBP5.4□□□□□ -1.55
PTPN13-201ENST00000316707 GOLGA6BA6NDN3 693 aa5.39□□□□□ -1.55
PTPN13-201ENST00000316707 H7C1W4 665 aa5.39□□□□□ -1.55
PTPN13-201ENST00000316707 RDXP35241 583 aaKnown RBP5.39□□□□□ -1.55
PTPN13-201ENST00000316707 PBX1P40424 430 aa5.39□□□□□ -1.55
PTPN13-201ENST00000316707 MRC1P22897 1456 aa5.39□□□□□ -1.55
PTPN13-201ENST00000316707 KIF28PB7ZC32 967 aa5.39□□□□□ -1.55
PTPN13-201ENST00000316707 SHOX2O60902 331 aaPredicted RBP5.39□□□□□ -1.55
PTPN13-201ENST00000316707 FGAP02671 866 aa5.39□□□□□ -1.55
PTPN13-201ENST00000316707 KRT9P35527 623 aa5.39□□□□□ -1.55
PTPN13-201ENST00000316707 PPP1R2P41236 205 aa5.39□□□□□ -1.55
PTPN13-201ENST00000316707 AMPD2Q01433 879 aa5.39□□□□□ -1.55
PTPN13-201ENST00000316707 MAPK8IP2Q13387 824 aaPredicted RBP5.39□□□□□ -1.55
PTPN13-201ENST00000316707 UBE3CQ15386 1083 aa5.39□□□□□ -1.55
PTPN13-201ENST00000316707 ALS2CLQ60I27 953 aa5.39□□□□□ -1.55
PTPN13-201ENST00000316707 FOXP4Q8IVH2 680 aaPredicted RBP5.39□□□□□ -1.55
PTPN13-201ENST00000316707 CCDC155Q8N6L0 562 aa5.39□□□□□ -1.55
PTPN13-201ENST00000316707 NOC3LQ8WTT2 800 aaKnown RBP5.39□□□□□ -1.55
PTPN13-201ENST00000316707 EPN1Q9Y6I3 576 aaPredicted RBP5.39□□□□□ -1.55
PTPN13-201ENST00000316707 MROH7-TTC4A0A0A0MT08 1334 aa5.39□□□□□ -1.55
PTPN13-201ENST00000316707 A0A1W2PQC6 194 aa5.39□□□□□ -1.55
PTPN13-201ENST00000316707 TMCO5BA8MYB1 307 aa5.39□□□□□ -1.55
PTPN13-201ENST00000316707 DEXIO95424 95 aa5.39□□□□□ -1.55
PTPN13-201ENST00000316707 CASP14P31944 242 aa5.39□□□□□ -1.55
PTPN13-201ENST00000316707 ISM2Q6H9L7 571 aa5.39□□□□□ -1.55
PTPN13-201ENST00000316707 YTHDF3Q7Z739 585 aaKnown RBP5.39□□□□□ -1.55
PTPN13-201ENST00000316707 PACS2Q86VP3 889 aa5.39□□□□□ -1.55
PTPN13-201ENST00000316707 CAGE1Q8TC20 777 aa5.39□□□□□ -1.55
PTPN13-201ENST00000316707 NUP88Q99567 741 aaPredicted RBP5.39□□□□□ -1.55
PTPN13-201ENST00000316707 AATFQ9NY61 560 aaKnown RBP eCLIP5.39□□□□□ -1.55
PTPN13-201ENST00000316707 SERTAD1Q9UHV2 236 aa5.39□□□□□ -1.55
PTPN13-201ENST00000316707 ATXN2Q99700 1313 aaKnown RBP5.39□□□□□ -1.55
PTPN13-201ENST00000316707 SYNRGQ9UMZ2 1314 aa5.39□□□□□ -1.55
PTPN13-201ENST00000316707 CDR1P51861 262 aa5.39□□□□□ -1.55
PTPN13-201ENST00000316707 GSCP56915 257 aaPredicted RBP5.39□□□□□ -1.55
PTPN13-201ENST00000316707 PDIA6Q15084 440 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms