RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 GIMAP6Q6P9H5 292 aa21.61■■□□□ 1.05
HMGA1-201ENST00000311487 DNAJC18Q9H819 358 aa21.61■■□□□ 1.05
HMGA1-201ENST00000311487 PI4KBQ9UBF8 816 aa21.61■■□□□ 1.05
HMGA1-201ENST00000311487 U3KPZ7 1027 aaPredicted RBP21.61■■□□□ 1.05
HMGA1-201ENST00000311487 RPAP1Q9BWH6 1393 aaPredicted RBP21.61■■□□□ 1.05
HMGA1-201ENST00000311487 ITGBL1O95965 494 aaPredicted RBP21.61■■□□□ 1.05
HMGA1-201ENST00000311487 HLA-DOAP06340 250 aa21.61■■□□□ 1.05
HMGA1-201ENST00000311487 ALX1Q15699 326 aa21.61■■□□□ 1.05
HMGA1-201ENST00000311487 CREB3L3Q68CJ9 461 aa21.61■■□□□ 1.05
HMGA1-201ENST00000311487 AMOTL1Q8IY63 956 aa21.61■■□□□ 1.05
HMGA1-201ENST00000311487 RASEFQ8IZ41 740 aa21.61■■□□□ 1.05
HMGA1-201ENST00000311487 TOMM22Q9NS69 142 aa21.61■■□□□ 1.05
HMGA1-201ENST00000311487 SLC27A2O14975 620 aa21.6■■□□□ 1.05
HMGA1-201ENST00000311487 NPM3O75607 178 aaKnown RBP21.6■■□□□ 1.05
HMGA1-201ENST00000311487 NECTIN1Q15223 517 aa21.6■■□□□ 1.05
HMGA1-201ENST00000311487 IMMTQ16891 758 aaKnown RBP21.6■■□□□ 1.05
HMGA1-201ENST00000311487 RRP12Q5JTH9 1297 aaKnown RBP21.6■■□□□ 1.05
HMGA1-201ENST00000311487 TTC6Q86TZ1 520 aa21.6■■□□□ 1.05
HMGA1-201ENST00000311487 DHX36Q9H2U1 1008 aaKnown RBP21.6■■□□□ 1.05
HMGA1-201ENST00000311487 XPO5Q9HAV4 1204 aaKnown RBP eCLIP21.6■■□□□ 1.05
HMGA1-201ENST00000311487 TRIM34Q9BYJ4 488 aa21.59■■□□□ 1.05
HMGA1-201ENST00000311487 FRMD4AQ9P2Q2 1039 aaPredicted RBP21.59■■□□□ 1.05
HMGA1-201ENST00000311487 CTNNA3Q9UI47 895 aa21.59■■□□□ 1.05
HMGA1-201ENST00000311487 SERPINB13Q9UIV8 391 aa21.59■■□□□ 1.05
HMGA1-201ENST00000311487 SSC5DA1L4H1 1573 aa21.59■■□□□ 1.05
HMGA1-201ENST00000311487 TTLL12Q14166 644 aaPredicted RBP21.59■■□□□ 1.05
HMGA1-201ENST00000311487 RRP1BQ14684 758 aaKnown RBP21.59■■□□□ 1.05
HMGA1-201ENST00000311487 SBK1Q52WX2 424 aa21.59■■□□□ 1.05
HMGA1-201ENST00000311487 DDX60LQ5H9U9 1706 aaKnown RBP21.58■■□□□ 1.05
HMGA1-201ENST00000311487 ATRNL1Q5VV63 1379 aa21.58■■□□□ 1.05
HMGA1-201ENST00000311487 TOMM70O94826 608 aa21.58■■□□□ 1.04
HMGA1-201ENST00000311487 CELF2O95319 508 aaKnown RBP21.58■■□□□ 1.04
HMGA1-201ENST00000311487 SIPA1L1O43166 1804 aa21.57■■□□□ 1.04
HMGA1-201ENST00000311487 CDK8P49336 464 aa21.57■■□□□ 1.04
HMGA1-201ENST00000311487 STOX1Q6ZVD7 989 aa21.57■■□□□ 1.04
HMGA1-201ENST00000311487 GDF11O95390 407 aa21.57■■□□□ 1.04
HMGA1-201ENST00000311487 FAM47AQ5JRC9 791 aa21.57■■□□□ 1.04
HMGA1-201ENST00000311487 SMC1BQ8NDV3 1235 aa21.57■■□□□ 1.04
HMGA1-201ENST00000311487 PPP2R3BQ9Y5P8 575 aa21.57■■□□□ 1.04
HMGA1-201ENST00000311487 NEDD4P46934 1319 aa21.56■■□□□ 1.04
HMGA1-201ENST00000311487 HSPA4P34932 840 aa21.56■■□□□ 1.04
HMGA1-201ENST00000311487 ADCK5Q3MIX3 580 aa21.56■■□□□ 1.04
HMGA1-201ENST00000311487 SUPT20HL1Q3ZLR7 823 aa21.56■■□□□ 1.04
HMGA1-201ENST00000311487 CST9Q5W186 159 aa21.56■■□□□ 1.04
HMGA1-201ENST00000311487 ZKSCAN4Q969J2 545 aaPredicted RBP21.56■■□□□ 1.04
HMGA1-201ENST00000311487 MKNK2Q9HBH9 465 aa21.56■■□□□ 1.04
HMGA1-201ENST00000311487 SHMT1P34896 483 aa21.55■■□□□ 1.04
HMGA1-201ENST00000311487 JAG1P78504 1218 aa21.55■■□□□ 1.04
HMGA1-201ENST00000311487 GABPAQ06546 454 aa21.55■■□□□ 1.04
HMGA1-201ENST00000311487 CHST3Q7LGC8 479 aa21.55■■□□□ 1.04
HMGA1-201ENST00000311487 ANGEL1Q9UNK9 670 aaKnown RBP21.55■■□□□ 1.04
HMGA1-201ENST00000311487 E7EWF7 191 aa21.55■■□□□ 1.04
HMGA1-201ENST00000311487 CPA1P15085 419 aa21.55■■□□□ 1.04
HMGA1-201ENST00000311487 INPP5BP32019 993 aa21.55■■□□□ 1.04
HMGA1-201ENST00000311487 MFSD6Q6ZSS7 791 aa21.55■■□□□ 1.04
HMGA1-201ENST00000311487 C16orf86Q6ZW13 317 aa21.55■■□□□ 1.04
HMGA1-201ENST00000311487 CCDC84Q86UT8 332 aaPredicted RBP21.55■■□□□ 1.04
HMGA1-201ENST00000311487 FOXP4Q8IVH2 680 aaPredicted RBP21.55■■□□□ 1.04
HMGA1-201ENST00000311487 ZMYM6O95789 1325 aa21.54■■□□□ 1.04
HMGA1-201ENST00000311487 UBE2Q2LH0YL09 131 aa21.54■■□□□ 1.04
HMGA1-201ENST00000311487 MPHOSPH10O00566 681 aaKnown RBP21.54■■□□□ 1.04
HMGA1-201ENST00000311487 USP2O75604 605 aaPredicted RBP21.54■■□□□ 1.04
HMGA1-201ENST00000311487 AKNAD1Q5T1N1 836 aa21.54■■□□□ 1.04
HMGA1-201ENST00000311487 WRNIP1Q96S55 665 aa21.54■■□□□ 1.04
HMGA1-201ENST00000311487 SNX14Q9Y5W7 946 aa21.54■■□□□ 1.04
HMGA1-201ENST00000311487 B4E1Z4 1266 aa21.53■■□□□ 1.04
HMGA1-201ENST00000311487 RANBP6O60518 1105 aaKnown RBP21.53■■□□□ 1.04
HMGA1-201ENST00000311487 CLEC10AQ8IUN9 316 aa21.53■■□□□ 1.04
HMGA1-201ENST00000311487 ANAPC4Q9UJX5 808 aa21.53■■□□□ 1.04
HMGA1-201ENST00000311487 NF2P35240 595 aa21.53■■□□□ 1.04
HMGA1-201ENST00000311487 TCEANC2Q96MN5 208 aa21.53■■□□□ 1.04
HMGA1-201ENST00000311487 ZKSCAN3Q9BRR0 538 aa21.53■■□□□ 1.04
HMGA1-201ENST00000311487 C22orf23Q9BZE7 217 aa21.53■■□□□ 1.04
HMGA1-201ENST00000311487 EHD4Q9H223 541 aa21.53■■□□□ 1.04
HMGA1-201ENST00000311487 LAMB1P07942 1786 aa21.52■■□□□ 1.04
HMGA1-201ENST00000311487 PCNTO95613 3336 aa21.52■■□□□ 1.04
HMGA1-201ENST00000311487 PHF20L1A8MW92 1017 aa21.52■■□□□ 1.04
HMGA1-201ENST00000311487 NMT2O60551 498 aa21.52■■□□□ 1.04
HMGA1-201ENST00000311487 SLC3A2P08195 630 aaKnown RBP21.52■■□□□ 1.04
HMGA1-201ENST00000311487 AKR1B1P15121 316 aa21.52■■□□□ 1.04
HMGA1-201ENST00000311487 PDE4BQ07343 736 aa21.52■■□□□ 1.04
HMGA1-201ENST00000311487 CERKLQ49MI3 558 aaPredicted RBP21.52■■□□□ 1.04
HMGA1-201ENST00000311487 RBM46Q8TBY0 533 aaKnown RBP21.52■■□□□ 1.04
HMGA1-201ENST00000311487 ANP32EQ9BTT0 268 aa21.52■■□□□ 1.04
HMGA1-201ENST00000311487 KDM4AO75164 1064 aa21.51■■□□□ 1.03
HMGA1-201ENST00000311487 RASA1P20936 1047 aa21.51■■□□□ 1.03
HMGA1-201ENST00000311487 RNF20Q5VTR2 975 aa21.51■■□□□ 1.03
HMGA1-201ENST00000311487 STAG1Q8WVM7 1258 aa21.51■■□□□ 1.03
HMGA1-201ENST00000311487 CLMNQ96JQ2 1002 aa21.51■■□□□ 1.03
HMGA1-201ENST00000311487 HERC5Q9UII4 1024 aaKnown RBP21.51■■□□□ 1.03
HMGA1-201ENST00000311487 COL2A1P02458 1487 aaPredicted RBP21.51■■□□□ 1.03
HMGA1-201ENST00000311487 PPP1R12BO60237 982 aaPredicted RBP21.51■■□□□ 1.03
HMGA1-201ENST00000311487 ZKSCAN1P17029 563 aaPredicted RBP21.51■■□□□ 1.03
HMGA1-201ENST00000311487 DCAF15Q66K64 600 aa21.51■■□□□ 1.03
HMGA1-201ENST00000311487 ZNF444Q8N0Y2 327 aaPredicted RBP21.51■■□□□ 1.03
HMGA1-201ENST00000311487 CHMP4CQ96CF2 233 aa21.51■■□□□ 1.03
HMGA1-201ENST00000311487 ZNF341Q9BYN7 854 aa21.51■■□□□ 1.03
HMGA1-201ENST00000311487 MCCP23508 829 aa21.5■■□□□ 1.03
HMGA1-201ENST00000311487 TFAP4Q01664 338 aa21.5■■□□□ 1.03
HMGA1-201ENST00000311487 TATDN1Q6P1N9 297 aa21.5■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms