RNA–Protein interactions for RNA: ENST00000310441.11

HCFC1-201, Transcript of host cell factor C1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HCFC1, Length 8,869 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC1-201ENST00000310441 IWS1Q96ST2 819 aa17.16■□□□□ 0.34
HCFC1-201ENST00000310441 HSP90AA4PQ58FG1 418 aa17.16■□□□□ 0.34
HCFC1-201ENST00000310441 RILPQ96NA2 401 aa17.16■□□□□ 0.34
HCFC1-201ENST00000310441 ARHGEF10LQ9HCE6 1279 aa17.16■□□□□ 0.34
HCFC1-201ENST00000310441 TBC1D8BQ0IIM8 1120 aa17.16■□□□□ 0.34
HCFC1-201ENST00000310441 KLHL14Q9P2G3 628 aa17.16■□□□□ 0.34
HCFC1-201ENST00000310441 WASLO00401 505 aaPredicted RBP17.16■□□□□ 0.34
HCFC1-201ENST00000310441 HIP1RO75146 1068 aa17.16■□□□□ 0.34
HCFC1-201ENST00000310441 DCUN1D2Q6PH85 259 aa17.16■□□□□ 0.34
HCFC1-201ENST00000310441 NACA2Q9H009 215 aa17.16■□□□□ 0.34
HCFC1-201ENST00000310441 KARSQ15046 597 aaKnown RBP17.16■□□□□ 0.34
HCFC1-201ENST00000310441 ARHGAP6O43182 974 aa17.16■□□□□ 0.34
HCFC1-201ENST00000310441 FAM8A1Q9UBU6 413 aa17.15■□□□□ 0.34
HCFC1-201ENST00000310441 TRIM37O94972 964 aa17.15■□□□□ 0.34
HCFC1-201ENST00000310441 BIRC2Q13490 618 aa17.15■□□□□ 0.34
HCFC1-201ENST00000310441 TPCN1Q9ULQ1 816 aa17.15■□□□□ 0.34
HCFC1-201ENST00000310441 DEXIO95424 95 aa17.15■□□□□ 0.34
HCFC1-201ENST00000310441 MAP2K2P36507 400 aa17.15■□□□□ 0.34
HCFC1-201ENST00000310441 KRT15P19012 456 aa17.15■□□□□ 0.34
HCFC1-201ENST00000310441 ATP6V1E1P36543 226 aa17.15■□□□□ 0.34
HCFC1-201ENST00000310441 CASC4Q6P4E1 433 aa17.15■□□□□ 0.34
HCFC1-201ENST00000310441 GTF3C6Q969F1 213 aa17.15■□□□□ 0.34
HCFC1-201ENST00000310441 ZNF622Q969S3 477 aaKnown RBP eCLIP17.15■□□□□ 0.341e-7■■□□□ 12.1
HCFC1-201ENST00000310441 EIF3CLB5ME19 914 aaKnown RBP17.15■□□□□ 0.34
HCFC1-201ENST00000310441 EIF3CQ99613 913 aaKnown RBP17.15■□□□□ 0.34
HCFC1-201ENST00000310441 CD2APQ9Y5K6 639 aa17.15■□□□□ 0.34
HCFC1-201ENST00000310441 SIRT1Q96EB6 747 aa17.15■□□□□ 0.34
HCFC1-201ENST00000310441 ZBTB3Q9H5J0 574 aa17.15■□□□□ 0.34
HCFC1-201ENST00000310441 ARHGEF11O15085 1522 aa17.15■□□□□ 0.34
HCFC1-201ENST00000310441 PSMD6Q15008 389 aa17.15■□□□□ 0.34
HCFC1-201ENST00000310441 MLKLQ8NB16 471 aa17.15■□□□□ 0.34
HCFC1-201ENST00000310441 EYA3Q99504 573 aa17.15■□□□□ 0.34
HCFC1-201ENST00000310441 TBC1D8O95759 1140 aa17.14■□□□□ 0.34
HCFC1-201ENST00000310441 PRIM1P49642 420 aaKnown RBP17.14■□□□□ 0.33
HCFC1-201ENST00000310441 SPC25Q9HBM1 224 aa17.14■□□□□ 0.33
HCFC1-201ENST00000310441 ANKFY1Q9P2R3 1169 aa17.14■□□□□ 0.33
HCFC1-201ENST00000310441 RNF113AO15541 343 aaKnown RBP17.14■□□□□ 0.33
HCFC1-201ENST00000310441 DMRT2Q9Y5R5 561 aa17.14■□□□□ 0.33
HCFC1-201ENST00000310441 SMC5Q8IY18 1101 aa17.14■□□□□ 0.33
HCFC1-201ENST00000310441 THUMPD2Q9BTF0 503 aaKnown RBP17.14■□□□□ 0.33
HCFC1-201ENST00000310441 PAK1Q13153 545 aa17.14■□□□□ 0.33
HCFC1-201ENST00000310441 TRIML1Q8N9V2 468 aa17.14■□□□□ 0.33
HCFC1-201ENST00000310441 HELLSQ9NRZ9 838 aa17.14■□□□□ 0.33
HCFC1-201ENST00000310441 MBIPQ9NS73 344 aa17.14■□□□□ 0.33
HCFC1-201ENST00000310441 CCNT1O60563 726 aaKnown RBP17.14■□□□□ 0.33
HCFC1-201ENST00000310441 KRT12Q99456 494 aa17.14■□□□□ 0.33
HCFC1-201ENST00000310441 IBTKQ9P2D0 1353 aaPredicted RBP17.14■□□□□ 0.33
HCFC1-201ENST00000310441 CDK13Q14004 1512 aaKnown RBP17.14■□□□□ 0.33
HCFC1-201ENST00000310441 MCM9Q9NXL9 1143 aa17.13■□□□□ 0.33
HCFC1-201ENST00000310441 KRT9P35527 623 aa17.13■□□□□ 0.33
HCFC1-201ENST00000310441 RIOK1Q9BRS2 568 aaKnown RBP17.13■□□□□ 0.33
HCFC1-201ENST00000310441 LDHBP07195 334 aaKnown RBP17.13■□□□□ 0.33
HCFC1-201ENST00000310441 PDZD4Q76G19 769 aaPredicted RBP17.13■□□□□ 0.33
HCFC1-201ENST00000310441 TMEM87BQ96K49 555 aa17.13■□□□□ 0.33
HCFC1-201ENST00000310441 XRCC6P12956 609 aaKnown RBP eCLIP17.13■□□□□ 0.338e-7■■■■□ 23.9
HCFC1-201ENST00000310441 CCDC51Q96ER9 411 aa17.13■□□□□ 0.33
HCFC1-201ENST00000310441 RPRD2Q5VT52 1461 aaKnown RBP17.13■□□□□ 0.33
HCFC1-201ENST00000310441 TXNDC9O14530 226 aa17.13■□□□□ 0.33
HCFC1-201ENST00000310441 RGS16O15492 202 aaPredicted RBP17.13■□□□□ 0.33
HCFC1-201ENST00000310441 RBBP5Q15291 538 aaKnown RBP17.13■□□□□ 0.33
HCFC1-201ENST00000310441 MED4Q9NPJ6 270 aa17.13■□□□□ 0.33
HCFC1-201ENST00000310441 MYH10P35580 1976 aa17.13■□□□□ 0.33
HCFC1-201ENST00000310441 VWA3AA6NCI4 1184 aa17.13■□□□□ 0.33
HCFC1-201ENST00000310441 PEX26Q7Z412 305 aa17.13■□□□□ 0.33
HCFC1-201ENST00000310441 MAST3O60307 1309 aa17.13■□□□□ 0.33
HCFC1-201ENST00000310441 ANKRD44Q8N8A2 993 aa17.12■□□□□ 0.33
HCFC1-201ENST00000310441 NECAB1Q8N987 351 aa17.12■□□□□ 0.33
HCFC1-201ENST00000310441 TRIM58Q8NG06 486 aa17.12■□□□□ 0.33
HCFC1-201ENST00000310441 KDM3AQ9Y4C1 1321 aa17.12■□□□□ 0.33
HCFC1-201ENST00000310441 CCDC105Q8IYK2 499 aa17.12■□□□□ 0.33
HCFC1-201ENST00000310441 GOLGA5Q8TBA6 731 aa17.12■□□□□ 0.33
HCFC1-201ENST00000310441 BRD3Q15059 726 aa17.12■□□□□ 0.33
HCFC1-201ENST00000310441 SNRKQ9NRH2 765 aa17.12■□□□□ 0.33
HCFC1-201ENST00000310441 PICK1Q9NRD5 415 aa17.12■□□□□ 0.33
HCFC1-201ENST00000310441 DUOX2Q9NRD8 1548 aa17.12■□□□□ 0.33
HCFC1-201ENST00000310441 RSAD2Q8WXG1 361 aa17.12■□□□□ 0.33
HCFC1-201ENST00000310441 LARP6Q9BRS8 491 aaKnown RBP17.12■□□□□ 0.33
HCFC1-201ENST00000310441 PSDA5PKW4 1024 aaPredicted RBP17.12■□□□□ 0.33
HCFC1-201ENST00000310441 NRBF2Q96F24 287 aa17.12■□□□□ 0.33
HCFC1-201ENST00000310441 RIC8AQ9NPQ8 531 aa17.12■□□□□ 0.33
HCFC1-201ENST00000310441 PHF8Q9UPP1 1060 aa17.12■□□□□ 0.33
HCFC1-201ENST00000310441 AOX1Q06278 1338 aa17.12■□□□□ 0.33
HCFC1-201ENST00000310441 RPS6KA1Q15418 735 aa17.11■□□□□ 0.33
HCFC1-201ENST00000310441 HOXA7P31268 230 aaPredicted RBP17.11■□□□□ 0.33
HCFC1-201ENST00000310441 RNASELQ05823 741 aaKnown RBP17.11■□□□□ 0.33
HCFC1-201ENST00000310441 TTC6Q86TZ1 520 aa17.11■□□□□ 0.33
HCFC1-201ENST00000310441 NGLY1Q96IV0 654 aa17.11■□□□□ 0.33
HCFC1-201ENST00000310441 CCDC93Q567U6 631 aa17.11■□□□□ 0.33
HCFC1-201ENST00000310441 C16orf71Q8IYS4 520 aaPredicted RBP17.11■□□□□ 0.33
HCFC1-201ENST00000310441 MAGEB6Q8N7X4 407 aa17.11■□□□□ 0.33
HCFC1-201ENST00000310441 TOPBP1Q92547 1522 aa17.11■□□□□ 0.33
HCFC1-201ENST00000310441 CUTAO60888 179 aa17.11■□□□□ 0.33
HCFC1-201ENST00000310441 CREB3L3Q68CJ9 461 aa17.11■□□□□ 0.33
HCFC1-201ENST00000310441 NOP56O00567 594 aaKnown RBP17.11■□□□□ 0.33
HCFC1-201ENST00000310441 CSGALNACT2Q8N6G5 542 aa17.11■□□□□ 0.33
HCFC1-201ENST00000310441 OPHN1O60890 802 aa17.11■□□□□ 0.33
HCFC1-201ENST00000310441 MAN1A1P33908 653 aa17.11■□□□□ 0.33
HCFC1-201ENST00000310441 MCTP2Q6DN12 878 aa17.11■□□□□ 0.33
HCFC1-201ENST00000310441 PNMA8AQ86V59 439 aaPredicted RBP17.11■□□□□ 0.33
HCFC1-201ENST00000310441 CSRNP1Q96S65 589 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms