RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 TRIM31Q9BZY9 425 aa19.35■□□□□ 0.69
SYNPO-201ENST00000307662 BAIAP2L1Q9UHR4 511 aa19.35■□□□□ 0.69
SYNPO-201ENST00000307662 GOLGA8KD6RF30 607 aa19.34■□□□□ 0.69
SYNPO-201ENST00000307662 ERCC5P28715 1186 aaPredicted RBP19.34■□□□□ 0.69
SYNPO-201ENST00000307662 CCDC38Q502W7 563 aa19.34■□□□□ 0.69
SYNPO-201ENST00000307662 GKAP1Q5VSY0 366 aaPredicted RBP19.34■□□□□ 0.69
SYNPO-201ENST00000307662 DDX55Q8NHQ9 600 aaKnown RBP eCLIP19.34■□□□□ 0.69
SYNPO-201ENST00000307662 ETF1P62495 437 aaKnown RBP19.34■□□□□ 0.69
SYNPO-201ENST00000307662 TNNI3KQ59H18 835 aa19.34■□□□□ 0.69
SYNPO-201ENST00000307662 ARHGEF2Q92974 986 aaKnown RBP19.34■□□□□ 0.69
SYNPO-201ENST00000307662 MCM9Q9NXL9 1143 aa19.34■□□□□ 0.69
SYNPO-201ENST00000307662 FRMD4BQ9Y2L6 1034 aa19.34■□□□□ 0.69
SYNPO-201ENST00000307662 FPGT-TNNI3KV9GXZ4 949 aa19.34■□□□□ 0.69
SYNPO-201ENST00000307662 MAP3K19Q56UN5 1328 aa19.34■□□□□ 0.69
SYNPO-201ENST00000307662 ZNF131P52739 623 aa19.34■□□□□ 0.69
SYNPO-201ENST00000307662 ADKP55263 362 aaKnown RBP19.34■□□□□ 0.69
SYNPO-201ENST00000307662 LETM2Q2VYF4 491 aa19.34■□□□□ 0.69
SYNPO-201ENST00000307662 SSX2IPQ9Y2D8 614 aa19.34■□□□□ 0.69
SYNPO-201ENST00000307662 JAK2O60674 1132 aa19.34■□□□□ 0.69
SYNPO-201ENST00000307662 MYCBPQ99417 103 aaPredicted RBP19.34■□□□□ 0.69
SYNPO-201ENST00000307662 MAST1Q9Y2H9 1570 aa19.34■□□□□ 0.69
SYNPO-201ENST00000307662 HOXC9P31274 260 aa19.33■□□□□ 0.69
SYNPO-201ENST00000307662 CLUL1Q15846 466 aa19.33■□□□□ 0.69
SYNPO-201ENST00000307662 UAP1Q16222 522 aaPredicted RBP19.33■□□□□ 0.69
SYNPO-201ENST00000307662 BABAM1Q9NWV8 329 aa19.33■□□□□ 0.69
SYNPO-201ENST00000307662 IL13P35225 146 aa19.33■□□□□ 0.69
SYNPO-201ENST00000307662 PIK3AP1Q6ZUJ8 805 aa19.33■□□□□ 0.69
SYNPO-201ENST00000307662 MSANTD4Q8NCY6 345 aa19.33■□□□□ 0.69
SYNPO-201ENST00000307662 KIAA1468Q9P260 1216 aa19.33■□□□□ 0.69
SYNPO-201ENST00000307662 ARHGAP24Q8N264 748 aa19.33■□□□□ 0.69
SYNPO-201ENST00000307662 PSMB7Q99436 277 aa19.33■□□□□ 0.69
SYNPO-201ENST00000307662 PPP2R2CQ9Y2T4 447 aa19.33■□□□□ 0.69
SYNPO-201ENST00000307662 FAM169AQ9Y6X4 670 aa19.33■□□□□ 0.69
SYNPO-201ENST00000307662 DISP1Q96F81 1524 aa19.33■□□□□ 0.68
SYNPO-201ENST00000307662 MBD4O95243 580 aa19.33■□□□□ 0.68
SYNPO-201ENST00000307662 BEND3Q5T5X7 828 aa19.33■□□□□ 0.68
SYNPO-201ENST00000307662 ADALQ6DHV7 355 aa19.33■□□□□ 0.68
SYNPO-201ENST00000307662 SSH2Q76I76 1423 aa19.33■□□□□ 0.68
SYNPO-201ENST00000307662 ARL1P40616 181 aaPredicted RBP19.33■□□□□ 0.68
SYNPO-201ENST00000307662 TTC38Q5R3I4 469 aa19.33■□□□□ 0.68
SYNPO-201ENST00000307662 NFATC2IPQ8NCF5 419 aa19.33■□□□□ 0.68
SYNPO-201ENST00000307662 TRAF3IP1Q8TDR0 691 aaPredicted RBP19.33■□□□□ 0.68
SYNPO-201ENST00000307662 GDAP1L1Q96MZ0 367 aa19.33■□□□□ 0.68
SYNPO-201ENST00000307662 KIF3CO14782 793 aa19.32■□□□□ 0.68
SYNPO-201ENST00000307662 ZNF365Q70YC5 407 aa19.32■□□□□ 0.68
SYNPO-201ENST00000307662 NELFBQ8WX92 580 aa19.32■□□□□ 0.68
SYNPO-201ENST00000307662 NGLY1Q96IV0 654 aa19.32■□□□□ 0.68
SYNPO-201ENST00000307662 MED4Q9NPJ6 270 aa19.32■□□□□ 0.68
SYNPO-201ENST00000307662 NDC80O14777 642 aa19.32■□□□□ 0.68
SYNPO-201ENST00000307662 TRMT44Q8IYL2 757 aaKnown RBP19.32■□□□□ 0.68
SYNPO-201ENST00000307662 ME3Q16798 604 aa19.32■□□□□ 0.68
SYNPO-201ENST00000307662 WDR78Q5VTH9 848 aa19.32■□□□□ 0.68
SYNPO-201ENST00000307662 KRT40Q6A162 431 aa19.32■□□□□ 0.68
SYNPO-201ENST00000307662 CCDC62Q6P9F0 684 aa19.32■□□□□ 0.68
SYNPO-201ENST00000307662 FAM71BQ8TC56 605 aa19.32■□□□□ 0.68
SYNPO-201ENST00000307662 NR1I2O75469 434 aa19.32■□□□□ 0.68
SYNPO-201ENST00000307662 ATP6V1AP38606 617 aa19.32■□□□□ 0.68
SYNPO-201ENST00000307662 RPS6KA1Q15418 735 aa19.32■□□□□ 0.68
SYNPO-201ENST00000307662 KRT71Q3SY84 523 aa19.32■□□□□ 0.68
SYNPO-201ENST00000307662 IP6K1Q92551 441 aa19.32■□□□□ 0.68
SYNPO-201ENST00000307662 KIFAP3Q92845 792 aa19.32■□□□□ 0.68
SYNPO-201ENST00000307662 PPANQ9NQ55 473 aaKnown RBP19.32■□□□□ 0.68
SYNPO-201ENST00000307662 PNOCQ13519 176 aa19.31■□□□□ 0.68
SYNPO-201ENST00000307662 RNF10Q8N5U6 811 aaKnown RBP19.31■□□□□ 0.68
SYNPO-201ENST00000307662 PYCARDQ9ULZ3 195 aa19.31■□□□□ 0.68
SYNPO-201ENST00000307662 DMRT2Q9Y5R5 561 aa19.31■□□□□ 0.68
SYNPO-201ENST00000307662 CCDC14Q49A88 953 aa19.31■□□□□ 0.68
SYNPO-201ENST00000307662 IQCDQ96DY2 449 aa19.31■□□□□ 0.68
SYNPO-201ENST00000307662 DDX41Q9UJV9 622 aaKnown RBP19.31■□□□□ 0.68
SYNPO-201ENST00000307662 HGSO14964 777 aaPredicted RBP19.31■□□□□ 0.68
SYNPO-201ENST00000307662 FCHSD1Q86WN1 690 aa19.31■□□□□ 0.68
SYNPO-201ENST00000307662 SYCE1Q8N0S2 351 aa19.31■□□□□ 0.68
SYNPO-201ENST00000307662 CAPS2Q9BXY5 557 aa19.31■□□□□ 0.68
SYNPO-201ENST00000307662 TRIM35Q9UPQ4 493 aa19.31■□□□□ 0.68
SYNPO-201ENST00000307662 RNMTO43148 476 aaKnown RBP19.31■□□□□ 0.68
SYNPO-201ENST00000307662 KIF24Q5T7B8 1368 aa19.31■□□□□ 0.68
SYNPO-201ENST00000307662 EDC4Q6P2E9 1401 aaKnown RBP19.3■□□□□ 0.68
SYNPO-201ENST00000307662 KIF21AQ7Z4S6 1674 aa19.3■□□□□ 0.68
SYNPO-201ENST00000307662 DCAF5Q96JK2 942 aa19.3■□□□□ 0.68
SYNPO-201ENST00000307662 IFIH1Q9BYX4 1025 aaKnown RBP19.3■□□□□ 0.68
SYNPO-201ENST00000307662 CETN3O15182 167 aa19.3■□□□□ 0.68
SYNPO-201ENST00000307662 GCP02774 474 aa19.3■□□□□ 0.68
SYNPO-201ENST00000307662 ABCC2Q92887 1545 aa19.3■□□□□ 0.68
SYNPO-201ENST00000307662 PSDA5PKW4 1024 aaPredicted RBP19.3■□□□□ 0.68
SYNPO-201ENST00000307662 GSPT1P15170 499 aaKnown RBP19.3■□□□□ 0.68
SYNPO-201ENST00000307662 PLS1Q14651 629 aa19.3■□□□□ 0.68
SYNPO-201ENST00000307662 HHATQ5VTY9 493 aa19.3■□□□□ 0.68
SYNPO-201ENST00000307662 NBPF6Q5VWK0 638 aa19.3■□□□□ 0.68
SYNPO-201ENST00000307662 NBPF5PQ86XG9 351 aaPredicted RBP19.3■□□□□ 0.68
SYNPO-201ENST00000307662 NBPF4Q96M43 638 aa19.3■□□□□ 0.68
SYNPO-201ENST00000307662 PARP1P09874 1014 aaKnown RBP19.29■□□□□ 0.68
SYNPO-201ENST00000307662 RPUSD2Q8IZ73 545 aaKnown RBP19.29■□□□□ 0.68
SYNPO-201ENST00000307662 CALUO43852 315 aaPredicted RBP19.29■□□□□ 0.68
SYNPO-201ENST00000307662 PICALMQ13492 652 aa19.29■□□□□ 0.68
SYNPO-201ENST00000307662 PKP1Q13835 747 aa19.29■□□□□ 0.68
SYNPO-201ENST00000307662 APPBP2Q92624 585 aa19.29■□□□□ 0.68
SYNPO-201ENST00000307662 TCHPQ9BT92 498 aa19.29■□□□□ 0.68
SYNPO-201ENST00000307662 DDX21Q9NR30 783 aaKnown RBP eCLIP19.29■□□□□ 0.68
SYNPO-201ENST00000307662 PNMA6EA0A0J9YXQ4 647 aa19.29■□□□□ 0.68
SYNPO-201ENST00000307662 ATP8B1O43520 1251 aa19.29■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms