RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 MKRN1Q9UHC7 482 aaKnown RBP16.66■□□□□ 0.26
C9orf3-202ENST00000297979 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.66■□□□□ 0.26
C9orf3-202ENST00000297979 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.66■□□□□ 0.26
C9orf3-202ENST00000297979 NID2Q14112 1375 aa16.66■□□□□ 0.26
C9orf3-202ENST00000297979 GPR75-ASB3A0A0A6YYF3 556 aa16.66■□□□□ 0.26
C9orf3-202ENST00000297979 RXRAP19793 462 aa16.66■□□□□ 0.26
C9orf3-202ENST00000297979 KRT85P78386 507 aa16.66■□□□□ 0.26
C9orf3-202ENST00000297979 RESTQ13127 1097 aa16.66■□□□□ 0.26
C9orf3-202ENST00000297979 CPLX2Q6PUV4 134 aaKnown RBP16.66■□□□□ 0.26
C9orf3-202ENST00000297979 FAM163AQ96GL9 167 aaPredicted RBP16.66■□□□□ 0.26
C9orf3-202ENST00000297979 ORC3Q9UBD5 711 aaPredicted RBP16.66■□□□□ 0.26
C9orf3-202ENST00000297979 ORC4O43929 436 aa16.65■□□□□ 0.26
C9orf3-202ENST00000297979 FOSBP53539 338 aa16.65■□□□□ 0.26
C9orf3-202ENST00000297979 PDGFDQ9GZP0 370 aaPredicted RBP16.65■□□□□ 0.26
C9orf3-202ENST00000297979 SUGT1Q9Y2Z0 365 aa16.65■□□□□ 0.26
C9orf3-202ENST00000297979 GAKO14976 1311 aa16.65■□□□□ 0.26
C9orf3-202ENST00000297979 TNKSO95271 1327 aa16.65■□□□□ 0.26
C9orf3-202ENST00000297979 RANBP6O60518 1105 aaKnown RBP16.65■□□□□ 0.26
C9orf3-202ENST00000297979 CYP2D6P10635 497 aa16.65■□□□□ 0.26
C9orf3-202ENST00000297979 PLCG2P16885 1265 aa16.65■□□□□ 0.26
C9orf3-202ENST00000297979 FBXW7Q969H0 707 aa16.65■□□□□ 0.26
C9orf3-202ENST00000297979 MYL10Q9BUA6 226 aa16.65■□□□□ 0.26
C9orf3-202ENST00000297979 CDK5RAP2Q96SN8 1893 aa16.65■□□□□ 0.26
C9orf3-202ENST00000297979 C10orf71Q711Q0 1435 aa16.65■□□□□ 0.26
C9orf3-202ENST00000297979 G3V3G9 751 aa16.65■□□□□ 0.26
C9orf3-202ENST00000297979 PRDM1O75626 825 aa16.65■□□□□ 0.26
C9orf3-202ENST00000297979 USP17L8P0C7I0 530 aa16.65■□□□□ 0.26
C9orf3-202ENST00000297979 CDC27P30260 824 aa16.65■□□□□ 0.26
C9orf3-202ENST00000297979 ADD1P35611 737 aaKnown RBP16.65■□□□□ 0.26
C9orf3-202ENST00000297979 DOK7Q18PE1 504 aa16.65■□□□□ 0.26
C9orf3-202ENST00000297979 DCAF8Q5TAQ9 597 aa16.65■□□□□ 0.26
C9orf3-202ENST00000297979 GADD45BO75293 160 aaPredicted RBP16.64■□□□□ 0.25
C9orf3-202ENST00000297979 RCAN1P53805 252 aa16.64■□□□□ 0.25
C9orf3-202ENST00000297979 EVX2Q03828 476 aa16.64■□□□□ 0.25
C9orf3-202ENST00000297979 PDE4BQ07343 736 aa16.64■□□□□ 0.25
C9orf3-202ENST00000297979 SEC23AQ15436 765 aa16.64■□□□□ 0.25
C9orf3-202ENST00000297979 FAM173BQ6P4H8 233 aa16.64■□□□□ 0.25
C9orf3-202ENST00000297979 IQCA1Q86XH1 822 aa16.64■□□□□ 0.25
C9orf3-202ENST00000297979 AMOTL1Q8IY63 956 aa16.64■□□□□ 0.25
C9orf3-202ENST00000297979 CCDC144CPQ8IYA2 1237 aa16.64■□□□□ 0.25
C9orf3-202ENST00000297979 ZSCAN10Q96SZ4 725 aaPredicted RBP16.64■□□□□ 0.25
C9orf3-202ENST00000297979 DLEC1Q9Y238 1755 aa16.64■□□□□ 0.25
C9orf3-202ENST00000297979 C12orf60Q5U649 245 aa16.64■□□□□ 0.25
C9orf3-202ENST00000297979 TGFBRAP1Q8WUH2 860 aa16.64■□□□□ 0.25
C9orf3-202ENST00000297979 MYH15Q9Y2K3 1946 aa16.63■□□□□ 0.25
C9orf3-202ENST00000297979 GOLGA6L3A6NEY3 463 aa16.63■□□□□ 0.25
C9orf3-202ENST00000297979 UBE2HP62256 183 aa16.63■□□□□ 0.25
C9orf3-202ENST00000297979 ZNF592Q92610 1267 aa16.63■□□□□ 0.25
C9orf3-202ENST00000297979 ROBO3Q96MS0 1386 aa16.63■□□□□ 0.25
C9orf3-202ENST00000297979 FSD2A1L4K1 749 aa16.63■□□□□ 0.25
C9orf3-202ENST00000297979 C8orf76Q96K31 380 aa16.63■□□□□ 0.25
C9orf3-202ENST00000297979 FAM217BQ9NTX9 383 aaPredicted RBP16.63■□□□□ 0.25
C9orf3-202ENST00000297979 DDX60LQ5H9U9 1706 aaKnown RBP16.62■□□□□ 0.25
C9orf3-202ENST00000297979 TEX11Q8IYF3 940 aa16.62■□□□□ 0.25
C9orf3-202ENST00000297979 ZNF654Q8IZM8 581 aa16.62■□□□□ 0.25
C9orf3-202ENST00000297979 ENAHQ8N8S7 591 aaPredicted RBP16.62■□□□□ 0.25
C9orf3-202ENST00000297979 SLC16A10Q8TF71 515 aa16.62■□□□□ 0.25
C9orf3-202ENST00000297979 RNF216Q9NWF9 866 aaPredicted RBP16.62■□□□□ 0.25
C9orf3-202ENST00000297979 ISY1Q9ULR0 285 aaKnown RBP16.62■□□□□ 0.25
C9orf3-202ENST00000297979 NT5C2P49902 561 aa16.62■□□□□ 0.25
C9orf3-202ENST00000297979 GUCY1B3Q02153 619 aa16.62■□□□□ 0.25
C9orf3-202ENST00000297979 NTRK3Q16288 839 aa16.62■□□□□ 0.25
C9orf3-202ENST00000297979 RTN1Q16799 776 aa16.62■□□□□ 0.25
C9orf3-202ENST00000297979 ZSCAN23Q3MJ62 389 aa16.62■□□□□ 0.25
C9orf3-202ENST00000297979 PODNQ7Z5L7 613 aa16.62■□□□□ 0.25
C9orf3-202ENST00000297979 CERS5Q8N5B7 392 aa16.62■□□□□ 0.25
C9orf3-202ENST00000297979 SCAND2PQ9GZW5 306 aaPredicted RBP16.62■□□□□ 0.25
C9orf3-202ENST00000297979 RBM27Q9P2N5 1060 aaKnown RBP16.62■□□□□ 0.25
C9orf3-202ENST00000297979 ZNF219Q9P2Y4 722 aaPredicted RBP16.62■□□□□ 0.25
C9orf3-202ENST00000297979 DAGLAQ9Y4D2 1042 aa16.62■□□□□ 0.25
C9orf3-202ENST00000297979 ECM29Q5VYK3 1845 aa16.61■□□□□ 0.25
C9orf3-202ENST00000297979 MAPKAPK5Q8IW41 473 aa16.61■□□□□ 0.25
C9orf3-202ENST00000297979 RGS22Q8NE09 1264 aa16.61■□□□□ 0.25
C9orf3-202ENST00000297979 C7orf43Q8WVR3 580 aa16.61■□□□□ 0.25
C9orf3-202ENST00000297979 TMEM63CQ9P1W3 806 aa16.61■□□□□ 0.25
C9orf3-202ENST00000297979 ELP1O95163 1332 aa16.61■□□□□ 0.25
C9orf3-202ENST00000297979 RHBDL3P58872 404 aa16.61■□□□□ 0.25
C9orf3-202ENST00000297979 SLC4A8Q2Y0W8 1093 aa16.61■□□□□ 0.25
C9orf3-202ENST00000297979 IFIT1BQ5T764 474 aaKnown RBP16.61■□□□□ 0.25
C9orf3-202ENST00000297979 L1TD1Q5T7N2 865 aaKnown RBP16.61■□□□□ 0.25
C9orf3-202ENST00000297979 CC2D2BQ6DHV5 1058 aa16.61■□□□□ 0.25
C9orf3-202ENST00000297979 DBNDD1Q9H9R9 158 aa16.61■□□□□ 0.25
C9orf3-202ENST00000297979 STK36Q9NRP7 1315 aa16.61■□□□□ 0.25
C9orf3-202ENST00000297979 IARSP41252 1262 aaKnown RBP16.6■□□□□ 0.25
C9orf3-202ENST00000297979 TTC6Q86TZ1 520 aa16.6■□□□□ 0.25
C9orf3-202ENST00000297979 FBXO18Q8NFZ0 1043 aa16.6■□□□□ 0.25
C9orf3-202ENST00000297979 FOCADQ5VW36 1801 aa16.6■□□□□ 0.25
C9orf3-202ENST00000297979 SNED1Q8TER0 1413 aa16.6■□□□□ 0.25
C9orf3-202ENST00000297979 CCDC196A0A1B0GTZ2 297 aa16.6■□□□□ 0.25
C9orf3-202ENST00000297979 PHKBQ93100 1093 aa16.6■□□□□ 0.25
C9orf3-202ENST00000297979 SYAP1Q96A49 352 aaPredicted RBP16.6■□□□□ 0.25
C9orf3-202ENST00000297979 TTF2Q9UNY4 1162 aaKnown RBP16.6■□□□□ 0.25
C9orf3-202ENST00000297979 F8W031 263 aaPredicted RBP16.6■□□□□ 0.25
C9orf3-202ENST00000297979 POLR3DP05423 398 aaPredicted RBP16.6■□□□□ 0.25
C9orf3-202ENST00000297979 IFNAR1P17181 557 aa16.6■□□□□ 0.25
C9orf3-202ENST00000297979 ZNF445P59923 1031 aa16.6■□□□□ 0.25
C9orf3-202ENST00000297979 NUP133Q8WUM0 1156 aa16.6■□□□□ 0.25
C9orf3-202ENST00000297979 TFIP11Q9UBB9 837 aaKnown RBP16.6■□□□□ 0.25
C9orf3-202ENST00000297979 FLT1P17948 1338 aa16.59■□□□□ 0.25
C9orf3-202ENST00000297979 TSPY2A6NKD2 308 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 155.3 ms