RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 CCDC138Q96M89 665 aa5.36□□□□□ -1.55
CSMD3-201ENST00000297405 MPP6Q9NZW5 540 aa5.36□□□□□ -1.55
CSMD3-201ENST00000297405 RSPH10B2B2RC85 870 aa5.36□□□□□ -1.55
CSMD3-201ENST00000297405 H7C0S8 307 aa5.36□□□□□ -1.55
CSMD3-201ENST00000297405 STXBP3O00186 592 aa5.36□□□□□ -1.55
CSMD3-201ENST00000297405 RSPH10BP0C881 870 aa5.36□□□□□ -1.55
CSMD3-201ENST00000297405 OAS2P29728 719 aaKnown RBP5.36□□□□□ -1.55
CSMD3-201ENST00000297405 PPP1R42Q7Z4L9 355 aa5.36□□□□□ -1.55
CSMD3-201ENST00000297405 CCDC89Q8N998 374 aa5.36□□□□□ -1.55
CSMD3-201ENST00000297405 PDZRN3Q9UPQ7 1066 aa5.36□□□□□ -1.55
CSMD3-201ENST00000297405 MAD1L1Q9Y6D9 718 aa5.36□□□□□ -1.55
CSMD3-201ENST00000297405 SOS1Q07889 1333 aaPredicted RBP5.36□□□□□ -1.55
CSMD3-201ENST00000297405 CHGBP05060 677 aa5.36□□□□□ -1.55
CSMD3-201ENST00000297405 HCLS1P14317 486 aaPredicted RBP5.36□□□□□ -1.55
CSMD3-201ENST00000297405 CDC25BP30305 580 aa5.36□□□□□ -1.55
CSMD3-201ENST00000297405 ATP6V1E1P36543 226 aa5.36□□□□□ -1.55
CSMD3-201ENST00000297405 DKK3Q9UBP4 350 aa5.36□□□□□ -1.55
CSMD3-201ENST00000297405 BAG5Q9UL15 447 aa5.36□□□□□ -1.55
CSMD3-201ENST00000297405 LRRIQ1Q96JM4 1722 aa5.36□□□□□ -1.55
CSMD3-201ENST00000297405 PSDA5PKW4 1024 aaPredicted RBP5.36□□□□□ -1.55
CSMD3-201ENST00000297405 LRRIQ3A6PVS8 624 aaPredicted RBP5.36□□□□□ -1.55
CSMD3-201ENST00000297405 LONP1P36776 959 aaKnown RBP5.36□□□□□ -1.55
CSMD3-201ENST00000297405 KPNB1Q14974 876 aaKnown RBP5.36□□□□□ -1.55
CSMD3-201ENST00000297405 EXOC1Q9NV70 894 aa5.36□□□□□ -1.55
CSMD3-201ENST00000297405 UHRF1BP1Q6BDS2 1440 aa5.36□□□□□ -1.55
CSMD3-201ENST00000297405 IL16Q14005 1332 aa5.36□□□□□ -1.55
CSMD3-201ENST00000297405 CYTH1Q15438 398 aa5.36□□□□□ -1.55
CSMD3-201ENST00000297405 C10orf76Q5T2E6 689 aa5.36□□□□□ -1.55
CSMD3-201ENST00000297405 EP400NLQ6ZTU2 488 aa5.36□□□□□ -1.55
CSMD3-201ENST00000297405 SRRM1Q8IYB3 904 aaKnown RBP5.36□□□□□ -1.55
CSMD3-201ENST00000297405 FSIP1Q8NA03 581 aa5.36□□□□□ -1.55
CSMD3-201ENST00000297405 MAP3K5Q99683 1374 aa5.36□□□□□ -1.55
CSMD3-201ENST00000297405 MKL2Q9ULH7 1088 aa5.36□□□□□ -1.55
CSMD3-201ENST00000297405 NOC2LQ9Y3T9 749 aaKnown RBP5.36□□□□□ -1.55
CSMD3-201ENST00000297405 DIAPH2O60879 1101 aa5.36□□□□□ -1.55
CSMD3-201ENST00000297405 RPL13P26373 211 aaKnown RBP5.36□□□□□ -1.55
CSMD3-201ENST00000297405 SEL1L2Q5TEA6 688 aa5.36□□□□□ -1.55
CSMD3-201ENST00000297405 HEATR5AQ86XA9 2040 aa5.36□□□□□ -1.55
CSMD3-201ENST00000297405 PALM2-AKAP2B1ALY0 433 aaPredicted RBP5.36□□□□□ -1.55
CSMD3-201ENST00000297405 UBA7P41226 1012 aa5.36□□□□□ -1.55
CSMD3-201ENST00000297405 HORMAD1Q86X24 394 aa5.36□□□□□ -1.55
CSMD3-201ENST00000297405 ZNF483Q8TF39 744 aaPredicted RBP5.36□□□□□ -1.55
CSMD3-201ENST00000297405 CC2D2AQ9P2K1 1620 aa5.36□□□□□ -1.55
CSMD3-201ENST00000297405 CYLC2Q14093 348 aaPredicted RBP5.36□□□□□ -1.55
CSMD3-201ENST00000297405 EMBQ6PCB8 327 aa5.36□□□□□ -1.55
CSMD3-201ENST00000297405 MCM10Q7L590 875 aa5.36□□□□□ -1.55
CSMD3-201ENST00000297405 TRIM15Q9C019 465 aa5.36□□□□□ -1.55
CSMD3-201ENST00000297405 KRT23Q9C075 422 aa5.36□□□□□ -1.55
CSMD3-201ENST00000297405 WWC3Q9ULE0 1092 aa5.36□□□□□ -1.55
CSMD3-201ENST00000297405 CEP290O15078 2479 aa5.36□□□□□ -1.55
CSMD3-201ENST00000297405 FAM160A1Q05DH4 1040 aa5.36□□□□□ -1.55
CSMD3-201ENST00000297405 STX3Q13277 289 aa5.36□□□□□ -1.55
CSMD3-201ENST00000297405 UNC13CQ8NB66 2214 aa5.35□□□□□ -1.55
CSMD3-201ENST00000297405 FCHSD2O94868 740 aa5.35□□□□□ -1.55
CSMD3-201ENST00000297405 HSPA9P38646 679 aaKnown RBP5.35□□□□□ -1.55
CSMD3-201ENST00000297405 DEFA1P59665 94 aa5.35□□□□□ -1.55
CSMD3-201ENST00000297405 DEFA3P59666 94 aa5.35□□□□□ -1.55
CSMD3-201ENST00000297405 ANO6Q4KMQ2 910 aa5.35□□□□□ -1.55
CSMD3-201ENST00000297405 BCAS4Q8TDM0 211 aa5.35□□□□□ -1.55
CSMD3-201ENST00000297405 GLT8D2Q9H1C3 349 aa5.35□□□□□ -1.55
CSMD3-201ENST00000297405 CNGA2Q16280 664 aa5.35□□□□□ -1.55
CSMD3-201ENST00000297405 ZC3H18Q86VM9 953 aaKnown RBP5.35□□□□□ -1.55
CSMD3-201ENST00000297405 MRPS27Q92552 414 aaKnown RBP5.35□□□□□ -1.55
CSMD3-201ENST00000297405 GTF3C6Q969F1 213 aa5.35□□□□□ -1.55
CSMD3-201ENST00000297405 TRMT1Q9NXH9 659 aaKnown RBP5.35□□□□□ -1.55
CSMD3-201ENST00000297405 COMMD10Q9Y6G5 202 aa5.35□□□□□ -1.55
CSMD3-201ENST00000297405 RGS16O15492 202 aaPredicted RBP5.35□□□□□ -1.55
CSMD3-201ENST00000297405 GRK7Q8WTQ7 553 aa5.35□□□□□ -1.55
CSMD3-201ENST00000297405 APOEP02649 317 aa5.35□□□□□ -1.55
CSMD3-201ENST00000297405 PYGMP11217 842 aa5.35□□□□□ -1.55
CSMD3-201ENST00000297405 HSPA6P17066 643 aa5.35□□□□□ -1.55
CSMD3-201ENST00000297405 RAB14P61106 215 aa5.35□□□□□ -1.55
CSMD3-201ENST00000297405 PPP1R7Q15435 360 aa5.35□□□□□ -1.55
CSMD3-201ENST00000297405 SHROOM3Q8TF72 1996 aa5.35□□□□□ -1.55
CSMD3-201ENST00000297405 ATP2B1P20020 1258 aa5.35□□□□□ -1.55
CSMD3-201ENST00000297405 CCDC93Q567U6 631 aa5.35□□□□□ -1.55
CSMD3-201ENST00000297405 QKIQ96PU8 341 aaKnown RBP eCLIP5.35□□□□□ -1.55
CSMD3-201ENST00000297405 FAM135AQ9P2D6 1515 aa5.35□□□□□ -1.55
CSMD3-201ENST00000297405 E7EVH7 732 aa5.35□□□□□ -1.55
CSMD3-201ENST00000297405 APAF1O14727 1248 aa5.35□□□□□ -1.55
CSMD3-201ENST00000297405 DEAF1O75398 565 aaPredicted RBP5.35□□□□□ -1.55
CSMD3-201ENST00000297405 SLC44A4Q53GD3 710 aa5.35□□□□□ -1.55
CSMD3-201ENST00000297405 APBB1IPQ7Z5R6 666 aaPredicted RBP5.35□□□□□ -1.55
CSMD3-201ENST00000297405 ST13P5Q8NFI4 369 aaPredicted RBP5.35□□□□□ -1.55
CSMD3-201ENST00000297405 UTP6Q9NYH9 597 aaKnown RBP5.35□□□□□ -1.55
CSMD3-201ENST00000297405 ATP6V0A2Q9Y487 856 aa5.35□□□□□ -1.55
CSMD3-201ENST00000297405 PEG3Q9GZU2 1588 aa5.35□□□□□ -1.55
CSMD3-201ENST00000297405 ZNF839A8K0R7 811 aa5.35□□□□□ -1.55
CSMD3-201ENST00000297405 GOLGA8TH3BQL2 631 aa5.35□□□□□ -1.55
CSMD3-201ENST00000297405 GOLGA8HP0CJ92 632 aa5.35□□□□□ -1.55
CSMD3-201ENST00000297405 ATP6V0A4Q9HBG4 840 aa5.35□□□□□ -1.55
CSMD3-201ENST00000297405 EFCAB14O75071 495 aa5.35□□□□□ -1.55
CSMD3-201ENST00000297405 TTC4O95801 387 aa5.35□□□□□ -1.55
CSMD3-201ENST00000297405 TCP1P17987 556 aaKnown RBP5.35□□□□□ -1.55
CSMD3-201ENST00000297405 ITIH3Q06033 890 aa5.35□□□□□ -1.55
CSMD3-201ENST00000297405 CUL1Q13616 776 aa5.35□□□□□ -1.55
CSMD3-201ENST00000297405 PPP2R5BQ15173 497 aa5.35□□□□□ -1.55
CSMD3-201ENST00000297405 ARHGEF18Q6ZSZ5 1173 aa5.35□□□□□ -1.55
CSMD3-201ENST00000297405 C3orf20Q8ND61 904 aa5.35□□□□□ -1.55
CSMD3-201ENST00000297405 CCT6BQ92526 530 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms