RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 SART3Q15020 963 aaKnown RBP19.61■□□□□ 0.73
CPSF4-201ENST00000292476 SBK1Q52WX2 424 aa19.61■□□□□ 0.73
CPSF4-201ENST00000292476 STRIP1Q5VSL9 837 aa19.61■□□□□ 0.73
CPSF4-201ENST00000292476 PDZRN4Q6ZMN7 1036 aaPredicted RBP19.61■□□□□ 0.73
CPSF4-201ENST00000292476 TBC1D10CQ8IV04 446 aa19.61■□□□□ 0.73
CPSF4-201ENST00000292476 NECAB1Q8N987 351 aa19.61■□□□□ 0.73
CPSF4-201ENST00000292476 JDP2Q8WYK2 163 aa19.61■□□□□ 0.73
CPSF4-201ENST00000292476 OFD1O75665 1012 aa19.6■□□□□ 0.73
CPSF4-201ENST00000292476 USP5P45974 858 aa19.6■□□□□ 0.73
CPSF4-201ENST00000292476 TERF1P54274 439 aa19.6■□□□□ 0.73
CPSF4-201ENST00000292476 DNM1Q05193 864 aaKnown RBP19.6■□□□□ 0.73
CPSF4-201ENST00000292476 DOK7Q18PE1 504 aa19.6■□□□□ 0.73
CPSF4-201ENST00000292476 FBXW7Q969H0 707 aa19.6■□□□□ 0.73
CPSF4-201ENST00000292476 NBPF3Q9H094 633 aa19.6■□□□□ 0.73
CPSF4-201ENST00000292476 ZNF541Q9H0D2 1346 aa19.59■□□□□ 0.73
CPSF4-201ENST00000292476 DPY19L2Q6NUT2 758 aa19.59■□□□□ 0.73
CPSF4-201ENST00000292476 GTF3C6Q969F1 213 aa19.59■□□□□ 0.73
CPSF4-201ENST00000292476 LLPHQ9BRT6 129 aaKnown RBP19.59■□□□□ 0.73
CPSF4-201ENST00000292476 MRIQ9BWK5 157 aa19.59■□□□□ 0.73
CPSF4-201ENST00000292476 SCAND2PQ9GZW5 306 aaPredicted RBP19.59■□□□□ 0.73
CPSF4-201ENST00000292476 DCP1AQ9NPI6 582 aaPredicted RBP19.59■□□□□ 0.73
CPSF4-201ENST00000292476 GAKO14976 1311 aa19.59■□□□□ 0.73
CPSF4-201ENST00000292476 MINDY4BA8MYZ0 360 aa19.59■□□□□ 0.73
CPSF4-201ENST00000292476 DHX16O60231 1041 aaKnown RBP19.59■□□□□ 0.73
CPSF4-201ENST00000292476 PFKFB2O60825 505 aa19.59■□□□□ 0.73
CPSF4-201ENST00000292476 TMTC2Q8N394 836 aa19.59■□□□□ 0.73
CPSF4-201ENST00000292476 ESR2Q92731 530 aa19.59■□□□□ 0.73
CPSF4-201ENST00000292476 RRAGCQ9HB90 399 aa19.59■□□□□ 0.73
CPSF4-201ENST00000292476 ERICH2A1L162 156 aa19.58■□□□□ 0.72
CPSF4-201ENST00000292476 ECE2O60344 883 aa19.58■□□□□ 0.72
CPSF4-201ENST00000292476 DDNO94850 711 aaPredicted RBP19.58■□□□□ 0.72
CPSF4-201ENST00000292476 BTDP43251 543 aa19.58■□□□□ 0.72
CPSF4-201ENST00000292476 CTDSPL2Q05D32 466 aa19.58■□□□□ 0.72
CPSF4-201ENST00000292476 DIXDC1Q155Q3 683 aa19.58■□□□□ 0.72
CPSF4-201ENST00000292476 CTR9Q6PD62 1173 aa19.58■□□□□ 0.72
CPSF4-201ENST00000292476 NIM1KQ8IY84 436 aa19.58■□□□□ 0.72
CPSF4-201ENST00000292476 RNF214Q8ND24 703 aa19.58■□□□□ 0.72
CPSF4-201ENST00000292476 FUCA2Q9BTY2 467 aa19.58■□□□□ 0.72
CPSF4-201ENST00000292476 ANGEL1Q9UNK9 670 aaKnown RBP19.58■□□□□ 0.72
CPSF4-201ENST00000292476 KIF3AQ9Y496 699 aa19.58■□□□□ 0.72
CPSF4-201ENST00000292476 USP17L3A6NCW0 530 aa19.57■□□□□ 0.72
CPSF4-201ENST00000292476 USP17L4A6NCW7 530 aa19.57■□□□□ 0.72
CPSF4-201ENST00000292476 FZD9O00144 591 aa19.57■□□□□ 0.72
CPSF4-201ENST00000292476 TPM2P07951 284 aa19.57■□□□□ 0.72
CPSF4-201ENST00000292476 USP17L1Q7RTZ2 530 aa19.57■□□□□ 0.72
CPSF4-201ENST00000292476 LRRC2Q9BYS8 371 aa19.57■□□□□ 0.72
CPSF4-201ENST00000292476 B4E1Z4 1266 aa19.56■□□□□ 0.72
CPSF4-201ENST00000292476 USP17L12C9JPN9 530 aa19.56■□□□□ 0.72
CPSF4-201ENST00000292476 USP17L21D6R901 530 aa19.56■□□□□ 0.72
CPSF4-201ENST00000292476 KIF3CO14782 793 aa19.56■□□□□ 0.72
CPSF4-201ENST00000292476 LIFRP42702 1097 aa19.56■□□□□ 0.72
CPSF4-201ENST00000292476 HDLBPQ00341 1268 aaKnown RBP19.56■□□□□ 0.72
CPSF4-201ENST00000292476 PDE4BQ07343 736 aa19.56■□□□□ 0.72
CPSF4-201ENST00000292476 COL9A3Q14050 684 aaPredicted RBP19.56■□□□□ 0.72
CPSF4-201ENST00000292476 GRIK5Q16478 980 aa19.56■□□□□ 0.72
CPSF4-201ENST00000292476 HHIPL2Q6UWX4 724 aa19.56■□□□□ 0.72
CPSF4-201ENST00000292476 CDC37L1Q7L3B6 337 aa19.56■□□□□ 0.72
CPSF4-201ENST00000292476 DBNDD1Q9H9R9 158 aa19.56■□□□□ 0.72
CPSF4-201ENST00000292476 ZNF287Q9HBT7 754 aa19.56■□□□□ 0.72
CPSF4-201ENST00000292476 TOMM22Q9NS69 142 aa19.56■□□□□ 0.72
CPSF4-201ENST00000292476 TTF2Q9UNY4 1162 aaKnown RBP19.56■□□□□ 0.72
CPSF4-201ENST00000292476 FGRP09769 529 aa19.56■□□□□ 0.72
CPSF4-201ENST00000292476 APOBRQ0VD83 1088 aa19.56■□□□□ 0.72
CPSF4-201ENST00000292476 CHST3Q7LGC8 479 aa19.56■□□□□ 0.72
CPSF4-201ENST00000292476 SH3RF3Q8TEJ3 882 aaPredicted RBP19.56■□□□□ 0.72
CPSF4-201ENST00000292476 TEKT1Q969V4 418 aa19.56■□□□□ 0.72
CPSF4-201ENST00000292476 MCM9Q9NXL9 1143 aa19.56■□□□□ 0.72
CPSF4-201ENST00000292476 EIF2AK3Q9NZJ5 1116 aaKnown RBP19.56■□□□□ 0.72
CPSF4-201ENST00000292476 NEDD4P46934 1319 aa19.55■□□□□ 0.72
CPSF4-201ENST00000292476 KDM4AO75164 1064 aa19.55■□□□□ 0.72
CPSF4-201ENST00000292476 EIF6P56537 245 aaKnown RBP19.55■□□□□ 0.72
CPSF4-201ENST00000292476 ANTXR2P58335 489 aa19.55■□□□□ 0.72
CPSF4-201ENST00000292476 HMGN5P82970 282 aaKnown RBP19.55■□□□□ 0.72
CPSF4-201ENST00000292476 ZSCAN16Q9H4T2 348 aaPredicted RBP19.55■□□□□ 0.72
CPSF4-201ENST00000292476 ZSWIM5Q9P217 1185 aa19.55■□□□□ 0.72
CPSF4-201ENST00000292476 MYH2Q9UKX2 1941 aa19.54■□□□□ 0.72
CPSF4-201ENST00000292476 SH2B2O14492 632 aaPredicted RBP19.54■□□□□ 0.72
CPSF4-201ENST00000292476 PDIA3P30101 505 aaKnown RBP19.54■□□□□ 0.72
CPSF4-201ENST00000292476 STK3Q13188 491 aa19.54■□□□□ 0.72
CPSF4-201ENST00000292476 SYNE3Q6ZMZ3 975 aa19.54■□□□□ 0.72
CPSF4-201ENST00000292476 TEX11Q8IYF3 940 aa19.54■□□□□ 0.72
CPSF4-201ENST00000292476 MKRN1Q9UHC7 482 aaKnown RBP19.54■□□□□ 0.72
CPSF4-201ENST00000292476 GJA3Q9Y6H8 435 aa19.54■□□□□ 0.72
CPSF4-201ENST00000292476 MYO3BQ8WXR4 1341 aa19.54■□□□□ 0.72
CPSF4-201ENST00000292476 WDR90Q96KV7 1748 aa19.53■□□□□ 0.72
CPSF4-201ENST00000292476 IFIT3O14879 490 aaKnown RBP19.53■□□□□ 0.72
CPSF4-201ENST00000292476 ORC4O43929 436 aa19.53■□□□□ 0.72
CPSF4-201ENST00000292476 TMEM67Q5HYA8 995 aa19.53■□□□□ 0.72
CPSF4-201ENST00000292476 RRP12Q5JTH9 1297 aaKnown RBP19.53■□□□□ 0.72
CPSF4-201ENST00000292476 DACT2Q5SW24 774 aa19.53■□□□□ 0.72
CPSF4-201ENST00000292476 CYB5R4Q7L1T6 521 aa19.53■□□□□ 0.72
CPSF4-201ENST00000292476 TTC6Q86TZ1 520 aa19.53■□□□□ 0.72
CPSF4-201ENST00000292476 SGMS1Q86VZ5 419 aa19.53■□□□□ 0.72
CPSF4-201ENST00000292476 CERS5Q8N5B7 392 aa19.53■□□□□ 0.72
CPSF4-201ENST00000292476 SMARCC2Q8TAQ2 1214 aa19.53■□□□□ 0.72
CPSF4-201ENST00000292476 UBAC1Q9BSL1 405 aa19.53■□□□□ 0.72
CPSF4-201ENST00000292476 ZNRF3Q9ULT6 936 aa19.53■□□□□ 0.72
CPSF4-201ENST00000292476 NAP1L2Q9ULW6 460 aaPredicted RBP19.53■□□□□ 0.72
CPSF4-201ENST00000292476 KLF18A0A0U1RQI7 1052 aa19.52■□□□□ 0.72
CPSF4-201ENST00000292476 IQCA1Q86XH1 822 aa19.52■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 86.4 ms