RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 FAM163AQ96GL9 167 aaPredicted RBP17.82■□□□□ 0.44
SF3B4-201ENST00000271628 ZSCAN10Q96SZ4 725 aaPredicted RBP17.82■□□□□ 0.44
SF3B4-201ENST00000271628 MYH15Q9Y2K3 1946 aa17.82■□□□□ 0.44
SF3B4-201ENST00000271628 STK36Q9NRP7 1315 aa17.82■□□□□ 0.44
SF3B4-201ENST00000271628 LAMB1P07942 1786 aa17.81■□□□□ 0.44
SF3B4-201ENST00000271628 RANBP6O60518 1105 aaKnown RBP17.81■□□□□ 0.44
SF3B4-201ENST00000271628 IFNAR1P17181 557 aa17.81■□□□□ 0.44
SF3B4-201ENST00000271628 FOSBP53539 338 aa17.81■□□□□ 0.44
SF3B4-201ENST00000271628 SEC23AQ15436 765 aa17.81■□□□□ 0.44
SF3B4-201ENST00000271628 WASF1Q92558 559 aa17.81■□□□□ 0.44
SF3B4-201ENST00000271628 STK32BQ9NY57 414 aa17.81■□□□□ 0.44
SF3B4-201ENST00000271628 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.81■□□□□ 0.44
SF3B4-201ENST00000271628 CYP2D7A0A087X1C5 515 aa17.81■□□□□ 0.44
SF3B4-201ENST00000271628 PLCG2P16885 1265 aa17.81■□□□□ 0.44
SF3B4-201ENST00000271628 GUCY1B3Q02153 619 aa17.81■□□□□ 0.44
SF3B4-201ENST00000271628 MFSD14BQ5SR56 506 aa17.81■□□□□ 0.44
SF3B4-201ENST00000271628 DPP8Q6V1X1 898 aaPredicted RBP17.81■□□□□ 0.44
SF3B4-201ENST00000271628 BRAPQ7Z569 592 aa17.81■□□□□ 0.44
SF3B4-201ENST00000271628 CAMKK2Q96RR4 588 aa17.81■□□□□ 0.44
SF3B4-201ENST00000271628 FAM217BQ9NTX9 383 aaPredicted RBP17.81■□□□□ 0.44
SF3B4-201ENST00000271628 MCM9Q9NXL9 1143 aa17.81■□□□□ 0.44
SF3B4-201ENST00000271628 MKRN1Q9UHC7 482 aaKnown RBP17.81■□□□□ 0.44
SF3B4-201ENST00000271628 SUGT1Q9Y2Z0 365 aa17.81■□□□□ 0.44
SF3B4-201ENST00000271628 MYH2Q9UKX2 1941 aa17.81■□□□□ 0.44
SF3B4-201ENST00000271628 SSRP1Q08945 709 aaKnown RBP17.8■□□□□ 0.44
SF3B4-201ENST00000271628 RTN1Q16799 776 aa17.8■□□□□ 0.44
SF3B4-201ENST00000271628 CCDC144CPQ8IYA2 1237 aa17.8■□□□□ 0.44
SF3B4-201ENST00000271628 ZNF654Q8IZM8 581 aa17.8■□□□□ 0.44
SF3B4-201ENST00000271628 ALG1Q9BT22 464 aa17.8■□□□□ 0.44
SF3B4-201ENST00000271628 NOL7Q9UMY1 257 aaKnown RBP17.8■□□□□ 0.44
SF3B4-201ENST00000271628 GPR75-ASB3A0A0A6YYF3 556 aa17.79■□□□□ 0.44
SF3B4-201ENST00000271628 DIXDC1Q155Q3 683 aa17.79■□□□□ 0.44
SF3B4-201ENST00000271628 EZH2Q15910 746 aaKnown RBP17.79■□□□□ 0.44
SF3B4-201ENST00000271628 IFIT1BQ5T764 474 aaKnown RBP17.79■□□□□ 0.44
SF3B4-201ENST00000271628 TRIM22Q8IYM9 498 aa17.79■□□□□ 0.44
SF3B4-201ENST00000271628 FANCBQ8NB91 859 aa17.79■□□□□ 0.44
SF3B4-201ENST00000271628 SH3RF3Q8TEJ3 882 aaPredicted RBP17.79■□□□□ 0.44
SF3B4-201ENST00000271628 EYA3Q99504 573 aa17.79■□□□□ 0.44
SF3B4-201ENST00000271628 MYL10Q9BUA6 226 aa17.79■□□□□ 0.44
SF3B4-201ENST00000271628 RTFDC1Q9BY42 306 aaPredicted RBP17.79■□□□□ 0.44
SF3B4-201ENST00000271628 RCOR1Q9UKL0 485 aa17.79■□□□□ 0.44
SF3B4-201ENST00000271628 H0YIN7 160 aa17.79■□□□□ 0.44
SF3B4-201ENST00000271628 CALM1P0DP23 149 aa17.79■□□□□ 0.44
SF3B4-201ENST00000271628 CALM2P0DP24 149 aa17.79■□□□□ 0.44
SF3B4-201ENST00000271628 CALM3P0DP25 149 aa17.79■□□□□ 0.44
SF3B4-201ENST00000271628 TRIM29Q14134 588 aa17.79■□□□□ 0.44
SF3B4-201ENST00000271628 GRIK5Q16478 980 aa17.79■□□□□ 0.44
SF3B4-201ENST00000271628 C12orf60Q5U649 245 aa17.79■□□□□ 0.44
SF3B4-201ENST00000271628 MSL1Q68DK7 614 aa17.79■□□□□ 0.44
SF3B4-201ENST00000271628 FMNL1O95466 1100 aaPredicted RBP17.78■□□□□ 0.44
SF3B4-201ENST00000271628 EN1Q05925 392 aaPredicted RBP17.78■□□□□ 0.44
SF3B4-201ENST00000271628 STYK1Q6J9G0 422 aa17.78■□□□□ 0.44
SF3B4-201ENST00000271628 CATIPQ7Z7H3 387 aa17.78■□□□□ 0.44
SF3B4-201ENST00000271628 ENAHQ8N8S7 591 aaPredicted RBP17.78■□□□□ 0.44
SF3B4-201ENST00000271628 PHKBQ93100 1093 aa17.78■□□□□ 0.44
SF3B4-201ENST00000271628 ZNF622Q969S3 477 aaKnown RBP eCLIP17.78■□□□□ 0.44
SF3B4-201ENST00000271628 TSPY26PQ9H489 355 aa17.78■□□□□ 0.44
SF3B4-201ENST00000271628 PRDM1O75626 825 aa17.78■□□□□ 0.44
SF3B4-201ENST00000271628 BTDP43251 543 aa17.78■□□□□ 0.44
SF3B4-201ENST00000271628 QSER1Q2KHR3 1735 aa17.77■□□□□ 0.44
SF3B4-201ENST00000271628 SMIM22K7EJ46 135 aa17.77■□□□□ 0.44
SF3B4-201ENST00000271628 RIMBP2O15034 1052 aa17.77■□□□□ 0.44
SF3B4-201ENST00000271628 GTF2IP78347 998 aa17.77■□□□□ 0.44
SF3B4-201ENST00000271628 TPRNQ4KMQ1 711 aa17.77■□□□□ 0.44
SF3B4-201ENST00000271628 C2CD5Q86YS7 1000 aa17.77■□□□□ 0.44
SF3B4-201ENST00000271628 NUP133Q8WUM0 1156 aa17.77■□□□□ 0.44
SF3B4-201ENST00000271628 SLC26A6Q9BXS9 759 aa17.77■□□□□ 0.44
SF3B4-201ENST00000271628 ZNF287Q9HBT7 754 aa17.77■□□□□ 0.44
SF3B4-201ENST00000271628 COL11A2P13942 1736 aaPredicted RBP17.77■□□□□ 0.43
SF3B4-201ENST00000271628 TSPY2A6NKD2 308 aa17.76■□□□□ 0.43
SF3B4-201ENST00000271628 USP17L8P0C7I0 530 aa17.76■□□□□ 0.43
SF3B4-201ENST00000271628 OTUD7BQ6GQQ9 843 aa17.76■□□□□ 0.43
SF3B4-201ENST00000271628 TGFBRAP1Q8WUH2 860 aa17.76■□□□□ 0.43
SF3B4-201ENST00000271628 USP28Q96RU2 1077 aa17.76■□□□□ 0.43
SF3B4-201ENST00000271628 RBM28Q9NW13 759 aaKnown RBP17.76■□□□□ 0.43
SF3B4-201ENST00000271628 GAKO14976 1311 aa17.76■□□□□ 0.43
SF3B4-201ENST00000271628 DLEC1Q9Y238 1755 aa17.76■□□□□ 0.43
SF3B4-201ENST00000271628 G3V3G9 751 aa17.76■□□□□ 0.43
SF3B4-201ENST00000271628 ZNF500O60304 480 aaPredicted RBP17.76■□□□□ 0.43
SF3B4-201ENST00000271628 KIF23Q02241 960 aaPredicted RBP17.76■□□□□ 0.43
SF3B4-201ENST00000271628 CCDC178Q5BJE1 867 aa17.76■□□□□ 0.43
SF3B4-201ENST00000271628 DCAF8Q5TAQ9 597 aa17.76■□□□□ 0.43
SF3B4-201ENST00000271628 KRT40Q6A162 431 aa17.76■□□□□ 0.43
SF3B4-201ENST00000271628 ILDR1Q86SU0 546 aaPredicted RBP17.76■□□□□ 0.43
SF3B4-201ENST00000271628 CRACR2BQ8N4Y2 399 aaPredicted RBP17.76■□□□□ 0.43
SF3B4-201ENST00000271628 RTEL1Q9NZ71 1219 aa17.76■□□□□ 0.43
SF3B4-201ENST00000271628 ROBO3Q96MS0 1386 aa17.75■□□□□ 0.43
SF3B4-201ENST00000271628 OFD1O75665 1012 aa17.75■□□□□ 0.43
SF3B4-201ENST00000271628 DDAH1O94760 285 aa17.75■□□□□ 0.43
SF3B4-201ENST00000271628 DEXIO95424 95 aa17.75■□□□□ 0.43
SF3B4-201ENST00000271628 CYP2D6P10635 497 aa17.75■□□□□ 0.43
SF3B4-201ENST00000271628 DDX19AQ9NUU7 478 aaKnown RBP17.75■□□□□ 0.43
SF3B4-201ENST00000271628 CCDC39Q9UFE4 941 aa17.75■□□□□ 0.43
SF3B4-201ENST00000271628 POLR3DP05423 398 aaPredicted RBP17.75■□□□□ 0.43
SF3B4-201ENST00000271628 CEBPZQ03701 1054 aaKnown RBP17.75■□□□□ 0.43
SF3B4-201ENST00000271628 SF3B2Q13435 895 aaKnown RBP17.75■□□□□ 0.43
SF3B4-201ENST00000271628 MYSM1Q5VVJ2 828 aa17.75■□□□□ 0.43
SF3B4-201ENST00000271628 BICD2Q8TD16 824 aa17.75■□□□□ 0.43
SF3B4-201ENST00000271628 CNKSR1Q969H4 720 aa17.75■□□□□ 0.43
SF3B4-201ENST00000271628 PGBD1Q96JS3 809 aa17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms