RNA–Protein interactions for RNA: ENST00000270061.11

SSBP4-201, Transcript of single stranded DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SSBP4, Length 1,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-201ENST00000270061 A0A0D9SFI3 127 aa29.34■■■□□ 2.29
SSBP4-201ENST00000270061 IGSF3O75054 1194 aa29.34■■■□□ 2.29
SSBP4-201ENST00000270061 INHBEP58166 350 aa29.34■■■□□ 2.29
SSBP4-201ENST00000270061 PICALMQ13492 652 aa29.34■■■□□ 2.29
SSBP4-201ENST00000270061 NOL10Q9BSC4 688 aaKnown RBP29.34■■■□□ 2.29
SSBP4-201ENST00000270061 GJA5P36382 358 aa29.34■■■□□ 2.29
SSBP4-201ENST00000270061 ZSCAN29Q8IWY8 852 aaPredicted RBP29.34■■■□□ 2.29
SSBP4-201ENST00000270061 PIH1D3Q9NQM4 214 aaKnown RBP29.34■■■□□ 2.29
SSBP4-201ENST00000270061 DDX4Q9NQI0 724 aaKnown RBP29.33■■■□□ 2.29
SSBP4-201ENST00000270061 CDK5RAP2Q96SN8 1893 aa29.32■■■□□ 2.28
SSBP4-201ENST00000270061 ZKSCAN4Q969J2 545 aaPredicted RBP29.32■■■□□ 2.28
SSBP4-201ENST00000270061 PALD1Q9ULE6 856 aa29.32■■■□□ 2.28
SSBP4-201ENST00000270061 CCDC171Q6TFL3 1326 aa29.32■■■□□ 2.28
SSBP4-201ENST00000270061 LRRFIP1Q32MZ4 808 aaKnown RBP29.31■■■□□ 2.28
SSBP4-201ENST00000270061 IDH1O75874 414 aaKnown RBP29.31■■■□□ 2.28
SSBP4-201ENST00000270061 BAG3O95817 575 aa29.31■■■□□ 2.28
SSBP4-201ENST00000270061 PTH1RQ03431 593 aa29.31■■■□□ 2.28
SSBP4-201ENST00000270061 CNKSR2Q8WXI2 1034 aa29.31■■■□□ 2.28
SSBP4-201ENST00000270061 MAP4K1Q92918 833 aa29.31■■■□□ 2.28
SSBP4-201ENST00000270061 NPM3O75607 178 aaKnown RBP29.3■■■□□ 2.28
SSBP4-201ENST00000270061 KCNB2Q92953 911 aa29.3■■■□□ 2.28
SSBP4-201ENST00000270061 HELLSQ9NRZ9 838 aa29.3■■■□□ 2.28
SSBP4-201ENST00000270061 AATFQ9NY61 560 aaKnown RBP eCLIP29.3■■■□□ 2.28
SSBP4-201ENST00000270061 SNCAIPQ9Y6H5 919 aa29.3■■■□□ 2.28
SSBP4-201ENST00000270061 MCMDC2Q4G0Z9 681 aa29.29■■■□□ 2.28
SSBP4-201ENST00000270061 OTUD5Q96G74 571 aa29.29■■■□□ 2.28
SSBP4-201ENST00000270061 FOCADQ5VW36 1801 aa29.29■■■□□ 2.28
SSBP4-201ENST00000270061 ST18O60284 1047 aa29.29■■■□□ 2.28
SSBP4-201ENST00000270061 CD2BP2O95400 341 aaKnown RBP29.29■■■□□ 2.28
SSBP4-201ENST00000270061 ALDH1A1P00352 501 aa29.29■■■□□ 2.28
SSBP4-201ENST00000270061 SH3BP5LQ7L8J4 393 aa29.29■■■□□ 2.28
SSBP4-201ENST00000270061 IFNL1Q8IU54 200 aa29.29■■■□□ 2.28
SSBP4-201ENST00000270061 TEX11Q8IYF3 940 aa29.29■■■□□ 2.28
SSBP4-201ENST00000270061 ANTXR1Q9H6X2 564 aa29.29■■■□□ 2.28
SSBP4-201ENST00000270061 ZNF112Q9UJU3 913 aa29.29■■■□□ 2.28
SSBP4-201ENST00000270061 DDTLA6NHG4 134 aaPredicted RBP29.28■■■□□ 2.28
SSBP4-201ENST00000270061 SPDYE5A6NIY4 337 aa29.28■■■□□ 2.28
SSBP4-201ENST00000270061 K7ELQ4 463 aaPredicted RBP29.28■■■□□ 2.28
SSBP4-201ENST00000270061 TBC1D8O95759 1140 aa29.28■■■□□ 2.28
SSBP4-201ENST00000270061 PLCG2P16885 1265 aa29.28■■■□□ 2.28
SSBP4-201ENST00000270061 INPP5BP32019 993 aa29.28■■■□□ 2.28
SSBP4-201ENST00000270061 ADGRA1Q86SQ6 560 aa29.28■■■□□ 2.28
SSBP4-201ENST00000270061 ERO1BQ86YB8 467 aa29.28■■■□□ 2.28
SSBP4-201ENST00000270061 ATRNL1Q5VV63 1379 aa29.27■■■□□ 2.28
SSBP4-201ENST00000270061 RNF113AO15541 343 aaKnown RBP29.27■■■□□ 2.28
SSBP4-201ENST00000270061 ZFYP08048 801 aaPredicted RBP29.27■■■□□ 2.28
SSBP4-201ENST00000270061 MAP3K12Q12852 859 aa29.27■■■□□ 2.28
SSBP4-201ENST00000270061 ZMYM1Q5SVZ6 1142 aa29.27■■■□□ 2.28
SSBP4-201ENST00000270061 SH3RF3Q8TEJ3 882 aaPredicted RBP29.27■■■□□ 2.28
SSBP4-201ENST00000270061 PPP4CP60510 307 aa29.26■■■□□ 2.28
SSBP4-201ENST00000270061 NECTIN1Q15223 517 aa29.26■■■□□ 2.28
SSBP4-201ENST00000270061 TTF1Q15361 905 aaPredicted RBP29.26■■■□□ 2.28
SSBP4-201ENST00000270061 CYP7A1P22680 504 aa29.26■■■□□ 2.27
SSBP4-201ENST00000270061 ZNF589Q86UQ0 364 aaPredicted RBP29.26■■■□□ 2.27
SSBP4-201ENST00000270061 SNX14Q9Y5W7 946 aa29.26■■■□□ 2.27
SSBP4-201ENST00000270061 IGF2BP3O00425 579 aaKnown RBP eCLIP29.25■■■□□ 2.27
SSBP4-201ENST00000270061 GTF2A2P52657 109 aa29.25■■■□□ 2.27
SSBP4-201ENST00000270061 OTUD7BQ6GQQ9 843 aa29.25■■■□□ 2.27
SSBP4-201ENST00000270061 MAGEB6Q8N7X4 407 aa29.25■■■□□ 2.27
SSBP4-201ENST00000270061 MS4A4AQ96JQ5 239 aa29.25■■■□□ 2.27
SSBP4-201ENST00000270061 OSBPL5Q9H0X9 879 aaPredicted RBP29.25■■■□□ 2.27
SSBP4-201ENST00000270061 TESPA1A2RU30 521 aaPredicted RBP29.24■■■□□ 2.27
SSBP4-201ENST00000270061 CFHR5Q9BXR6 569 aa29.24■■■□□ 2.27
SSBP4-201ENST00000270061 COL2A1P02458 1487 aaPredicted RBP29.24■■■□□ 2.27
SSBP4-201ENST00000270061 TMED8Q6PL24 325 aaPredicted RBP29.24■■■□□ 2.27
SSBP4-201ENST00000270061 RBM8AQ9Y5S9 174 aaKnown RBP29.24■■■□□ 2.27
SSBP4-201ENST00000270061 MAP3K10Q02779 954 aa29.23■■■□□ 2.27
SSBP4-201ENST00000270061 MCM2P49736 904 aa29.22■■■□□ 2.27
SSBP4-201ENST00000270061 PPATQ06203 517 aa29.22■■■□□ 2.27
SSBP4-201ENST00000270061 PPIL2Q13356 520 aa29.22■■■□□ 2.27
SSBP4-201ENST00000270061 CCL15-CCL14A0A0B4J2E2 113 aa29.21■■■□□ 2.27
SSBP4-201ENST00000270061 PHF20L1A8MW92 1017 aa29.21■■■□□ 2.27
SSBP4-201ENST00000270061 IRF6O14896 467 aa29.21■■■□□ 2.27
SSBP4-201ENST00000270061 CHGBP05060 677 aa29.21■■■□□ 2.27
SSBP4-201ENST00000270061 NEK4P51957 841 aa29.21■■■□□ 2.27
SSBP4-201ENST00000270061 CCL15Q16663 113 aa29.21■■■□□ 2.27
SSBP4-201ENST00000270061 NOL9Q5SY16 702 aaKnown RBP29.21■■■□□ 2.27
SSBP4-201ENST00000270061 RASEFQ8IZ41 740 aa29.21■■■□□ 2.27
SSBP4-201ENST00000270061 PTPN18Q99952 460 aa29.21■■■□□ 2.27
SSBP4-201ENST00000270061 DOCK1Q14185 1865 aa29.21■■■□□ 2.27
SSBP4-201ENST00000270061 ZSCAN25Q6NSZ9 544 aa29.21■■■□□ 2.27
SSBP4-201ENST00000270061 TGFBRAP1Q8WUH2 860 aa29.21■■■□□ 2.27
SSBP4-201ENST00000270061 SEC62Q99442 399 aaKnown RBP29.21■■■□□ 2.27
SSBP4-201ENST00000270061 DDX24Q9GZR7 859 aaKnown RBP eCLIP29.21■■■□□ 2.276e-8■■■■■ 34.3
SSBP4-201ENST00000270061 MYH1P12882 1939 aa29.2■■■□□ 2.27
SSBP4-201ENST00000270061 NOM1Q5C9Z4 860 aaKnown RBP29.2■■■□□ 2.26
SSBP4-201ENST00000270061 CERS3Q8IU89 383 aa29.2■■■□□ 2.26
SSBP4-201ENST00000270061 MIGA1Q8NAN2 632 aa29.2■■■□□ 2.26
SSBP4-201ENST00000270061 BRI3BPQ8WY22 251 aa29.2■■■□□ 2.26
SSBP4-201ENST00000270061 MYH7P12883 1935 aa29.2■■■□□ 2.26
SSBP4-201ENST00000270061 GPR25O00155 361 aa29.19■■■□□ 2.26
SSBP4-201ENST00000270061 TBC1D12O60347 775 aa29.19■■■□□ 2.26
SSBP4-201ENST00000270061 DYNLL1P63167 89 aaKnown RBP29.19■■■□□ 2.26
SSBP4-201ENST00000270061 SNAPC2Q13487 334 aa29.19■■■□□ 2.26
SSBP4-201ENST00000270061 CREB3L3Q68CJ9 461 aa29.19■■■□□ 2.26
SSBP4-201ENST00000270061 ZNF296Q8WUU4 475 aaPredicted RBP29.19■■■□□ 2.26
SSBP4-201ENST00000270061 TM6SF1Q9BZW5 370 aa29.19■■■□□ 2.26
SSBP4-201ENST00000270061 SLURP2P0DP57 97 aa29.18■■■□□ 2.26
SSBP4-201ENST00000270061 CETPP11597 493 aa29.18■■■□□ 2.26
SSBP4-201ENST00000270061 RNF20Q5VTR2 975 aa29.18■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms