RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.52■□□□□ 0.088e-8■■□□□ 11.7
LDLR-201ENST00000252444 PSMA7O14818 248 aa15.52■□□□□ 0.07
LDLR-201ENST00000252444 TGFBRAP1Q8WUH2 860 aa15.52■□□□□ 0.07
LDLR-201ENST00000252444 FAM227BQ96M60 508 aa15.52■□□□□ 0.07
LDLR-201ENST00000252444 TAOK3Q9H2K8 898 aa15.52■□□□□ 0.07
LDLR-201ENST00000252444 TRAPPC10P48553 1259 aa15.52■□□□□ 0.07
LDLR-201ENST00000252444 NLRX1Q86UT6 975 aa15.52■□□□□ 0.07
LDLR-201ENST00000252444 NRXN3Q9Y4C0 1643 aa15.51■□□□□ 0.07
LDLR-201ENST00000252444 ARID4AP29374 1257 aaPredicted RBP15.51■□□□□ 0.07
LDLR-201ENST00000252444 SULF1Q8IWU6 871 aa15.51■□□□□ 0.07
LDLR-201ENST00000252444 YEATS4O95619 227 aa15.51■□□□□ 0.07
LDLR-201ENST00000252444 FDX1P10109 184 aa15.51■□□□□ 0.07
LDLR-201ENST00000252444 BCAMP50895 628 aa15.51■□□□□ 0.07
LDLR-201ENST00000252444 RCSD1Q6JBY9 416 aa15.51■□□□□ 0.07
LDLR-201ENST00000252444 KRT26Q7Z3Y9 468 aa15.51■□□□□ 0.07
LDLR-201ENST00000252444 ERLIN2O94905 339 aa15.51■□□□□ 0.07
LDLR-201ENST00000252444 CAMTA2O94983 1202 aa15.51■□□□□ 0.07
LDLR-201ENST00000252444 COPB2P35606 906 aa15.51■□□□□ 0.07
LDLR-201ENST00000252444 WDR78Q5VTH9 848 aa15.51■□□□□ 0.07
LDLR-201ENST00000252444 NALCNQ8IZF0 1738 aa15.51■□□□□ 0.07
LDLR-201ENST00000252444 GTF3C6Q969F1 213 aa15.51■□□□□ 0.07
LDLR-201ENST00000252444 GYG1P46976 350 aa15.51■□□□□ 0.07
LDLR-201ENST00000252444 PXDNQ92626 1479 aa15.5■□□□□ 0.07
LDLR-201ENST00000252444 CSF1RP07333 972 aa15.5■□□□□ 0.07
LDLR-201ENST00000252444 RRAGBQ5VZM2 374 aa15.5■□□□□ 0.07
LDLR-201ENST00000252444 PAXIP1Q6ZW49 1069 aaPredicted RBP15.5■□□□□ 0.07
LDLR-201ENST00000252444 FAM160B2Q86V87 743 aa15.5■□□□□ 0.07
LDLR-201ENST00000252444 CNKSR2Q8WXI2 1034 aa15.5■□□□□ 0.07
LDLR-201ENST00000252444 JAKMIP3Q5VZ66 844 aa15.5■□□□□ 0.07
LDLR-201ENST00000252444 APOBEC3FQ8IUX4 373 aaKnown RBP15.5■□□□□ 0.07
LDLR-201ENST00000252444 PHKA1P46020 1223 aa15.5■□□□□ 0.07
LDLR-201ENST00000252444 SLC17A8Q8NDX2 589 aa15.5■□□□□ 0.07
LDLR-201ENST00000252444 RGS22Q8NE09 1264 aa15.5■□□□□ 0.07
LDLR-201ENST00000252444 KANSL2Q9H9L4 492 aa15.5■□□□□ 0.07
LDLR-201ENST00000252444 H0YCG3 227 aa15.5■□□□□ 0.07
LDLR-201ENST00000252444 ORC2Q13416 577 aaPredicted RBP15.5■□□□□ 0.07
LDLR-201ENST00000252444 LSG1Q9H089 658 aaKnown RBP15.5■□□□□ 0.07
LDLR-201ENST00000252444 SAP30BPQ9UHR5 308 aaKnown RBP15.5■□□□□ 0.07
LDLR-201ENST00000252444 GSPT1P15170 499 aaKnown RBP15.49■□□□□ 0.07
LDLR-201ENST00000252444 TFAP4Q01664 338 aa15.49■□□□□ 0.07
LDLR-201ENST00000252444 CERKLQ49MI3 558 aaPredicted RBP15.49■□□□□ 0.07
LDLR-201ENST00000252444 ARMC9Q7Z3E5 817 aa15.49■□□□□ 0.07
LDLR-201ENST00000252444 CCDC144CPQ8IYA2 1237 aa15.49■□□□□ 0.07
LDLR-201ENST00000252444 CCDC112Q8NEF3 446 aa15.49■□□□□ 0.07
LDLR-201ENST00000252444 ALDH8A1Q9H2A2 487 aaPredicted RBP15.49■□□□□ 0.07
LDLR-201ENST00000252444 GPR162Q16538 588 aa15.49■□□□□ 0.07
LDLR-201ENST00000252444 IFI16Q16666 785 aaKnown RBP15.49■□□□□ 0.07
LDLR-201ENST00000252444 ZNF654Q8IZM8 581 aa15.49■□□□□ 0.07
LDLR-201ENST00000252444 EHBP1Q8NDI1 1231 aa15.49■□□□□ 0.07
LDLR-201ENST00000252444 NT5C3AQ9H0P0 336 aa15.49■□□□□ 0.07
LDLR-201ENST00000252444 PODXL2Q9NZ53 605 aa15.49■□□□□ 0.07
LDLR-201ENST00000252444 EXOC7Q9UPT5 735 aa15.49■□□□□ 0.07
LDLR-201ENST00000252444 IVNS1ABPQ9Y6Y0 642 aa15.49■□□□□ 0.07
LDLR-201ENST00000252444 EXOC8Q8IYI6 725 aa15.49■□□□□ 0.07
LDLR-201ENST00000252444 SPA17Q15506 151 aa15.49■□□□□ 0.07
LDLR-201ENST00000252444 CCDC65Q8IXS2 484 aa15.49■□□□□ 0.07
LDLR-201ENST00000252444 CCNA1P78396 465 aa15.48■□□□□ 0.07
LDLR-201ENST00000252444 GUCY1B3Q02153 619 aa15.48■□□□□ 0.07
LDLR-201ENST00000252444 MAPKAPK5Q8IW41 473 aa15.48■□□□□ 0.07
LDLR-201ENST00000252444 FBXO41Q8TF61 875 aa15.48■□□□□ 0.07
LDLR-201ENST00000252444 PI4KBQ9UBF8 816 aa15.48■□□□□ 0.07
LDLR-201ENST00000252444 PDS5AQ29RF7 1337 aaKnown RBP15.48■□□□□ 0.07
LDLR-201ENST00000252444 BCL9O00512 1426 aa15.48■□□□□ 0.07
LDLR-201ENST00000252444 KRT13P13646 458 aa15.48■□□□□ 0.07
LDLR-201ENST00000252444 RPL13P26373 211 aaKnown RBP15.48■□□□□ 0.07
LDLR-201ENST00000252444 SLC10A5Q5PT55 438 aa15.48■□□□□ 0.07
LDLR-201ENST00000252444 SLFN12Q8IYM2 578 aa15.48■□□□□ 0.07
LDLR-201ENST00000252444 NECAB1Q8N987 351 aa15.48■□□□□ 0.07
LDLR-201ENST00000252444 OTUD7AQ8TE49 926 aaPredicted RBP15.48■□□□□ 0.07
LDLR-201ENST00000252444 TOPAZ1Q8N9V7 1692 aa15.48■□□□□ 0.07
LDLR-201ENST00000252444 PNPLA7Q6ZV29 1317 aa15.48■□□□□ 0.07
LDLR-201ENST00000252444 CFAP100Q494V2 611 aa15.48■□□□□ 0.07
LDLR-201ENST00000252444 RNF26Q9BY78 433 aaPredicted RBP15.48■□□□□ 0.07
LDLR-201ENST00000252444 SAMM50Q9Y512 469 aa15.48■□□□□ 0.07
LDLR-201ENST00000252444 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.48■□□□□ 0.07
LDLR-201ENST00000252444 ARHGAP27Q6ZUM4 889 aa15.48■□□□□ 0.07
LDLR-201ENST00000252444 SFPQP23246 707 aaKnown RBP eCLIP15.47■□□□□ 0.07
LDLR-201ENST00000252444 LIFRP42702 1097 aa15.47■□□□□ 0.07
LDLR-201ENST00000252444 GNPTABQ3T906 1256 aa15.47■□□□□ 0.07
LDLR-201ENST00000252444 CDAN1Q8IWY9 1227 aa15.47■□□□□ 0.07
LDLR-201ENST00000252444 CCDC82Q8N4S0 544 aa15.47■□□□□ 0.07
LDLR-201ENST00000252444 PPP1R18Q6NYC8 613 aa15.47■□□□□ 0.07
LDLR-201ENST00000252444 LRSAM1Q6UWE0 723 aa15.47■□□□□ 0.07
LDLR-201ENST00000252444 USO1O60763 962 aaKnown RBP15.47■□□□□ 0.07
LDLR-201ENST00000252444 OSBPP22059 807 aa15.47■□□□□ 0.07
LDLR-201ENST00000252444 IRX3P78415 501 aaPredicted RBP15.47■□□□□ 0.07
LDLR-201ENST00000252444 TBC1D9BQ66K14 1250 aa15.47■□□□□ 0.07
LDLR-201ENST00000252444 MSL1Q68DK7 614 aa15.47■□□□□ 0.07
LDLR-201ENST00000252444 CCDC174Q6PII3 467 aa15.47■□□□□ 0.07
LDLR-201ENST00000252444 CAGE1Q8TC20 777 aa15.47■□□□□ 0.07
LDLR-201ENST00000252444 SH3GLB2Q9NR46 395 aa15.47■□□□□ 0.07
LDLR-201ENST00000252444 FOXO4P98177 505 aa15.47■□□□□ 0.07
LDLR-201ENST00000252444 ABCB5Q2M3G0 1257 aa15.47■□□□□ 0.07
LDLR-201ENST00000252444 CCDC40Q4G0X9 1142 aa15.47■□□□□ 0.07
LDLR-201ENST00000252444 FAM43AQ8N2R8 423 aa15.47■□□□□ 0.07
LDLR-201ENST00000252444 MINPP1Q9UNW1 487 aa15.47■□□□□ 0.07
LDLR-201ENST00000252444 TTLL1O95922 423 aa15.47■□□□□ 0.07
LDLR-201ENST00000252444 GCFC2P16383 781 aaKnown RBP15.47■□□□□ 0.07
LDLR-201ENST00000252444 IWS1Q96ST2 819 aa15.47■□□□□ 0.07
LDLR-201ENST00000252444 PRAMEF22A3QJZ6 481 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms