RNA–Protein interactions for RNA: ENST00000247020.8

SDF2-201, Transcript of stromal cell derived factor 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDF2, Length 1,568 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF2-201ENST00000247020 TAOK2Q9UL54 1235 aa16.64■□□□□ 0.25
SDF2-201ENST00000247020 CYP2D7A0A087X1C5 515 aa16.63■□□□□ 0.25
SDF2-201ENST00000247020 CDKL5O76039 1030 aa16.63■□□□□ 0.25
SDF2-201ENST00000247020 F13A1P00488 732 aa16.63■□□□□ 0.25
SDF2-201ENST00000247020 USP17L8P0C7I0 530 aa16.63■□□□□ 0.25
SDF2-201ENST00000247020 METAP2P50579 478 aaKnown RBP eCLIP16.63■□□□□ 0.25
SDF2-201ENST00000247020 SEC23AQ15436 765 aa16.63■□□□□ 0.25
SDF2-201ENST00000247020 CPLX2Q6PUV4 134 aaKnown RBP16.63■□□□□ 0.25
SDF2-201ENST00000247020 NFXL1Q6ZNB6 911 aa16.63■□□□□ 0.25
SDF2-201ENST00000247020 FAM184AQ8NB25 1140 aa16.63■□□□□ 0.25
SDF2-201ENST00000247020 NKX2-3Q8TAU0 364 aa16.63■□□□□ 0.25
SDF2-201ENST00000247020 NAP1L2Q9ULW6 460 aaPredicted RBP16.63■□□□□ 0.25
SDF2-201ENST00000247020 MTMR6Q9Y217 621 aa16.63■□□□□ 0.25
SDF2-201ENST00000247020 MYH15Q9Y2K3 1946 aa16.62■□□□□ 0.25
SDF2-201ENST00000247020 PTPDC1A2A3K4 754 aa16.62■□□□□ 0.25
SDF2-201ENST00000247020 ZBTB43O43298 467 aa16.62■□□□□ 0.25
SDF2-201ENST00000247020 NPM3O75607 178 aaKnown RBP16.62■□□□□ 0.25
SDF2-201ENST00000247020 CTDNEP1O95476 244 aa16.62■□□□□ 0.25
SDF2-201ENST00000247020 CRKP46108 304 aa16.62■□□□□ 0.25
SDF2-201ENST00000247020 CCT2P78371 535 aaKnown RBP16.62■□□□□ 0.25
SDF2-201ENST00000247020 ZSCAN10Q96SZ4 725 aaPredicted RBP16.62■□□□□ 0.25
SDF2-201ENST00000247020 SLC12A7Q9Y666 1083 aa16.62■□□□□ 0.25
SDF2-201ENST00000247020 TNKSO95271 1327 aa16.62■□□□□ 0.25
SDF2-201ENST00000247020 CPLX1O14810 134 aa16.61■□□□□ 0.25
SDF2-201ENST00000247020 RANBP6O60518 1105 aaKnown RBP16.61■□□□□ 0.25
SDF2-201ENST00000247020 POLR3DP05423 398 aaPredicted RBP16.61■□□□□ 0.25
SDF2-201ENST00000247020 PTGER2P43116 358 aa16.61■□□□□ 0.25
SDF2-201ENST00000247020 SKOR2Q2VWA4 1001 aaPredicted RBP16.61■□□□□ 0.25
SDF2-201ENST00000247020 MAPKAPK5Q8IW41 473 aa16.61■□□□□ 0.25
SDF2-201ENST00000247020 LARGE2Q8N3Y3 721 aa16.61■□□□□ 0.25
SDF2-201ENST00000247020 LTBP3Q9NS15 1303 aa16.61■□□□□ 0.25
SDF2-201ENST00000247020 TCHHQ07283 1943 aa16.61■□□□□ 0.25
SDF2-201ENST00000247020 CCDC196A0A1B0GTZ2 297 aa16.6■□□□□ 0.25
SDF2-201ENST00000247020 YDJCA8MPS7 323 aa16.6■□□□□ 0.25
SDF2-201ENST00000247020 F8W031 263 aaPredicted RBP16.6■□□□□ 0.25
SDF2-201ENST00000247020 JAK2O60674 1132 aa16.6■□□□□ 0.25
SDF2-201ENST00000247020 CYP2D6P10635 497 aa16.6■□□□□ 0.25
SDF2-201ENST00000247020 IARSP41252 1262 aaKnown RBP16.6■□□□□ 0.25
SDF2-201ENST00000247020 APOBEC3HQ6NTF7 200 aaKnown RBP16.6■□□□□ 0.25
SDF2-201ENST00000247020 C16orf86Q6ZW13 317 aa16.6■□□□□ 0.25
SDF2-201ENST00000247020 TTC6Q86TZ1 520 aa16.6■□□□□ 0.25
SDF2-201ENST00000247020 NCOA5Q9HCD5 579 aaKnown RBP16.6■□□□□ 0.25
SDF2-201ENST00000247020 KCNQ5Q9NR82 932 aa16.6■□□□□ 0.25
SDF2-201ENST00000247020 TCP11L1Q9NUJ3 509 aa16.6■□□□□ 0.25
SDF2-201ENST00000247020 GOLGA8AA7E2F4 631 aa16.6■□□□□ 0.25
SDF2-201ENST00000247020 VIL1P09327 827 aaKnown RBP16.6■□□□□ 0.25
SDF2-201ENST00000247020 CALM1P0DP23 149 aa16.6■□□□□ 0.25
SDF2-201ENST00000247020 CALM2P0DP24 149 aa16.6■□□□□ 0.25
SDF2-201ENST00000247020 CALM3P0DP25 149 aa16.6■□□□□ 0.25
SDF2-201ENST00000247020 MMP14P50281 582 aa16.6■□□□□ 0.25
SDF2-201ENST00000247020 MXD3Q9BW11 206 aa16.6■□□□□ 0.25
SDF2-201ENST00000247020 USP40Q9NVE5 1235 aa16.6■□□□□ 0.25
SDF2-201ENST00000247020 COL4A5P29400 1685 aa16.59■□□□□ 0.25
SDF2-201ENST00000247020 VPS37CA5D8V6 355 aaPredicted RBP16.59■□□□□ 0.25
SDF2-201ENST00000247020 SCNN1DP51172 638 aa16.59■□□□□ 0.25
SDF2-201ENST00000247020 IFIT1BQ5T764 474 aaKnown RBP16.59■□□□□ 0.25
SDF2-201ENST00000247020 RSBN1LQ6PCB5 846 aaPredicted RBP16.59■□□□□ 0.25
SDF2-201ENST00000247020 KIAA0825Q8IV33 1275 aa16.59■□□□□ 0.25
SDF2-201ENST00000247020 NIM1KQ8IY84 436 aa16.59■□□□□ 0.25
SDF2-201ENST00000247020 ENAHQ8N8S7 591 aaPredicted RBP16.59■□□□□ 0.25
SDF2-201ENST00000247020 IDI2Q9BXS1 227 aa16.59■□□□□ 0.25
SDF2-201ENST00000247020 TAOK3Q9H2K8 898 aa16.59■□□□□ 0.25
SDF2-201ENST00000247020 ZNRF3Q9ULT6 936 aa16.59■□□□□ 0.25
SDF2-201ENST00000247020 STK36Q9NRP7 1315 aa16.58■□□□□ 0.25
SDF2-201ENST00000247020 COL2A1P02458 1487 aaPredicted RBP16.58■□□□□ 0.25
SDF2-201ENST00000247020 MYH6P13533 1939 aa16.58■□□□□ 0.25
SDF2-201ENST00000247020 TSPY2A6NKD2 308 aa16.58■□□□□ 0.24
SDF2-201ENST00000247020 SMIM22K7EJ46 135 aa16.58■□□□□ 0.24
SDF2-201ENST00000247020 WDHD1O75717 1129 aaPredicted RBP16.58■□□□□ 0.24
SDF2-201ENST00000247020 DDAH1O94760 285 aa16.58■□□□□ 0.24
SDF2-201ENST00000247020 CDC42EP5Q6NZY7 148 aa16.58■□□□□ 0.24
SDF2-201ENST00000247020 MICU3Q86XE3 530 aa16.58■□□□□ 0.24
SDF2-201ENST00000247020 DGKHQ86XP1 1220 aa16.58■□□□□ 0.24
SDF2-201ENST00000247020 ZNF654Q8IZM8 581 aa16.58■□□□□ 0.24
SDF2-201ENST00000247020 STK11IPQ8N1F8 1099 aa16.58■□□□□ 0.24
SDF2-201ENST00000247020 ANKS1AQ92625 1134 aa16.58■□□□□ 0.24
SDF2-201ENST00000247020 ZKSCAN3Q9BRR0 538 aa16.58■□□□□ 0.24
SDF2-201ENST00000247020 ZSCAN16Q9H4T2 348 aaPredicted RBP16.58■□□□□ 0.24
SDF2-201ENST00000247020 MKNK2Q9HBH9 465 aa16.58■□□□□ 0.24
SDF2-201ENST00000247020 SENP2Q9HC62 589 aa16.58■□□□□ 0.24
SDF2-201ENST00000247020 ZNF277Q9NRM2 450 aaPredicted RBP16.58■□□□□ 0.24
SDF2-201ENST00000247020 PRDM1O75626 825 aa16.57■□□□□ 0.24
SDF2-201ENST00000247020 PLCD1P51178 756 aa16.57■□□□□ 0.24
SDF2-201ENST00000247020 MCTP1Q6DN14 999 aa16.57■□□□□ 0.24
SDF2-201ENST00000247020 ZNF444Q8N0Y2 327 aaPredicted RBP16.57■□□□□ 0.24
SDF2-201ENST00000247020 AGBL3Q8NEM8 1001 aa16.57■□□□□ 0.24
SDF2-201ENST00000247020 DDX11Q96FC9 970 aa16.57■□□□□ 0.24
SDF2-201ENST00000247020 OSBPL5Q9H0X9 879 aaPredicted RBP16.57■□□□□ 0.24
SDF2-201ENST00000247020 RBM28Q9NW13 759 aaKnown RBP16.57■□□□□ 0.24
SDF2-201ENST00000247020 SWAP70Q9UH65 585 aa16.57■□□□□ 0.24
SDF2-201ENST00000247020 HDAC9Q9UKV0 1011 aa16.57■□□□□ 0.24
SDF2-201ENST00000247020 H3BQV1 296 aa16.56■□□□□ 0.24
SDF2-201ENST00000247020 FDPSP14324 419 aaKnown RBP16.56■□□□□ 0.24
SDF2-201ENST00000247020 IFNAR1P17181 557 aa16.56■□□□□ 0.24
SDF2-201ENST00000247020 CDK8P49336 464 aa16.56■□□□□ 0.24
SDF2-201ENST00000247020 NTRK3Q16288 839 aa16.56■□□□□ 0.24
SDF2-201ENST00000247020 RTN1Q16799 776 aa16.56■□□□□ 0.24
SDF2-201ENST00000247020 IFFO2Q5TF58 517 aa16.56■□□□□ 0.24
SDF2-201ENST00000247020 CDC37L1Q7L3B6 337 aa16.56■□□□□ 0.24
SDF2-201ENST00000247020 CATIPQ7Z7H3 387 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms